HEADER HYDROLASE 22-JAN-11 3QFN TITLE CRYSTAL STRUCTURE OF STREPTOCOCCAL ASYMMETRIC AP4A HYDROLASE AND TITLE 2 PHOSPHODIESTERASE SPR1479/SAPH IN COMPLEX WITH INORGANIC PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-262; COMPND 5 SYNONYM: SAPH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 GENE: SPR1479; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28 KEYWDS SANDWICH FOLD, HYDROLASE, FE3+, MN2+, PO4 EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.JIANG,J.W.ZHANG,W.L.YU,W.CHENG,C.C.ZHANG,C.Z.ZHOU,Y.CHEN REVDAT 2 01-NOV-23 3QFN 1 REMARK SEQADV LINK REVDAT 1 24-AUG-11 3QFN 0 JRNL AUTH Y.L.JIANG,J.W.ZHANG,W.L.YU,W.CHENG,C.C.ZHANG,C.FROLET, JRNL AUTH 2 A.-M.DI-GUILMI,T.VERNET,C.Z.ZHOU,Y.CHEN JRNL TITL STRUCTURAL AND ENZYMATIC CHARACTERIZATION OF A STREPTOCOCCAL JRNL TITL 2 ATP/DIADENOSINE POLYPHOSPHATE AND PHOSPHODIESTER HYDROLASE JRNL TITL 3 SPR1479/SAPH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 26450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1697 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.77000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : -2.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4142 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5620 ; 1.324 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;35.194 ;23.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;15.211 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3174 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2470 ; 0.646 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3982 ; 1.229 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 1.975 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1638 ; 3.281 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : 0.51700 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% ISO-PROPANOL, 0.1M HEPES, PH 7.5, REMARK 280 0.2M NH4AC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.44150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.66300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.46750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.66300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.44150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.46750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 THR A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 GLN A 257 REMARK 465 GLU A 258 REMARK 465 PHE A 259 REMARK 465 LEU A 260 REMARK 465 ARG A 261 REMARK 465 GLU A 262 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 THR B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 GLN B 257 REMARK 465 GLU B 258 REMARK 465 PHE B 259 REMARK 465 LEU B 260 REMARK 465 ARG B 261 REMARK 465 GLU B 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PO4 B 263 O HOH B 266 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 64.69 61.73 REMARK 500 MET A 42 141.43 81.54 REMARK 500 ARG A 47 -104.48 -132.06 REMARK 500 HIS A 129 -110.04 -129.74 REMARK 500 HIS A 164 -38.85 75.05 REMARK 500 HIS A 166 35.46 72.83 REMARK 500 ARG A 171 -157.46 -141.37 REMARK 500 ASP B 39 67.73 60.71 REMARK 500 MET B 42 146.22 79.70 REMARK 500 ARG B 47 -104.26 -139.87 REMARK 500 HIS B 129 -117.08 -133.64 REMARK 500 LYS B 133 98.71 -165.42 REMARK 500 HIS B 164 -46.32 75.08 REMARK 500 ARG B 171 -156.96 -142.14 REMARK 500 GLN B 187 59.93 -152.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 265 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 HIS A 13 NE2 115.6 REMARK 620 3 ASP A 39 OD2 87.7 102.3 REMARK 620 4 HIS A 166 NE2 82.7 94.3 163.2 REMARK 620 5 PO4 A 263 O2 153.0 90.8 92.4 90.0 REMARK 620 6 HOH A 266 O 82.1 161.5 71.5 93.4 72.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 264 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 39 OD2 REMARK 620 2 ASN A 66 OD1 104.3 REMARK 620 3 HIS A 128 NE2 88.7 89.6 REMARK 620 4 HIS A 164 ND1 155.1 100.4 88.4 REMARK 620 5 PO4 A 263 O1 90.7 95.0 175.3 90.2 REMARK 620 6 HOH A 266 O 67.0 164.0 103.2 89.7 72.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 265 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD2 REMARK 620 2 HIS B 13 NE2 114.2 REMARK 620 3 ASP B 39 OD2 83.3 103.6 REMARK 620 4 HIS B 166 NE2 95.8 91.0 164.4 REMARK 620 5 PO4 B 263 O2 152.4 93.4 90.5 83.2 REMARK 620 6 HOH B 266 O 90.1 155.7 77.0 87.5 62.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 264 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 39 OD2 REMARK 620 2 ASN B 66 OD1 101.3 REMARK 620 3 HIS B 128 NE2 91.5 91.2 REMARK 620 4 HIS B 164 ND1 157.6 101.0 86.6 REMARK 620 5 PO4 B 263 O1 92.1 89.6 176.0 89.4 REMARK 620 6 HOH B 266 O 74.0 157.4 110.8 85.8 68.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QFM RELATED DB: PDB REMARK 900 RELATED ID: 3QFO RELATED DB: PDB DBREF 3QFN A 1 262 UNP Q8DNX4 Q8DNX4_STRR6 1 262 DBREF 3QFN B 1 262 UNP Q8DNX4 Q8DNX4_STRR6 1 262 SEQADV 3QFN MET A -7 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN GLY A -6 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS A -5 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS A -4 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS A -3 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS A -2 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS A -1 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS A 0 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN MET B -7 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN GLY B -6 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS B -5 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS B -4 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS B -3 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS B -2 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS B -1 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFN HIS B 0 UNP Q8DNX4 EXPRESSION TAG SEQRES 1 A 270 MET GLY HIS HIS HIS HIS HIS HIS MET ASP MET THR LYS SEQRES 2 A 270 ILE ALA LEU LEU SER ASP ILE HIS GLY ASN THR THR ALA SEQRES 3 A 270 LEU GLU ALA VAL LEU ALA ASP ALA ARG GLN LEU GLY VAL SEQRES 4 A 270 ASP GLU TYR TRP LEU LEU GLY ASP ILE LEU MET PRO GLY SEQRES 5 A 270 THR GLY ARG ARG ARG ILE LEU ASP LEU LEU ASP GLN LEU SEQRES 6 A 270 PRO ILE THR ALA ARG VAL LEU GLY ASN TRP GLU ASP SER SEQRES 7 A 270 LEU TRP HIS GLY VAL ARG LYS GLU LEU ASP SER THR ARG SEQRES 8 A 270 PRO SER GLN ARG TYR LEU LEU ARG GLN CYS GLN TYR VAL SEQRES 9 A 270 LEU GLU GLU ILE SER LEU GLU GLU ILE GLU VAL LEU HIS SEQRES 10 A 270 ASN GLN PRO LEU GLN ILE HIS ARG GLN PHE GLY ASP LEU SEQRES 11 A 270 THR VAL GLY ILE SER HIS HIS LEU PRO ASP LYS ASN TRP SEQRES 12 A 270 GLY ARG GLU LEU ILE HIS THR GLY LYS GLN GLU GLU PHE SEQRES 13 A 270 ASP ARG LEU VAL THR HIS PRO PRO CYS ASP ILE ALA VAL SEQRES 14 A 270 TYR GLY HIS ILE HIS GLN GLN LEU LEU ARG TYR GLY THR SEQRES 15 A 270 GLY GLY GLN LEU ILE VAL ASN PRO GLY SER ILE GLY GLN SEQRES 16 A 270 PRO PHE PHE LEU ASP ALA GLN LEU ARG LYS ASP LEU ARG SEQRES 17 A 270 ALA GLN TYR MET ILE LEU GLU PHE ASP ASP LYS GLY LEU SEQRES 18 A 270 VAL ASP MET ASP PHE ARG ARG VAL ASP TYR ASP VAL ALA SEQRES 19 A 270 ALA GLU LEU GLN LEU ALA LYS ASP LEU ARG LEU PRO TYR SEQRES 20 A 270 PHE GLU VAL TYR TYR GLU SER LEU VAL ASN GLY ILE HIS SEQRES 21 A 270 HIS THR HIS HIS GLN GLU PHE LEU ARG GLU SEQRES 1 B 270 MET GLY HIS HIS HIS HIS HIS HIS MET ASP MET THR LYS SEQRES 2 B 270 ILE ALA LEU LEU SER ASP ILE HIS GLY ASN THR THR ALA SEQRES 3 B 270 LEU GLU ALA VAL LEU ALA ASP ALA ARG GLN LEU GLY VAL SEQRES 4 B 270 ASP GLU TYR TRP LEU LEU GLY ASP ILE LEU MET PRO GLY SEQRES 5 B 270 THR GLY ARG ARG ARG ILE LEU ASP LEU LEU ASP GLN LEU SEQRES 6 B 270 PRO ILE THR ALA ARG VAL LEU GLY ASN TRP GLU ASP SER SEQRES 7 B 270 LEU TRP HIS GLY VAL ARG LYS GLU LEU ASP SER THR ARG SEQRES 8 B 270 PRO SER GLN ARG TYR LEU LEU ARG GLN CYS GLN TYR VAL SEQRES 9 B 270 LEU GLU GLU ILE SER LEU GLU GLU ILE GLU VAL LEU HIS SEQRES 10 B 270 ASN GLN PRO LEU GLN ILE HIS ARG GLN PHE GLY ASP LEU SEQRES 11 B 270 THR VAL GLY ILE SER HIS HIS LEU PRO ASP LYS ASN TRP SEQRES 12 B 270 GLY ARG GLU LEU ILE HIS THR GLY LYS GLN GLU GLU PHE SEQRES 13 B 270 ASP ARG LEU VAL THR HIS PRO PRO CYS ASP ILE ALA VAL SEQRES 14 B 270 TYR GLY HIS ILE HIS GLN GLN LEU LEU ARG TYR GLY THR SEQRES 15 B 270 GLY GLY GLN LEU ILE VAL ASN PRO GLY SER ILE GLY GLN SEQRES 16 B 270 PRO PHE PHE LEU ASP ALA GLN LEU ARG LYS ASP LEU ARG SEQRES 17 B 270 ALA GLN TYR MET ILE LEU GLU PHE ASP ASP LYS GLY LEU SEQRES 18 B 270 VAL ASP MET ASP PHE ARG ARG VAL ASP TYR ASP VAL ALA SEQRES 19 B 270 ALA GLU LEU GLN LEU ALA LYS ASP LEU ARG LEU PRO TYR SEQRES 20 B 270 PHE GLU VAL TYR TYR GLU SER LEU VAL ASN GLY ILE HIS SEQRES 21 B 270 HIS THR HIS HIS GLN GLU PHE LEU ARG GLU HET PO4 A 263 5 HET MN A 264 1 HET FE A 265 1 HET PO4 B 263 5 HET MN B 264 1 HET FE B 265 1 HETNAM PO4 PHOSPHATE ION HETNAM MN MANGANESE (II) ION HETNAM FE FE (III) ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MN 2(MN 2+) FORMUL 5 FE 2(FE 3+) FORMUL 9 HOH *211(H2 O) HELIX 1 1 ASN A 15 LEU A 29 1 15 HELIX 2 2 ARG A 47 GLN A 56 1 10 HELIX 3 3 GLY A 65 ARG A 76 1 12 HELIX 4 4 ARG A 83 GLU A 98 1 16 HELIX 5 5 SER A 101 ASN A 110 1 10 HELIX 6 6 LYS A 144 ARG A 150 1 7 HELIX 7 7 GLN A 194 ASP A 198 5 5 HELIX 8 8 ASP A 224 ARG A 236 1 13 HELIX 9 9 TYR A 239 ASN A 249 1 11 HELIX 10 10 ASN B 15 LEU B 29 1 15 HELIX 11 11 ARG B 47 GLN B 56 1 10 HELIX 12 12 GLY B 65 ARG B 76 1 12 HELIX 13 13 ARG B 83 GLU B 98 1 16 HELIX 14 14 SER B 101 ASN B 110 1 10 HELIX 15 15 LYS B 144 ASP B 149 1 6 HELIX 16 16 ARG B 150 VAL B 152 5 3 HELIX 17 17 ASP B 192 LYS B 197 1 6 HELIX 18 18 ASP B 224 LEU B 235 1 12 HELIX 19 19 TYR B 239 ASN B 249 1 11 SHEET 1 A10 ILE A 59 ARG A 62 0 SHEET 2 A10 GLU A 33 LEU A 36 1 N LEU A 36 O ALA A 61 SHEET 3 A10 THR A 4 LEU A 9 1 N LEU A 9 O TRP A 35 SHEET 4 A10 ALA A 201 ASP A 209 -1 O LEU A 206 N ILE A 6 SHEET 5 A10 GLY A 212 VAL A 221 -1 O ASP A 217 N ILE A 205 SHEET 6 A10 GLY B 212 VAL B 221 -1 O PHE B 218 N MET A 216 SHEET 7 A10 ALA B 201 ASP B 209 -1 N ASP B 209 O GLY B 212 SHEET 8 A10 THR B 4 LEU B 9 -1 N THR B 4 O PHE B 208 SHEET 9 A10 GLU B 33 LEU B 36 1 O TRP B 35 N ALA B 7 SHEET 10 A10 ILE B 59 ARG B 62 1 O ALA B 61 N LEU B 36 SHEET 1 B 5 GLN A 114 PHE A 119 0 SHEET 2 B 5 LEU A 122 SER A 127 -1 O LEU A 122 N PHE A 119 SHEET 3 B 5 ILE A 159 VAL A 161 1 O ILE A 159 N GLY A 125 SHEET 4 B 5 LEU A 178 PRO A 182 1 O LEU A 178 N ALA A 160 SHEET 5 B 5 GLN A 168 TYR A 172 -1 N ARG A 171 O ILE A 179 SHEET 1 C 5 GLN B 114 PHE B 119 0 SHEET 2 C 5 LEU B 122 SER B 127 -1 O VAL B 124 N ARG B 117 SHEET 3 C 5 ILE B 159 VAL B 161 1 O VAL B 161 N GLY B 125 SHEET 4 C 5 LEU B 178 PRO B 182 1 O LEU B 178 N ALA B 160 SHEET 5 C 5 GLN B 168 TYR B 172 -1 N ARG B 171 O ILE B 179 LINK OD2 ASP A 11 FE FE A 265 1555 1555 2.13 LINK NE2 HIS A 13 FE FE A 265 1555 1555 2.25 LINK OD2 ASP A 39 MN MN A 264 1555 1555 2.32 LINK OD2 ASP A 39 FE FE A 265 1555 1555 2.14 LINK OD1 ASN A 66 MN MN A 264 1555 1555 2.12 LINK NE2 HIS A 128 MN MN A 264 1555 1555 2.18 LINK ND1 HIS A 164 MN MN A 264 1555 1555 2.29 LINK NE2 HIS A 166 FE FE A 265 1555 1555 2.25 LINK O1 PO4 A 263 MN MN A 264 1555 1555 2.04 LINK O2 PO4 A 263 FE FE A 265 1555 1555 2.19 LINK MN MN A 264 O HOH A 266 1555 1555 2.10 LINK FE FE A 265 O HOH A 266 1555 1555 2.04 LINK OD2 ASP B 11 FE FE B 265 1555 1555 2.20 LINK NE2 HIS B 13 FE FE B 265 1555 1555 2.21 LINK OD2 ASP B 39 MN MN B 264 1555 1555 2.07 LINK OD2 ASP B 39 FE FE B 265 1555 1555 2.29 LINK OD1 ASN B 66 MN MN B 264 1555 1555 2.19 LINK NE2 HIS B 128 MN MN B 264 1555 1555 2.18 LINK ND1 HIS B 164 MN MN B 264 1555 1555 2.26 LINK NE2 HIS B 166 FE FE B 265 1555 1555 2.31 LINK O1 PO4 B 263 MN MN B 264 1555 1555 2.06 LINK O2 PO4 B 263 FE FE B 265 1555 1555 2.01 LINK MN MN B 264 O HOH B 266 1555 1555 2.36 LINK FE FE B 265 O HOH B 266 1555 1555 2.00 CISPEP 1 MET A 42 PRO A 43 0 2.80 CISPEP 2 HIS A 154 PRO A 155 0 4.37 CISPEP 3 MET B 42 PRO B 43 0 0.31 CISPEP 4 HIS B 154 PRO B 155 0 -0.70 SITE 1 AC1 10 HIS A 13 ASP A 39 ASN A 66 TRP A 67 SITE 2 AC1 10 HIS A 164 HIS A 166 MN A 264 FE A 265 SITE 3 AC1 10 HOH A 266 HOH A 292 SITE 1 AC2 7 ASP A 39 ASN A 66 HIS A 128 HIS A 164 SITE 2 AC2 7 PO4 A 263 FE A 265 HOH A 266 SITE 1 AC3 7 ASP A 11 HIS A 13 ASP A 39 HIS A 166 SITE 2 AC3 7 PO4 A 263 MN A 264 HOH A 266 SITE 1 AC4 10 HIS B 13 ASP B 39 ASN B 66 TRP B 67 SITE 2 AC4 10 HIS B 164 HIS B 166 MN B 264 FE B 265 SITE 3 AC4 10 HOH B 266 HOH B 278 SITE 1 AC5 7 ASP B 39 ASN B 66 HIS B 128 HIS B 164 SITE 2 AC5 7 PO4 B 263 FE B 265 HOH B 266 SITE 1 AC6 7 ASP B 11 HIS B 13 ASP B 39 HIS B 166 SITE 2 AC6 7 PO4 B 263 MN B 264 HOH B 266 CRYST1 58.883 74.935 149.326 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016983 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006697 0.00000