HEADER TRANSCRIPTION 21-JAN-11 3QF3 TITLE CRYSTAL STRUCTURE OF ESPR TRANSCRIPTION FACTOR FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESX-1 SECRETION-ASSOCIATED REGULATOR ESPR; COMPND 3 CHAIN: A, D, B, C, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ESPR, MT3964, RV3849; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS9 KEYWDS N-TERMINAL HTH MOTIF, C-TERMINAL DIMERIZATION DOMAIN, TRANSCRIPTION KEYWDS 2 FACTOR, HOMODIMER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.BLASCO,F.POJER,S.T.COLE REVDAT 5 03-APR-24 3QF3 1 REMARK REVDAT 4 21-FEB-24 3QF3 1 REMARK SEQADV REVDAT 3 30-JAN-13 3QF3 1 HETATM REVDAT 2 16-NOV-11 3QF3 1 JRNL REVDAT 1 14-SEP-11 3QF3 0 JRNL AUTH B.BLASCO,M.STENTA,L.ALONSO-SARDUY,G.DIETLER,M.D.PERARO, JRNL AUTH 2 S.T.COLE,F.POJER JRNL TITL ATYPICAL DNA RECOGNITION MECHANISM USED BY THE ESPR JRNL TITL 2 VIRULENCE REGULATOR OF MYCOBACTERIUM TUBERCULOSIS. JRNL REF MOL.MICROBIOL. V. 82 251 2011 JRNL REFN ISSN 0950-382X JRNL PMID 21883526 JRNL DOI 10.1111/J.1365-2958.2011.07813.X REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9241 - 5.1889 1.00 3923 206 0.1594 0.2158 REMARK 3 2 5.1889 - 4.1203 1.00 3879 204 0.1386 0.1722 REMARK 3 3 4.1203 - 3.6000 1.00 3825 201 0.1723 0.2377 REMARK 3 4 3.6000 - 3.2711 1.00 3813 201 0.1966 0.2633 REMARK 3 5 3.2711 - 3.0367 1.00 3839 202 0.2057 0.2727 REMARK 3 6 3.0367 - 2.8577 1.00 3844 202 0.2278 0.2841 REMARK 3 7 2.8577 - 2.7147 1.00 3811 201 0.2207 0.2946 REMARK 3 8 2.7147 - 2.5965 1.00 3812 201 0.2351 0.3217 REMARK 3 9 2.5965 - 2.4966 1.00 3801 200 0.2452 0.3002 REMARK 3 10 2.4966 - 2.4105 0.97 3705 195 0.2467 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 43.17 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08760 REMARK 3 B22 (A**2) : -2.80840 REMARK 3 B33 (A**2) : 2.72080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.86010 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6277 REMARK 3 ANGLE : 0.999 8485 REMARK 3 CHIRALITY : 0.062 922 REMARK 3 PLANARITY : 0.005 1126 REMARK 3 DIHEDRAL : 14.448 2370 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:95) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5360 12.8746 7.2558 REMARK 3 T TENSOR REMARK 3 T11: 0.4898 T22: 0.4826 REMARK 3 T33: 0.3283 T12: 0.3522 REMARK 3 T13: -0.2412 T23: -0.1665 REMARK 3 L TENSOR REMARK 3 L11: 2.0726 L22: 2.3635 REMARK 3 L33: 3.5475 L12: 0.7800 REMARK 3 L13: 0.7637 L23: 2.5708 REMARK 3 S TENSOR REMARK 3 S11: -0.5918 S12: -0.5140 S13: 0.3185 REMARK 3 S21: 0.0118 S22: 0.1960 S23: -0.0679 REMARK 3 S31: -0.5345 S32: -0.6794 S33: 0.3353 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 96:133) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0930 -10.4505 15.6813 REMARK 3 T TENSOR REMARK 3 T11: 0.3731 T22: 0.2670 REMARK 3 T33: 0.2459 T12: 0.1121 REMARK 3 T13: -0.0110 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 1.1288 L22: 1.7356 REMARK 3 L33: 6.0828 L12: -1.0006 REMARK 3 L13: 1.0807 L23: 1.0261 REMARK 3 S TENSOR REMARK 3 S11: -0.2916 S12: 0.1300 S13: -0.1018 REMARK 3 S21: 0.1946 S22: 0.1747 S23: 0.2715 REMARK 3 S31: 0.7629 S32: 0.7703 S33: 0.0352 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 3:93) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0915 -7.5650 -37.2220 REMARK 3 T TENSOR REMARK 3 T11: 0.7319 T22: 0.1755 REMARK 3 T33: 0.1740 T12: -0.1829 REMARK 3 T13: -0.1012 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.3821 L22: 0.4819 REMARK 3 L33: 8.4009 L12: -0.3472 REMARK 3 L13: 1.9554 L23: 0.1868 REMARK 3 S TENSOR REMARK 3 S11: 0.6284 S12: -0.1572 S13: -0.0944 REMARK 3 S21: 0.1594 S22: -0.0684 S23: -0.0651 REMARK 3 S31: 2.1003 S32: -0.4659 S33: -0.4935 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 94:133) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6248 15.6545 -29.0378 REMARK 3 T TENSOR REMARK 3 T11: 0.2628 T22: 0.2794 REMARK 3 T33: 0.4008 T12: -0.1558 REMARK 3 T13: -0.0403 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 1.4624 L22: 2.8790 REMARK 3 L33: 2.8141 L12: 0.2946 REMARK 3 L13: 0.6977 L23: -1.5843 REMARK 3 S TENSOR REMARK 3 S11: -0.1403 S12: 0.1624 S13: -0.1450 REMARK 3 S21: 0.2942 S22: -0.3443 S23: -0.3258 REMARK 3 S31: -0.4108 S32: 0.1994 S33: 0.4931 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 3:91) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4310 6.7566 -56.6045 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: 0.3354 REMARK 3 T33: 0.1901 T12: -0.0248 REMARK 3 T13: 0.0087 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.6110 L22: 0.9205 REMARK 3 L33: 5.1676 L12: -0.2579 REMARK 3 L13: 1.7093 L23: 0.1738 REMARK 3 S TENSOR REMARK 3 S11: -0.0275 S12: 0.4095 S13: 0.2153 REMARK 3 S21: -0.0329 S22: -0.0664 S23: -0.1178 REMARK 3 S31: -0.0821 S32: 0.7362 S33: 0.0953 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 92:131) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3387 18.2979 -32.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.4045 T22: 0.4061 REMARK 3 T33: 0.4847 T12: -0.1572 REMARK 3 T13: -0.1205 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.3095 L22: 2.5746 REMARK 3 L33: 0.9848 L12: 1.8375 REMARK 3 L13: 1.3617 L23: 0.7069 REMARK 3 S TENSOR REMARK 3 S11: -0.3560 S12: 0.5805 S13: -0.1271 REMARK 3 S21: 0.1456 S22: 0.0429 S23: 0.1608 REMARK 3 S31: -0.2921 S32: 0.2217 S33: 0.2368 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 4:80) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2656 0.7901 -13.5862 REMARK 3 T TENSOR REMARK 3 T11: 0.3688 T22: 0.1284 REMARK 3 T33: 0.1407 T12: -0.0845 REMARK 3 T13: -0.0386 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.1366 L22: 0.8073 REMARK 3 L33: 4.0338 L12: 0.1890 REMARK 3 L13: 0.7952 L23: -0.3968 REMARK 3 S TENSOR REMARK 3 S11: -0.3127 S12: -0.0425 S13: 0.0825 REMARK 3 S21: -0.3113 S22: 0.1760 S23: -0.1143 REMARK 3 S31: 0.4556 S32: -0.3716 S33: 0.0485 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN D AND RESID 81:131) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3014 -9.4895 7.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.4342 T22: 0.3796 REMARK 3 T33: 0.3204 T12: 0.1548 REMARK 3 T13: -0.0456 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 0.3046 L22: 1.4229 REMARK 3 L33: 4.7158 L12: -0.2959 REMARK 3 L13: 1.2873 L23: -0.2859 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.1245 S13: 0.2220 REMARK 3 S21: -0.2814 S22: 0.0772 S23: 0.0074 REMARK 3 S31: 0.9394 S32: 1.0235 S33: -0.1343 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN E AND RESID 3:94) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9906 -28.7573 -41.8258 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.5982 REMARK 3 T33: 0.1326 T12: 0.0375 REMARK 3 T13: 0.1048 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 2.5765 L22: 3.7645 REMARK 3 L33: 1.3884 L12: 0.0701 REMARK 3 L13: 1.1040 L23: 0.2600 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.3725 S13: -0.0412 REMARK 3 S21: 0.5949 S22: 0.0067 S23: 0.2726 REMARK 3 S31: -0.2311 S32: -0.8797 S33: 0.0600 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN E AND RESID 95:133) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5787 -30.7536 -62.3252 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.5334 REMARK 3 T33: 0.3067 T12: -0.1208 REMARK 3 T13: 0.0657 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.1468 L22: 1.1553 REMARK 3 L33: 3.3820 L12: -0.6063 REMARK 3 L13: 0.7099 L23: -0.1675 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: 0.5518 S13: -0.0384 REMARK 3 S21: -0.0231 S22: -0.0426 S23: -0.2442 REMARK 3 S31: -0.0718 S32: 0.9880 S33: 0.1475 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN F AND RESID 3:89) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6004 -29.2902 -27.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.4104 T22: 0.3137 REMARK 3 T33: 0.2130 T12: -0.2303 REMARK 3 T13: -0.0476 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 1.6264 L22: 3.0458 REMARK 3 L33: 3.3640 L12: 0.3434 REMARK 3 L13: 1.9327 L23: 0.6303 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: -0.0153 S13: -0.0969 REMARK 3 S21: 0.4146 S22: -0.3826 S23: -0.1297 REMARK 3 S31: -0.4761 S32: 0.1414 S33: 0.2021 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN F AND RESID 90:132) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7887 -32.0791 -58.4348 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.4276 REMARK 3 T33: 0.2402 T12: -0.1842 REMARK 3 T13: 0.0832 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.6518 L22: 0.4371 REMARK 3 L33: 1.3520 L12: -0.9973 REMARK 3 L13: 1.5553 L23: -0.4117 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.4523 S13: -0.3954 REMARK 3 S21: 0.1979 S22: -0.2281 S23: -0.0423 REMARK 3 S31: -0.1075 S32: 0.6112 S33: 0.3126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 36.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.180 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XDS REMARK 200 STARTING MODEL: USING OUR 2.8A SAD SOLVED STRUCTURE OF A SELENO REMARK 200 -METHIONINE DERIVATIVE CRYSTAL OF ESPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M MALIC ACID, PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.85100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS 6 MONOMERS. THE BIOLOGICAL REMARK 300 ASSEMBLY IS AN HOMODIMER CONTAINING CHAINS C AND D REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 465 SER D 3 REMARK 465 ASP D 132 REMARK 465 ALA D 133 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 GLY C 1 REMARK 465 SER C 2 REMARK 465 ASP C 132 REMARK 465 ALA C 133 REMARK 465 GLY E 1 REMARK 465 SER E 2 REMARK 465 GLY F 1 REMARK 465 SER F 2 REMARK 465 ALA F 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -69.90 -108.49 REMARK 500 ASP A 78 96.62 -61.35 REMARK 500 THR B 77 -66.00 -100.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMR A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMR B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMR E 134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QWG RELATED DB: PDB REMARK 900 RELATED ID: 3QYX RELATED DB: PDB DBREF 3QF3 A 3 133 UNP P96228 ESPR_MYCTU 2 132 DBREF 3QF3 D 3 133 UNP P96228 ESPR_MYCTU 2 132 DBREF 3QF3 B 3 133 UNP P96228 ESPR_MYCTU 2 132 DBREF 3QF3 C 3 133 UNP P96228 ESPR_MYCTU 2 132 DBREF 3QF3 E 3 133 UNP P96228 ESPR_MYCTU 2 132 DBREF 3QF3 F 3 133 UNP P96228 ESPR_MYCTU 2 132 SEQADV 3QF3 GLY A 1 UNP P96228 EXPRESSION TAG SEQADV 3QF3 SER A 2 UNP P96228 EXPRESSION TAG SEQADV 3QF3 GLY D 1 UNP P96228 EXPRESSION TAG SEQADV 3QF3 SER D 2 UNP P96228 EXPRESSION TAG SEQADV 3QF3 GLY B 1 UNP P96228 EXPRESSION TAG SEQADV 3QF3 SER B 2 UNP P96228 EXPRESSION TAG SEQADV 3QF3 GLY C 1 UNP P96228 EXPRESSION TAG SEQADV 3QF3 SER C 2 UNP P96228 EXPRESSION TAG SEQADV 3QF3 GLY E 1 UNP P96228 EXPRESSION TAG SEQADV 3QF3 SER E 2 UNP P96228 EXPRESSION TAG SEQADV 3QF3 GLY F 1 UNP P96228 EXPRESSION TAG SEQADV 3QF3 SER F 2 UNP P96228 EXPRESSION TAG SEQRES 1 A 133 GLY SER SER THR THR PHE ALA ALA ARG LEU ASN ARG LEU SEQRES 2 A 133 PHE ASP THR VAL TYR PRO PRO GLY ARG GLY PRO HIS THR SEQRES 3 A 133 SER ALA GLU VAL ILE ALA ALA LEU LYS ALA GLU GLY ILE SEQRES 4 A 133 THR MET SER ALA PRO TYR LEU SER GLN LEU ARG SER GLY SEQRES 5 A 133 ASN ARG THR ASN PRO SER GLY ALA THR MET ALA ALA LEU SEQRES 6 A 133 ALA ASN PHE PHE ARG ILE LYS ALA ALA TYR PHE THR ASP SEQRES 7 A 133 ASP GLU TYR TYR GLU LYS LEU ASP LYS GLU LEU GLN TRP SEQRES 8 A 133 LEU CYS THR MET ARG ASP ASP GLY VAL ARG ARG ILE ALA SEQRES 9 A 133 GLN ARG ALA HIS GLY LEU PRO SER ALA ALA GLN GLN LYS SEQRES 10 A 133 VAL LEU ASP ARG ILE ASP GLU LEU ARG ARG ALA GLU GLY SEQRES 11 A 133 ILE ASP ALA SEQRES 1 D 133 GLY SER SER THR THR PHE ALA ALA ARG LEU ASN ARG LEU SEQRES 2 D 133 PHE ASP THR VAL TYR PRO PRO GLY ARG GLY PRO HIS THR SEQRES 3 D 133 SER ALA GLU VAL ILE ALA ALA LEU LYS ALA GLU GLY ILE SEQRES 4 D 133 THR MET SER ALA PRO TYR LEU SER GLN LEU ARG SER GLY SEQRES 5 D 133 ASN ARG THR ASN PRO SER GLY ALA THR MET ALA ALA LEU SEQRES 6 D 133 ALA ASN PHE PHE ARG ILE LYS ALA ALA TYR PHE THR ASP SEQRES 7 D 133 ASP GLU TYR TYR GLU LYS LEU ASP LYS GLU LEU GLN TRP SEQRES 8 D 133 LEU CYS THR MET ARG ASP ASP GLY VAL ARG ARG ILE ALA SEQRES 9 D 133 GLN ARG ALA HIS GLY LEU PRO SER ALA ALA GLN GLN LYS SEQRES 10 D 133 VAL LEU ASP ARG ILE ASP GLU LEU ARG ARG ALA GLU GLY SEQRES 11 D 133 ILE ASP ALA SEQRES 1 B 133 GLY SER SER THR THR PHE ALA ALA ARG LEU ASN ARG LEU SEQRES 2 B 133 PHE ASP THR VAL TYR PRO PRO GLY ARG GLY PRO HIS THR SEQRES 3 B 133 SER ALA GLU VAL ILE ALA ALA LEU LYS ALA GLU GLY ILE SEQRES 4 B 133 THR MET SER ALA PRO TYR LEU SER GLN LEU ARG SER GLY SEQRES 5 B 133 ASN ARG THR ASN PRO SER GLY ALA THR MET ALA ALA LEU SEQRES 6 B 133 ALA ASN PHE PHE ARG ILE LYS ALA ALA TYR PHE THR ASP SEQRES 7 B 133 ASP GLU TYR TYR GLU LYS LEU ASP LYS GLU LEU GLN TRP SEQRES 8 B 133 LEU CYS THR MET ARG ASP ASP GLY VAL ARG ARG ILE ALA SEQRES 9 B 133 GLN ARG ALA HIS GLY LEU PRO SER ALA ALA GLN GLN LYS SEQRES 10 B 133 VAL LEU ASP ARG ILE ASP GLU LEU ARG ARG ALA GLU GLY SEQRES 11 B 133 ILE ASP ALA SEQRES 1 C 133 GLY SER SER THR THR PHE ALA ALA ARG LEU ASN ARG LEU SEQRES 2 C 133 PHE ASP THR VAL TYR PRO PRO GLY ARG GLY PRO HIS THR SEQRES 3 C 133 SER ALA GLU VAL ILE ALA ALA LEU LYS ALA GLU GLY ILE SEQRES 4 C 133 THR MET SER ALA PRO TYR LEU SER GLN LEU ARG SER GLY SEQRES 5 C 133 ASN ARG THR ASN PRO SER GLY ALA THR MET ALA ALA LEU SEQRES 6 C 133 ALA ASN PHE PHE ARG ILE LYS ALA ALA TYR PHE THR ASP SEQRES 7 C 133 ASP GLU TYR TYR GLU LYS LEU ASP LYS GLU LEU GLN TRP SEQRES 8 C 133 LEU CYS THR MET ARG ASP ASP GLY VAL ARG ARG ILE ALA SEQRES 9 C 133 GLN ARG ALA HIS GLY LEU PRO SER ALA ALA GLN GLN LYS SEQRES 10 C 133 VAL LEU ASP ARG ILE ASP GLU LEU ARG ARG ALA GLU GLY SEQRES 11 C 133 ILE ASP ALA SEQRES 1 E 133 GLY SER SER THR THR PHE ALA ALA ARG LEU ASN ARG LEU SEQRES 2 E 133 PHE ASP THR VAL TYR PRO PRO GLY ARG GLY PRO HIS THR SEQRES 3 E 133 SER ALA GLU VAL ILE ALA ALA LEU LYS ALA GLU GLY ILE SEQRES 4 E 133 THR MET SER ALA PRO TYR LEU SER GLN LEU ARG SER GLY SEQRES 5 E 133 ASN ARG THR ASN PRO SER GLY ALA THR MET ALA ALA LEU SEQRES 6 E 133 ALA ASN PHE PHE ARG ILE LYS ALA ALA TYR PHE THR ASP SEQRES 7 E 133 ASP GLU TYR TYR GLU LYS LEU ASP LYS GLU LEU GLN TRP SEQRES 8 E 133 LEU CYS THR MET ARG ASP ASP GLY VAL ARG ARG ILE ALA SEQRES 9 E 133 GLN ARG ALA HIS GLY LEU PRO SER ALA ALA GLN GLN LYS SEQRES 10 E 133 VAL LEU ASP ARG ILE ASP GLU LEU ARG ARG ALA GLU GLY SEQRES 11 E 133 ILE ASP ALA SEQRES 1 F 133 GLY SER SER THR THR PHE ALA ALA ARG LEU ASN ARG LEU SEQRES 2 F 133 PHE ASP THR VAL TYR PRO PRO GLY ARG GLY PRO HIS THR SEQRES 3 F 133 SER ALA GLU VAL ILE ALA ALA LEU LYS ALA GLU GLY ILE SEQRES 4 F 133 THR MET SER ALA PRO TYR LEU SER GLN LEU ARG SER GLY SEQRES 5 F 133 ASN ARG THR ASN PRO SER GLY ALA THR MET ALA ALA LEU SEQRES 6 F 133 ALA ASN PHE PHE ARG ILE LYS ALA ALA TYR PHE THR ASP SEQRES 7 F 133 ASP GLU TYR TYR GLU LYS LEU ASP LYS GLU LEU GLN TRP SEQRES 8 F 133 LEU CYS THR MET ARG ASP ASP GLY VAL ARG ARG ILE ALA SEQRES 9 F 133 GLN ARG ALA HIS GLY LEU PRO SER ALA ALA GLN GLN LYS SEQRES 10 F 133 VAL LEU ASP ARG ILE ASP GLU LEU ARG ARG ALA GLU GLY SEQRES 11 F 133 ILE ASP ALA HET LMR A 134 9 HET MLT B 134 9 HET MLT E 134 9 HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETNAM MLT D-MALATE HETSYN LMR L-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 7 LMR C4 H6 O5 FORMUL 8 MLT 2(C4 H6 O5) FORMUL 10 HOH *232(H2 O) HELIX 1 1 THR A 5 VAL A 17 1 13 HELIX 2 2 THR A 26 GLU A 37 1 12 HELIX 3 3 SER A 42 GLY A 52 1 11 HELIX 4 4 SER A 58 ARG A 70 1 13 HELIX 5 5 LYS A 72 PHE A 76 5 5 HELIX 6 6 ASP A 78 ASP A 97 1 20 HELIX 7 7 ASP A 97 HIS A 108 1 12 HELIX 8 8 PRO A 111 GLU A 129 1 19 HELIX 9 9 THR D 5 VAL D 17 1 13 HELIX 10 10 THR D 26 GLU D 37 1 12 HELIX 11 11 SER D 42 GLY D 52 1 11 HELIX 12 12 SER D 58 ARG D 70 1 13 HELIX 13 13 ALA D 73 ASP D 78 1 6 HELIX 14 14 ASP D 78 MET D 95 1 18 HELIX 15 15 ASP D 97 HIS D 108 1 12 HELIX 16 16 PRO D 111 ALA D 128 1 18 HELIX 17 17 THR B 5 VAL B 17 1 13 HELIX 18 18 THR B 26 GLU B 37 1 12 HELIX 19 19 SER B 42 GLY B 52 1 11 HELIX 20 20 SER B 58 ARG B 70 1 13 HELIX 21 21 LYS B 72 PHE B 76 5 5 HELIX 22 22 ASP B 78 ARG B 96 1 19 HELIX 23 23 ASP B 97 HIS B 108 1 12 HELIX 24 24 PRO B 111 GLU B 129 1 19 HELIX 25 25 THR C 5 VAL C 17 1 13 HELIX 26 26 THR C 26 GLU C 37 1 12 HELIX 27 27 SER C 42 GLY C 52 1 11 HELIX 28 28 SER C 58 ARG C 70 1 13 HELIX 29 29 LYS C 72 THR C 77 5 6 HELIX 30 30 ASP C 78 ARG C 96 1 19 HELIX 31 31 ASP C 97 HIS C 108 1 12 HELIX 32 32 PRO C 111 ALA C 128 1 18 HELIX 33 33 THR E 5 VAL E 17 1 13 HELIX 34 34 THR E 26 GLY E 38 1 13 HELIX 35 35 SER E 42 GLY E 52 1 11 HELIX 36 36 SER E 58 ARG E 70 1 13 HELIX 37 37 ALA E 73 ASP E 78 1 6 HELIX 38 38 ASP E 78 ASP E 97 1 20 HELIX 39 39 ASP E 97 GLY E 109 1 13 HELIX 40 40 PRO E 111 GLU E 129 1 19 HELIX 41 41 THR F 5 VAL F 17 1 13 HELIX 42 42 THR F 26 ALA F 36 1 11 HELIX 43 43 SER F 42 GLY F 52 1 11 HELIX 44 44 SER F 58 PHE F 69 1 12 HELIX 45 45 ALA F 73 ASP F 78 1 6 HELIX 46 46 ASP F 78 MET F 95 1 18 HELIX 47 47 ASP F 97 GLY F 109 1 13 HELIX 48 48 PRO F 111 ALA F 128 1 18 CISPEP 1 GLY D 130 ILE D 131 0 -3.31 SITE 1 AC1 8 TYR A 18 PRO A 19 ARG A 70 VAL D 17 SITE 2 AC1 8 TYR D 18 PRO D 19 HIS D 25 PHE D 69 SITE 1 AC2 12 VAL B 17 TYR B 18 PRO B 19 PHE B 69 SITE 2 AC2 12 ARG B 70 HOH B 145 HOH B 212 HOH B 302 SITE 3 AC2 12 VAL C 17 PRO C 19 PHE C 69 ARG C 70 SITE 1 AC3 8 TYR E 18 PRO E 19 PRO E 20 HOH E 145 SITE 2 AC3 8 HOH E 155 HOH E 224 TYR F 18 PRO F 19 CRYST1 52.209 81.702 124.798 90.00 95.80 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019154 0.000000 0.001946 0.00000 SCALE2 0.000000 0.012240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008054 0.00000