HEADER HYDROLASE 21-JAN-11 3QFK TITLE 2.05 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE 5'-NUCLEOTIDASE FROM TITLE 2 STAPHYLOCOCCUS AUREUS IN COMPLEX WITH ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE 5'-NUCLEOTIDASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 STRAIN: NCTC 8325; SOURCE 5 GENE: SAOUHSC_00107; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 15B KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, PHOSPHOESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,S.N.KRISHNA,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA, AUTHOR 2 J.WINSOR,O.KIRYUKHINA,F.BAGNOLI,F.FALUGI,M.BOTTOMLEY,G.GRANDI, AUTHOR 3 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 4 (CSGID) REVDAT 2 08-NOV-17 3QFK 1 REMARK REVDAT 1 09-FEB-11 3QFK 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,S.N.KRISHNA,A.HALAVATY,L.SHUVALOVA, JRNL AUTH 2 I.DUBROVSKA,J.WINSOR,O.KIRYUKHINA,F.BAGNOLI,F.FALUGI, JRNL AUTH 3 M.BOTTOMLEY,G.GRANDI,W.F.ANDERSON, JRNL AUTH 4 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 5 (CSGID) JRNL TITL 2.05 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE 5'-NUCLEOTIDASE JRNL TITL 2 FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH JRNL TITL 3 ALPHA-KETOGLUTARATE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 36636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1928 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.51000 REMARK 3 B22 (A**2) : 2.37000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.471 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4355 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2877 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5928 ; 1.426 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7014 ; 0.818 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 2.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;34.013 ;24.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ; 9.207 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ; 7.853 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4985 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 911 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 1.101 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1062 ; 0.313 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4289 ; 1.900 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1724 ; 3.090 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1639 ; 4.594 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3864 37.6097 24.2687 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.0519 REMARK 3 T33: 0.1224 T12: 0.0565 REMARK 3 T13: -0.0183 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.2855 L22: 0.9546 REMARK 3 L33: 1.5153 L12: -0.1424 REMARK 3 L13: -0.1176 L23: 0.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.1411 S12: -0.0562 S13: 0.1604 REMARK 3 S21: 0.0527 S22: 0.0586 S23: -0.1247 REMARK 3 S31: -0.1316 S32: 0.0411 S33: 0.0825 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 265 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6174 30.2287 10.2043 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1046 REMARK 3 T33: 0.1035 T12: 0.0209 REMARK 3 T13: 0.0317 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.3204 L22: 0.8632 REMARK 3 L33: 1.2193 L12: -0.4346 REMARK 3 L13: 0.3624 L23: 0.2329 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: 0.1738 S13: -0.1561 REMARK 3 S21: -0.0740 S22: -0.0168 S23: -0.0502 REMARK 3 S31: 0.0034 S32: -0.0527 S33: 0.1008 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9894 41.6003 19.5019 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2033 REMARK 3 T33: 0.1278 T12: 0.0607 REMARK 3 T13: 0.0004 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.7700 L22: 2.6629 REMARK 3 L33: 1.1267 L12: 0.3150 REMARK 3 L13: -0.1558 L23: 1.3750 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: 0.1915 S13: -0.0088 REMARK 3 S21: -0.2895 S22: 0.0104 S23: 0.2018 REMARK 3 S31: -0.0178 S32: -0.1609 S33: 0.0428 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3374 58.4407 21.6549 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.1355 REMARK 3 T33: 0.1641 T12: 0.1084 REMARK 3 T13: 0.0480 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 2.0591 L22: 4.9493 REMARK 3 L33: 1.4560 L12: -0.8053 REMARK 3 L13: 0.3336 L23: -0.1418 REMARK 3 S TENSOR REMARK 3 S11: 0.1461 S12: 0.1436 S13: 0.2329 REMARK 3 S21: -0.1029 S22: -0.1473 S23: -0.2314 REMARK 3 S31: -0.0381 S32: 0.1124 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 511 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0129 46.5489 28.1360 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.1378 REMARK 3 T33: 0.1261 T12: 0.0665 REMARK 3 T13: 0.0390 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.3720 L22: 2.9183 REMARK 3 L33: 2.2761 L12: -0.2715 REMARK 3 L13: -0.5472 L23: -0.8513 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.0608 S13: 0.0189 REMARK 3 S21: 0.0244 S22: -0.0026 S23: 0.4314 REMARK 3 S31: 0.1046 S32: -0.2592 S33: -0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40617 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.1 MG/ML, 0.25M SODIUM REMARK 280 CHLORIDE, TRIS-HCL PH 8.3, SCREEN: PEGS II (C11), 0.2M LITHIUM REMARK 280 SULFATE, 0.1M TRIS PH 8.5, 20% PEG 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.22200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.34450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.22200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.34450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 TYR A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 78.80 -68.50 REMARK 500 HIS A 70 -95.76 -115.07 REMARK 500 ASN A 122 -122.79 65.11 REMARK 500 HIS A 231 -45.41 72.71 REMARK 500 LYS A 241 -122.65 57.17 REMARK 500 PRO A 248 42.73 -96.80 REMARK 500 GLU A 266 25.22 81.28 REMARK 500 MSE A 312 40.63 -143.86 REMARK 500 GLN A 444 -107.19 -115.50 REMARK 500 TYR A 469 58.90 -105.90 REMARK 500 TYR A 469 61.60 -105.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 513 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 93 OD1 REMARK 620 2 ASP A 56 OD2 100.5 REMARK 620 3 HIS A 191 NE2 102.1 91.7 REMARK 620 4 HIS A 231 ND1 90.2 164.4 97.2 REMARK 620 5 HOH A 623 O 132.5 81.2 125.4 83.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 512 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 HIS A 13 NE2 110.2 REMARK 620 3 ASP A 56 OD2 88.4 93.1 REMARK 620 4 HOH A 623 O 97.2 152.5 86.1 REMARK 620 5 HIS A 233 NE2 89.4 94.2 172.7 87.3 REMARK 620 6 HOH A 720 O 165.6 84.1 92.1 68.5 88.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 516 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP91106 RELATED DB: TARGETDB DBREF 3QFK A 2 511 UNP Q2G1L5 Q2G1L5_STAA8 2 511 SEQADV 3QFK MSE A -15 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK GLY A -14 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK SER A -13 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK SER A -12 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK HIS A -11 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK HIS A -10 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK HIS A -9 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK TYR A -8 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK HIS A -7 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK HIS A -6 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK GLU A -5 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK ASN A -4 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK LEU A -3 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK TYR A -2 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK PHE A -1 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK GLN A 0 UNP Q2G1L5 EXPRESSION TAG SEQADV 3QFK GLY A 1 UNP Q2G1L5 EXPRESSION TAG SEQRES 1 A 527 MSE GLY SER SER HIS HIS HIS TYR HIS HIS GLU ASN LEU SEQRES 2 A 527 TYR PHE GLN GLY SER ASN ILE ALA PHE TYR VAL VAL SER SEQRES 3 A 527 ASP VAL HIS GLY TYR ILE PHE PRO THR ASP PHE THR SER SEQRES 4 A 527 ARG ASN GLN TYR GLN PRO MSE GLY LEU LEU LEU ALA ASN SEQRES 5 A 527 HIS VAL ILE GLU GLN ASP ARG ARG GLN TYR ASP GLN SER SEQRES 6 A 527 PHE LYS ILE ASP ASN GLY ASP PHE LEU GLN GLY SER PRO SEQRES 7 A 527 PHE CYS ASN TYR LEU ILE ALA HIS SER GLY SER SER GLN SEQRES 8 A 527 PRO LEU VAL ASP PHE TYR ASN ARG MSE ALA PHE ASP PHE SEQRES 9 A 527 GLY THR LEU GLY ASN HIS GLU PHE ASN TYR GLY LEU PRO SEQRES 10 A 527 TYR LEU LYS ASP THR LEU ARG ARG LEU ASN TYR PRO VAL SEQRES 11 A 527 LEU CYS ALA ASN ILE TYR GLU ASN ASP SER THR LEU THR SEQRES 12 A 527 ASP ASN GLY VAL LYS TYR PHE GLN VAL GLY ASP GLN THR SEQRES 13 A 527 VAL GLY VAL ILE GLY LEU THR THR GLN PHE ILE PRO HIS SEQRES 14 A 527 TRP GLU GLN PRO GLU HIS ILE GLN SER LEU THR PHE HIS SEQRES 15 A 527 SER ALA PHE GLU ILE LEU GLN GLN TYR LEU PRO GLU MSE SEQRES 16 A 527 LYS ARG HIS ALA ASP ILE ILE VAL VAL CYS TYR HIS GLY SEQRES 17 A 527 GLY PHE GLU LYS ASP LEU GLU SER GLY THR PRO THR GLU SEQRES 18 A 527 VAL LEU THR GLY GLU ASN GLU GLY TYR ALA MSE LEU GLU SEQRES 19 A 527 ALA PHE SER LYS ASP ILE ASP ILE PHE ILE THR GLY HIS SEQRES 20 A 527 GLN HIS ARG GLN ILE ALA GLU ARG PHE LYS GLN THR ALA SEQRES 21 A 527 VAL ILE GLN PRO GLY THR ARG GLY THR THR VAL GLY ARG SEQRES 22 A 527 VAL VAL LEU SER THR ASP GLU TYR GLU ASN LEU SER VAL SEQRES 23 A 527 GLU SER CYS GLU LEU LEU PRO VAL ILE ASP ASP SER THR SEQRES 24 A 527 PHE THR ILE ASP GLU ASP ASP GLN HIS LEU ARG LYS GLN SEQRES 25 A 527 LEU GLU ASP TRP LEU ASP TYR GLU ILE THR THR LEU PRO SEQRES 26 A 527 TYR ASP MSE THR ILE ASN HIS ALA PHE GLU ALA ARG VAL SEQRES 27 A 527 ALA PRO HIS PRO PHE THR ASN PHE MSE ASN TYR ALA LEU SEQRES 28 A 527 LEU GLU LYS SER ASP ALA ASP VAL ALA CYS THR ALA LEU SEQRES 29 A 527 PHE ASP SER ALA SER GLY PHE LYS GLN VAL VAL THR MSE SEQRES 30 A 527 ARG ASP VAL ILE ASN ASN TYR PRO PHE PRO ASN THR PHE SEQRES 31 A 527 LYS VAL LEU ALA VAL SER GLY ALA LYS LEU LYS GLU ALA SEQRES 32 A 527 ILE GLU ARG SER ALA GLU TYR PHE ASP VAL LYS ASN ASP SEQRES 33 A 527 GLU VAL SER VAL SER ALA ASP PHE LEU GLU PRO LYS PRO SEQRES 34 A 527 GLN HIS PHE ASN TYR ASP ILE TYR GLY GLY VAL SER TYR SEQRES 35 A 527 THR ILE HIS VAL GLY ARG PRO LYS GLY GLN ARG VAL SER SEQRES 36 A 527 ASN MSE MSE ILE GLN GLY HIS ALA VAL ASP LEU LYS GLN SEQRES 37 A 527 THR TYR THR ILE CYS VAL ASN ASN TYR ARG ALA VAL GLY SEQRES 38 A 527 GLY GLY GLN TYR ASP MSE TYR ILE ASP ALA PRO VAL VAL SEQRES 39 A 527 LYS ASP ILE GLN VAL GLU GLY ALA GLN LEU LEU ILE ASP SEQRES 40 A 527 PHE LEU SER ASN ASN ASN LEU MSE ARG ILE PRO GLN VAL SEQRES 41 A 527 VAL ASP PHE LYS VAL GLU LYS MODRES 3QFK MSE A 30 MET SELENOMETHIONINE MODRES 3QFK MSE A 84 MET SELENOMETHIONINE MODRES 3QFK MSE A 179 MET SELENOMETHIONINE MODRES 3QFK MSE A 216 MET SELENOMETHIONINE MODRES 3QFK MSE A 312 MET SELENOMETHIONINE MODRES 3QFK MSE A 331 MET SELENOMETHIONINE MODRES 3QFK MSE A 361 MET SELENOMETHIONINE MODRES 3QFK MSE A 441 MET SELENOMETHIONINE MODRES 3QFK MSE A 442 MET SELENOMETHIONINE MODRES 3QFK MSE A 471 MET SELENOMETHIONINE MODRES 3QFK MSE A 499 MET SELENOMETHIONINE HET MSE A 30 8 HET MSE A 84 8 HET MSE A 179 8 HET MSE A 216 8 HET MSE A 312 8 HET MSE A 331 8 HET MSE A 361 8 HET MSE A 441 8 HET MSE A 442 16 HET MSE A 471 8 HET MSE A 499 8 HET ZN A 512 1 HET MN A 513 1 HET AKG A 514 10 HET PEG A 515 7 HET EDO A 516 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 MN MN 2+ FORMUL 4 AKG C5 H6 O5 FORMUL 5 PEG C4 H10 O3 FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *227(H2 O) HELIX 1 1 GLY A 31 ARG A 44 1 14 HELIX 2 2 SER A 61 HIS A 70 1 10 HELIX 3 3 SER A 74 MSE A 84 1 11 HELIX 4 4 GLY A 92 ASN A 97 5 6 HELIX 5 5 GLY A 99 LEU A 110 1 12 HELIX 6 6 PHE A 150 TRP A 154 5 5 HELIX 7 7 GLN A 156 GLN A 161 1 6 HELIX 8 8 SER A 167 ALA A 183 1 17 HELIX 9 9 GLU A 212 SER A 221 1 10 HELIX 10 10 LYS A 222 ILE A 224 5 3 HELIX 11 11 ASP A 287 ASP A 302 1 16 HELIX 12 12 PHE A 318 ALA A 323 1 6 HELIX 13 13 HIS A 325 ASP A 340 1 16 HELIX 14 14 MSE A 361 TYR A 368 1 8 HELIX 15 15 GLY A 381 GLU A 393 1 13 HELIX 16 16 ALA A 406 LEU A 409 5 4 HELIX 17 17 GLN A 414 ASN A 417 5 4 HELIX 18 18 ASN A 460 VAL A 464 1 5 HELIX 19 19 TYR A 469 ILE A 473 5 5 HELIX 20 20 GLU A 484 ASN A 496 1 13 SHEET 1 A 5 PHE A 88 GLY A 89 0 SHEET 2 A 5 GLN A 48 ASP A 53 1 N ASP A 53 O PHE A 88 SHEET 3 A 5 ASN A 3 VAL A 9 1 N TYR A 7 O PHE A 50 SHEET 4 A 5 THR A 254 THR A 262 -1 O VAL A 258 N PHE A 6 SHEET 5 A 5 LEU A 268 PRO A 277 -1 O LEU A 276 N VAL A 255 SHEET 1 B 3 SER A 124 THR A 125 0 SHEET 2 B 3 ILE A 119 GLU A 121 -1 N GLU A 121 O SER A 124 SHEET 3 B 3 LEU A 163 PHE A 165 -1 O THR A 164 N TYR A 120 SHEET 1 C 6 VAL A 131 VAL A 136 0 SHEET 2 C 6 GLN A 139 THR A 147 -1 O VAL A 141 N PHE A 134 SHEET 3 C 6 ILE A 185 HIS A 191 1 O VAL A 187 N GLY A 142 SHEET 4 C 6 ILE A 226 ILE A 228 1 O ILE A 228 N VAL A 188 SHEET 5 C 6 THR A 243 PRO A 248 1 O ALA A 244 N PHE A 227 SHEET 6 C 6 GLN A 235 PHE A 240 -1 N GLU A 238 O VAL A 245 SHEET 1 D 2 GLU A 304 THR A 307 0 SHEET 2 D 2 VAL A 358 THR A 360 -1 O VAL A 359 N ILE A 305 SHEET 1 E 2 MSE A 312 THR A 313 0 SHEET 2 E 2 GLY A 354 PHE A 355 -1 O PHE A 355 N MSE A 312 SHEET 1 F 5 ASP A 419 GLY A 422 0 SHEET 2 F 5 VAL A 343 ALA A 347 -1 N THR A 346 O ILE A 420 SHEET 3 F 5 THR A 453 ASN A 459 1 O CYS A 457 N VAL A 343 SHEET 4 F 5 PHE A 374 SER A 380 -1 N VAL A 379 O TYR A 454 SHEET 5 F 5 VAL A 477 ILE A 481 -1 O ILE A 481 N PHE A 374 SHEET 1 G 2 PHE A 395 LYS A 398 0 SHEET 2 G 2 GLU A 401 VAL A 404 -1 O SER A 403 N ASP A 396 SHEET 1 H 3 VAL A 438 MSE A 442 0 SHEET 2 H 3 SER A 425 HIS A 429 -1 N SER A 425 O MSE A 442 SHEET 3 H 3 ASP A 506 GLU A 510 1 O LYS A 508 N ILE A 428 LINK C PRO A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N GLY A 31 1555 1555 1.32 LINK C AARG A 83 N MSE A 84 1555 1555 1.34 LINK C BARG A 83 N MSE A 84 1555 1555 1.34 LINK C MSE A 84 N ALA A 85 1555 1555 1.32 LINK C AGLU A 178 N MSE A 179 1555 1555 1.33 LINK C BGLU A 178 N MSE A 179 1555 1555 1.34 LINK C MSE A 179 N LYS A 180 1555 1555 1.33 LINK C ALA A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N LEU A 217 1555 1555 1.33 LINK C ASP A 311 N MSE A 312 1555 1555 1.34 LINK C MSE A 312 N THR A 313 1555 1555 1.32 LINK C PHE A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N ASN A 332 1555 1555 1.33 LINK C THR A 360 N MSE A 361 1555 1555 1.34 LINK C MSE A 361 N ARG A 362 1555 1555 1.34 LINK C ASN A 440 N MSE A 441 1555 1555 1.33 LINK C MSE A 441 N AMSE A 442 1555 1555 1.33 LINK C MSE A 441 N BMSE A 442 1555 1555 1.34 LINK C AMSE A 442 N AILE A 443 1555 1555 1.32 LINK C BMSE A 442 N BILE A 443 1555 1555 1.33 LINK C AASP A 470 N MSE A 471 1555 1555 1.34 LINK C BASP A 470 N MSE A 471 1555 1555 1.33 LINK C MSE A 471 N TYR A 472 1555 1555 1.34 LINK C LEU A 498 N MSE A 499 1555 1555 1.33 LINK C MSE A 499 N ARG A 500 1555 1555 1.33 LINK OD1 ASN A 93 MN MN A 513 1555 1555 2.16 LINK OD1 ASP A 11 ZN ZN A 512 1555 1555 2.20 LINK NE2 HIS A 13 ZN ZN A 512 1555 1555 2.29 LINK OD2 ASP A 56 ZN ZN A 512 1555 1555 2.29 LINK ZN ZN A 512 O HOH A 623 1555 1555 2.36 LINK NE2 HIS A 233 ZN ZN A 512 1555 1555 2.39 LINK OD2 ASP A 56 MN MN A 513 1555 1555 2.40 LINK NE2 HIS A 191 MN MN A 513 1555 1555 2.41 LINK ZN ZN A 512 O HOH A 720 1555 1555 2.41 LINK ND1 HIS A 231 MN MN A 513 1555 1555 2.47 LINK MN MN A 513 O HOH A 623 1555 1555 2.47 CISPEP 1 GLU A 410 PRO A 411 0 -1.73 SITE 1 AC1 7 ASP A 11 HIS A 13 ASP A 56 HIS A 233 SITE 2 AC1 7 MN A 513 HOH A 623 HOH A 720 SITE 1 AC2 6 ASP A 56 ASN A 93 HIS A 191 HIS A 231 SITE 2 AC2 6 ZN A 512 HOH A 623 SITE 1 AC3 8 HIS A 94 PHE A 370 ASN A 372 PHE A 416 SITE 2 AC3 8 TYR A 461 HOH A 548 HOH A 687 HOH A 723 SITE 1 AC4 6 ASN A 82 ASN A 111 SER A 425 MSE A 442 SITE 2 AC4 6 ASP A 506 HOH A 602 SITE 1 AC5 6 PHE A 349 ASP A 350 PRO A 413 GLN A 414 SITE 2 AC5 6 HIS A 415 PHE A 416 CRYST1 90.444 84.689 95.966 90.00 116.91 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011057 0.000000 0.005612 0.00000 SCALE2 0.000000 0.011808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011686 0.00000