HEADER TRANSPORT PROTEIN 20-JAN-11 3QEK TITLE CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAIN OF THE NMDA RECEPTOR TITLE 2 SUBUNIT GLUN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NMDA GLUTAMATE RECEPTOR SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: AMINO TERMINAL DOMAIN, RESIDUES 23-405; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: GRIN1, NR1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS AMINO TERMINAL DOMAIN, ION CHANNEL, NMDA RECEPTOR, ALLOSTERIC KEYWDS 2 MODULATION, PHENYLETHANOLAMINE, POLYAMINE, EXTRACELLULAR, MEMBRANE, KEYWDS 3 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.KARAKAS,N.SIMOROWSKI,H.FURUKAWA REVDAT 3 29-JUL-20 3QEK 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 20-JUL-11 3QEK 1 JRNL REVDAT 1 15-JUN-11 3QEK 0 JRNL AUTH E.KARAKAS,N.SIMOROWSKI,H.FURUKAWA JRNL TITL SUBUNIT ARRANGEMENT AND PHENYLETHANOLAMINE BINDING IN JRNL TITL 2 GLUN1/GLUN2B NMDA RECEPTORS. JRNL REF NATURE V. 475 249 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21677647 JRNL DOI 10.1038/NATURE10180 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 117186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 5995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9509 - 6.1992 0.98 3726 222 0.1908 0.1946 REMARK 3 2 6.1992 - 4.9276 1.00 3865 171 0.2017 0.2333 REMARK 3 3 4.9276 - 4.3068 1.00 3767 216 0.1519 0.1823 REMARK 3 4 4.3068 - 3.9139 1.00 3764 249 0.1620 0.1854 REMARK 3 5 3.9139 - 3.6339 1.00 3803 214 0.1768 0.1961 REMARK 3 6 3.6339 - 3.4200 1.00 3841 181 0.1840 0.2123 REMARK 3 7 3.4200 - 3.2489 1.00 3797 226 0.1971 0.2315 REMARK 3 8 3.2489 - 3.1077 1.00 3795 221 0.2009 0.2249 REMARK 3 9 3.1077 - 2.9881 0.99 3754 216 0.2085 0.2747 REMARK 3 10 2.9881 - 2.8851 0.99 3784 230 0.2127 0.2547 REMARK 3 11 2.8851 - 2.7950 0.99 3775 207 0.2061 0.2341 REMARK 3 12 2.7950 - 2.7151 0.99 3863 172 0.2136 0.2636 REMARK 3 13 2.7151 - 2.6437 0.99 3734 208 0.2099 0.2640 REMARK 3 14 2.6437 - 2.5792 0.98 3801 206 0.1985 0.2642 REMARK 3 15 2.5792 - 2.5206 0.99 3752 215 0.2022 0.2510 REMARK 3 16 2.5206 - 2.4670 0.98 3749 162 0.2059 0.2423 REMARK 3 17 2.4670 - 2.4177 0.98 3747 197 0.2009 0.2182 REMARK 3 18 2.4177 - 2.3721 0.98 3704 181 0.1888 0.2721 REMARK 3 19 2.3721 - 2.3297 0.97 3733 233 0.1946 0.2330 REMARK 3 20 2.3297 - 2.2903 0.97 3770 152 0.2022 0.2747 REMARK 3 21 2.2903 - 2.2533 0.97 3607 204 0.1971 0.2266 REMARK 3 22 2.2533 - 2.2187 0.96 3754 184 0.2041 0.2878 REMARK 3 23 2.2187 - 2.1860 0.96 3688 192 0.1934 0.2627 REMARK 3 24 2.1860 - 2.1553 0.96 3559 219 0.1992 0.2375 REMARK 3 25 2.1553 - 2.1261 0.95 3621 187 0.2002 0.2683 REMARK 3 26 2.1261 - 2.0985 0.95 3713 186 0.2185 0.2917 REMARK 3 27 2.0985 - 2.0723 0.94 3543 193 0.2290 0.2861 REMARK 3 28 2.0723 - 2.0474 0.93 3516 188 0.2210 0.2896 REMARK 3 29 2.0474 - 2.0235 0.91 3555 193 0.2344 0.3026 REMARK 3 30 2.0235 - 2.0008 0.83 3111 170 0.2237 0.2387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 46.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.44930 REMARK 3 B22 (A**2) : 0.72070 REMARK 3 B33 (A**2) : -7.17010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5793 REMARK 3 ANGLE : 1.064 7848 REMARK 3 CHIRALITY : 0.070 910 REMARK 3 PLANARITY : 0.005 990 REMARK 3 DIHEDRAL : 13.524 2134 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.39600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 150MM KNO3, 50MM HEPES PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.66150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.98900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.40650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.98900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.66150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.40650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 PRO A 95 REMARK 465 PRO A 96 REMARK 465 ALA A 97 REMARK 465 PRO A 98 REMARK 465 THR A 99 REMARK 465 ASP A 100 REMARK 465 HIS A 101 REMARK 465 LEU A 102 REMARK 465 GLY A 186 REMARK 465 LYS A 187 REMARK 465 GLU A 188 REMARK 465 SER A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 LYS A 193 REMARK 465 ARG A 194 REMARK 465 ASN A 195 REMARK 465 TYR A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 LEU A 199 REMARK 465 SER B 22 REMARK 465 ASP B 23 REMARK 465 PHE B 54 REMARK 465 THR B 55 REMARK 465 ARG B 56 REMARK 465 LYS B 57 REMARK 465 PRO B 96 REMARK 465 ALA B 97 REMARK 465 PRO B 98 REMARK 465 THR B 99 REMARK 465 ASP B 100 REMARK 465 HIS B 101 REMARK 465 LEU B 102 REMARK 465 GLU B 197 REMARK 465 ASN B 198 REMARK 465 LEU B 199 REMARK 465 ASP B 200 REMARK 465 GLN B 201 REMARK 465 LEU B 202 REMARK 465 SER B 203 REMARK 465 TYR B 204 REMARK 465 ASP B 205 REMARK 465 ASN B 206 REMARK 465 LYS B 207 REMARK 465 ARG B 208 REMARK 465 GLY B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 THR A 103 OG1 CG2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 ASP A 200 CG OD1 OD2 REMARK 470 GLN A 201 CG CD OE1 NE2 REMARK 470 SER A 203 OG REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 GLN B 40 CG CD OE1 NE2 REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 188 CG CD OE1 OE2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 TYR B 196 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 470 GLU B 234 CG CD OE1 OE2 REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 LYS B 399 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 122 -6.80 -141.87 REMARK 500 LYS A 214 140.60 -171.83 REMARK 500 ASP A 353 34.69 -97.81 REMARK 500 SER A 391 -38.48 -137.87 REMARK 500 ASN A 396 -156.89 -108.53 REMARK 500 THR B 122 -9.96 -142.20 REMARK 500 ASP B 353 58.31 -104.48 REMARK 500 SER B 391 -42.79 -140.11 REMARK 500 ASN B 396 -156.29 -102.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG C 2 REMARK 615 NAG A 502 REMARK 615 NAG A 503 REMARK 615 NAG B 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 128 O REMARK 620 2 ASP A 130 O 108.5 REMARK 620 3 ILE A 133 O 113.0 74.2 REMARK 620 4 HIS A 134 O 94.2 145.6 73.2 REMARK 620 5 HOH A 522 O 66.1 135.0 150.5 77.5 REMARK 620 6 HOH A 544 O 97.9 63.0 133.4 140.4 73.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 128 O REMARK 620 2 ASP B 130 O 107.7 REMARK 620 3 ILE B 133 O 109.2 74.9 REMARK 620 4 HIS B 134 O 93.3 145.7 72.7 REMARK 620 5 HOH B 457 O 105.1 59.3 129.0 141.1 REMARK 620 6 HOH B 510 O 70.4 130.1 154.7 82.0 72.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QEL RELATED DB: PDB REMARK 900 RELATED ID: 3QEM RELATED DB: PDB DBREF 3QEK A 23 405 UNP Q91977 Q91977_XENLA 23 405 DBREF 3QEK B 23 405 UNP Q91977 Q91977_XENLA 23 405 SEQADV 3QEK SER A 22 UNP Q91977 EXPRESSION TAG SEQADV 3QEK GLN A 61 UNP Q91977 ASN 61 ENGINEERED MUTATION SEQADV 3QEK GLN A 371 UNP Q91977 ASN 371 ENGINEERED MUTATION SEQADV 3QEK SER B 22 UNP Q91977 EXPRESSION TAG SEQADV 3QEK GLN B 61 UNP Q91977 ASN 61 ENGINEERED MUTATION SEQADV 3QEK GLN B 371 UNP Q91977 ASN 371 ENGINEERED MUTATION SEQRES 1 A 384 SER ASP PRO LYS ILE VAL ASN ILE GLY ALA VAL LEU SER SEQRES 2 A 384 THR LYS LYS HIS GLU GLN ILE PHE ARG GLU ALA VAL ASN SEQRES 3 A 384 GLN ALA ASN LYS ARG HIS PHE THR ARG LYS ILE GLN LEU SEQRES 4 A 384 GLN ALA THR SER VAL THR HIS ARG PRO ASN ALA ILE GLN SEQRES 5 A 384 MSE ALA LEU SER VAL CYS GLU ASP LEU ILE SER SER GLN SEQRES 6 A 384 VAL TYR ALA ILE LEU VAL SER HIS PRO PRO ALA PRO THR SEQRES 7 A 384 ASP HIS LEU THR PRO THR PRO ILE SER TYR THR ALA GLY SEQRES 8 A 384 PHE TYR ARG ILE PRO VAL ILE GLY LEU THR THR ARG MSE SEQRES 9 A 384 SER ILE TYR SER ASP LYS SER ILE HIS LEU SER PHE LEU SEQRES 10 A 384 ARG THR VAL PRO PRO TYR SER HIS GLN ALA LEU VAL TRP SEQRES 11 A 384 PHE GLU MSE MSE ARG LEU PHE ASN TRP ASN HIS VAL ILE SEQRES 12 A 384 LEU ILE VAL SER ASP ASP HIS GLU GLY ARG ALA ALA GLN SEQRES 13 A 384 LYS LYS LEU GLU THR LEU LEU GLU GLY LYS GLU SER LYS SEQRES 14 A 384 SER LYS LYS ARG ASN TYR GLU ASN LEU ASP GLN LEU SER SEQRES 15 A 384 TYR ASP ASN LYS ARG GLY PRO LYS ALA ASP LYS VAL LEU SEQRES 16 A 384 GLN PHE GLU PRO GLY THR LYS ASN LEU THR ALA LEU LEU SEQRES 17 A 384 LEU GLU ALA LYS GLU LEU GLU ALA ARG VAL ILE ILE LEU SEQRES 18 A 384 SER ALA SER GLU ASP ASP ALA THR ALA VAL TYR LYS SER SEQRES 19 A 384 ALA ALA MSE LEU ASP MSE THR GLY ALA GLY TYR VAL TRP SEQRES 20 A 384 LEU VAL GLY GLU ARG GLU ILE SER GLY SER ALA LEU ARG SEQRES 21 A 384 TYR ALA PRO ASP GLY ILE ILE GLY LEU GLN LEU ILE ASN SEQRES 22 A 384 GLY LYS ASN GLU SER ALA HIS ILE SER ASP ALA VAL ALA SEQRES 23 A 384 VAL VAL ALA GLN ALA ILE HIS GLU LEU PHE GLU MSE GLU SEQRES 24 A 384 ASN ILE THR ASP PRO PRO ARG GLY CYS VAL GLY ASN THR SEQRES 25 A 384 ASN ILE TRP LYS THR GLY PRO LEU PHE LYS ARG VAL LEU SEQRES 26 A 384 MSE SER SER LYS TYR PRO ASP GLY VAL THR GLY ARG ILE SEQRES 27 A 384 GLU PHE ASN GLU ASP GLY ASP ARG LYS PHE ALA GLN TYR SEQRES 28 A 384 SER ILE MSE ASN LEU GLN ASN ARG LYS LEU VAL GLN VAL SEQRES 29 A 384 GLY ILE PHE ASN GLY SER TYR ILE ILE GLN ASN ASP ARG SEQRES 30 A 384 LYS ILE ILE TRP PRO GLY GLY SEQRES 1 B 384 SER ASP PRO LYS ILE VAL ASN ILE GLY ALA VAL LEU SER SEQRES 2 B 384 THR LYS LYS HIS GLU GLN ILE PHE ARG GLU ALA VAL ASN SEQRES 3 B 384 GLN ALA ASN LYS ARG HIS PHE THR ARG LYS ILE GLN LEU SEQRES 4 B 384 GLN ALA THR SER VAL THR HIS ARG PRO ASN ALA ILE GLN SEQRES 5 B 384 MSE ALA LEU SER VAL CYS GLU ASP LEU ILE SER SER GLN SEQRES 6 B 384 VAL TYR ALA ILE LEU VAL SER HIS PRO PRO ALA PRO THR SEQRES 7 B 384 ASP HIS LEU THR PRO THR PRO ILE SER TYR THR ALA GLY SEQRES 8 B 384 PHE TYR ARG ILE PRO VAL ILE GLY LEU THR THR ARG MSE SEQRES 9 B 384 SER ILE TYR SER ASP LYS SER ILE HIS LEU SER PHE LEU SEQRES 10 B 384 ARG THR VAL PRO PRO TYR SER HIS GLN ALA LEU VAL TRP SEQRES 11 B 384 PHE GLU MSE MSE ARG LEU PHE ASN TRP ASN HIS VAL ILE SEQRES 12 B 384 LEU ILE VAL SER ASP ASP HIS GLU GLY ARG ALA ALA GLN SEQRES 13 B 384 LYS LYS LEU GLU THR LEU LEU GLU GLY LYS GLU SER LYS SEQRES 14 B 384 SER LYS LYS ARG ASN TYR GLU ASN LEU ASP GLN LEU SER SEQRES 15 B 384 TYR ASP ASN LYS ARG GLY PRO LYS ALA ASP LYS VAL LEU SEQRES 16 B 384 GLN PHE GLU PRO GLY THR LYS ASN LEU THR ALA LEU LEU SEQRES 17 B 384 LEU GLU ALA LYS GLU LEU GLU ALA ARG VAL ILE ILE LEU SEQRES 18 B 384 SER ALA SER GLU ASP ASP ALA THR ALA VAL TYR LYS SER SEQRES 19 B 384 ALA ALA MSE LEU ASP MSE THR GLY ALA GLY TYR VAL TRP SEQRES 20 B 384 LEU VAL GLY GLU ARG GLU ILE SER GLY SER ALA LEU ARG SEQRES 21 B 384 TYR ALA PRO ASP GLY ILE ILE GLY LEU GLN LEU ILE ASN SEQRES 22 B 384 GLY LYS ASN GLU SER ALA HIS ILE SER ASP ALA VAL ALA SEQRES 23 B 384 VAL VAL ALA GLN ALA ILE HIS GLU LEU PHE GLU MSE GLU SEQRES 24 B 384 ASN ILE THR ASP PRO PRO ARG GLY CYS VAL GLY ASN THR SEQRES 25 B 384 ASN ILE TRP LYS THR GLY PRO LEU PHE LYS ARG VAL LEU SEQRES 26 B 384 MSE SER SER LYS TYR PRO ASP GLY VAL THR GLY ARG ILE SEQRES 27 B 384 GLU PHE ASN GLU ASP GLY ASP ARG LYS PHE ALA GLN TYR SEQRES 28 B 384 SER ILE MSE ASN LEU GLN ASN ARG LYS LEU VAL GLN VAL SEQRES 29 B 384 GLY ILE PHE ASN GLY SER TYR ILE ILE GLN ASN ASP ARG SEQRES 30 B 384 LYS ILE ILE TRP PRO GLY GLY MODRES 3QEK ASN A 389 ASN GLYCOSYLATION SITE MODRES 3QEK ASN A 297 ASN GLYCOSYLATION SITE MODRES 3QEK ASN B 297 ASN GLYCOSYLATION SITE MODRES 3QEK ASN B 389 ASN GLYCOSYLATION SITE MODRES 3QEK ASN A 321 ASN GLYCOSYLATION SITE MODRES 3QEK MSE A 74 MET SELENOMETHIONINE MODRES 3QEK MSE A 125 MET SELENOMETHIONINE MODRES 3QEK MSE A 154 MET SELENOMETHIONINE MODRES 3QEK MSE A 155 MET SELENOMETHIONINE MODRES 3QEK MSE A 258 MET SELENOMETHIONINE MODRES 3QEK MSE A 261 MET SELENOMETHIONINE MODRES 3QEK MSE A 319 MET SELENOMETHIONINE MODRES 3QEK MSE A 347 MET SELENOMETHIONINE MODRES 3QEK MSE A 375 MET SELENOMETHIONINE MODRES 3QEK MSE B 74 MET SELENOMETHIONINE MODRES 3QEK MSE B 125 MET SELENOMETHIONINE MODRES 3QEK MSE B 154 MET SELENOMETHIONINE MODRES 3QEK MSE B 155 MET SELENOMETHIONINE MODRES 3QEK MSE B 258 MET SELENOMETHIONINE MODRES 3QEK MSE B 261 MET SELENOMETHIONINE MODRES 3QEK MSE B 319 MET SELENOMETHIONINE MODRES 3QEK MSE B 347 MET SELENOMETHIONINE MODRES 3QEK MSE B 375 MET SELENOMETHIONINE HET MSE A 74 8 HET MSE A 125 8 HET MSE A 154 8 HET MSE A 155 8 HET MSE A 258 8 HET MSE A 261 8 HET MSE A 319 8 HET MSE A 347 8 HET MSE A 375 8 HET MSE B 74 8 HET MSE B 125 8 HET MSE B 154 8 HET MSE B 155 8 HET MSE B 258 8 HET MSE B 261 8 HET MSE B 319 8 HET MSE B 347 8 HET MSE B 375 8 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET K A 501 1 HET NAG A 502 14 HET NAG A 503 14 HET K B 501 1 HET NAG B 502 14 HET NAG B 503 14 HETNAM MSE SELENOMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM K POTASSIUM ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 4 K 2(K 1+) FORMUL 10 HOH *328(H2 O) HELIX 1 1 THR A 35 HIS A 53 1 19 HELIX 2 2 ASN A 70 LEU A 82 1 13 HELIX 3 3 ILE A 83 SER A 85 5 3 HELIX 4 4 PRO A 104 PHE A 113 1 10 HELIX 5 5 MSE A 125 ASP A 130 5 6 HELIX 6 6 PRO A 143 SER A 145 5 3 HELIX 7 7 HIS A 146 PHE A 158 1 13 HELIX 8 8 ASP A 170 GLU A 185 1 16 HELIX 9 9 LEU A 225 GLU A 234 1 10 HELIX 10 10 SER A 245 LEU A 259 1 15 HELIX 11 11 GLU A 272 ARG A 281 5 10 HELIX 12 12 ASN A 297 GLU A 318 1 22 HELIX 13 13 THR A 338 SER A 348 1 11 HELIX 14 14 THR B 35 HIS B 53 1 19 HELIX 15 15 ASN B 70 LEU B 82 1 13 HELIX 16 16 ILE B 83 SER B 85 5 3 HELIX 17 17 PRO B 104 PHE B 113 1 10 HELIX 18 18 MSE B 125 ASP B 130 5 6 HELIX 19 19 PRO B 143 HIS B 146 5 4 HELIX 20 20 GLN B 147 PHE B 158 1 12 HELIX 21 21 ASP B 170 ASN B 195 1 26 HELIX 22 22 LEU B 225 GLU B 234 1 10 HELIX 23 23 SER B 245 LEU B 259 1 15 HELIX 24 24 GLU B 272 ILE B 275 5 4 HELIX 25 25 SER B 276 ALA B 283 1 8 HELIX 26 26 ASN B 297 PHE B 317 1 21 HELIX 27 27 THR B 338 SER B 348 1 11 SHEET 1 A 5 ILE A 58 THR A 66 0 SHEET 2 A 5 LYS A 25 LEU A 33 1 N VAL A 27 O GLN A 59 SHEET 3 A 5 VAL A 87 VAL A 92 1 O ALA A 89 N GLY A 30 SHEET 4 A 5 VAL A 118 GLY A 120 1 O ILE A 119 N ILE A 90 SHEET 5 A 5 PHE A 137 ARG A 139 1 O LEU A 138 N GLY A 120 SHEET 1 B 4 LYS A 211 PHE A 218 0 SHEET 2 B 4 HIS A 162 SER A 168 1 N LEU A 165 O LEU A 216 SHEET 3 B 4 VAL A 239 SER A 243 1 O ILE A 241 N ILE A 166 SHEET 4 B 4 VAL A 267 LEU A 269 1 O VAL A 267 N ILE A 240 SHEET 1 C 4 ILE A 288 LEU A 292 0 SHEET 2 C 4 TYR A 372 GLN A 378 -1 O SER A 373 N GLN A 291 SHEET 3 C 4 LYS A 381 PHE A 388 -1 O LYS A 381 N GLN A 378 SHEET 4 C 4 ILE A 393 GLN A 395 -1 O ILE A 394 N ILE A 387 SHEET 1 D 2 TYR A 351 GLY A 354 0 SHEET 2 D 2 GLY A 357 ILE A 359 -1 O ILE A 359 N TYR A 351 SHEET 1 E 5 GLN B 59 THR B 66 0 SHEET 2 E 5 ILE B 26 LEU B 33 1 N VAL B 27 O GLN B 59 SHEET 3 E 5 VAL B 87 VAL B 92 1 O ALA B 89 N GLY B 30 SHEET 4 E 5 VAL B 118 GLY B 120 1 O ILE B 119 N ILE B 90 SHEET 5 E 5 PHE B 137 ARG B 139 1 O LEU B 138 N GLY B 120 SHEET 1 F 4 LYS B 211 PHE B 218 0 SHEET 2 F 4 HIS B 162 SER B 168 1 N LEU B 165 O LEU B 216 SHEET 3 F 4 VAL B 239 SER B 243 1 O ILE B 241 N ILE B 164 SHEET 4 F 4 VAL B 267 VAL B 270 1 O VAL B 267 N ILE B 240 SHEET 1 G 4 ILE B 288 LEU B 292 0 SHEET 2 G 4 TYR B 372 GLN B 378 -1 O SER B 373 N GLN B 291 SHEET 3 G 4 LYS B 381 PHE B 388 -1 O VAL B 383 N ASN B 376 SHEET 4 G 4 ILE B 393 GLN B 395 -1 O ILE B 394 N ILE B 387 SHEET 1 H 2 TYR B 351 GLY B 354 0 SHEET 2 H 2 GLY B 357 ILE B 359 -1 O ILE B 359 N TYR B 351 SSBOND 1 CYS A 79 CYS A 329 1555 1555 2.05 SSBOND 2 CYS B 79 CYS B 329 1555 1555 2.06 LINK C GLN A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N ALA A 75 1555 1555 1.33 LINK C ARG A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N SER A 126 1555 1555 1.33 LINK C GLU A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N ARG A 156 1555 1555 1.33 LINK C ALA A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N LEU A 259 1555 1555 1.33 LINK C ASP A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N THR A 262 1555 1555 1.33 LINK ND2 ASN A 297 C1 NAG A 502 1555 1555 1.44 LINK C GLU A 318 N MSE A 319 1555 1555 1.33 LINK C MSE A 319 N GLU A 320 1555 1555 1.33 LINK ND2 ASN A 321 C1 NAG A 503 1555 1555 1.44 LINK C LEU A 346 N MSE A 347 1555 1555 1.32 LINK C MSE A 347 N SER A 348 1555 1555 1.32 LINK C ILE A 374 N MSE A 375 1555 1555 1.33 LINK C MSE A 375 N ASN A 376 1555 1555 1.33 LINK ND2 ASN A 389 C1 NAG C 1 1555 1555 1.44 LINK C GLN B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N ALA B 75 1555 1555 1.34 LINK C ARG B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N SER B 126 1555 1555 1.33 LINK C GLU B 153 N MSE B 154 1555 1555 1.33 LINK C MSE B 154 N MSE B 155 1555 1555 1.33 LINK C MSE B 155 N ARG B 156 1555 1555 1.33 LINK C ALA B 257 N MSE B 258 1555 1555 1.33 LINK C MSE B 258 N LEU B 259 1555 1555 1.33 LINK C ASP B 260 N MSE B 261 1555 1555 1.33 LINK C MSE B 261 N THR B 262 1555 1555 1.33 LINK ND2 ASN B 297 C1 NAG B 502 1555 1555 1.44 LINK C GLU B 318 N MSE B 319 1555 1555 1.33 LINK C MSE B 319 N GLU B 320 1555 1555 1.33 LINK C LEU B 346 N MSE B 347 1555 1555 1.33 LINK C MSE B 347 N SER B 348 1555 1555 1.33 LINK C ILE B 374 N MSE B 375 1555 1555 1.33 LINK C MSE B 375 N ASN B 376 1555 1555 1.33 LINK ND2 ASN B 389 C1 NAG B 503 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O TYR A 128 K K A 501 1555 1555 3.00 LINK O ASP A 130 K K A 501 1555 1555 2.64 LINK O ILE A 133 K K A 501 1555 1555 2.63 LINK O HIS A 134 K K A 501 1555 1555 2.97 LINK K K A 501 O HOH A 522 1555 1555 2.76 LINK K K A 501 O HOH A 544 1555 1555 3.34 LINK O TYR B 128 K K B 501 1555 1555 2.78 LINK O ASP B 130 K K B 501 1555 1555 2.68 LINK O ILE B 133 K K B 501 1555 1555 2.64 LINK O HIS B 134 K K B 501 1555 1555 2.85 LINK O HOH B 457 K K B 501 1555 1555 3.49 LINK K K B 501 O HOH B 510 1555 1555 2.66 CRYST1 47.323 92.813 209.978 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021131 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004762 0.00000