HEADER CHAPERONE 22-JAN-11 3QFU TITLE CRYSTAL STRUCTURE OF YEAST HSP70 (BIP/KAR2) COMPLEXED WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 78 KDA GLUCOSE-REGULATED PROTEIN HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 43-426; COMPND 5 SYNONYM: GRP-78, IMMUNOGLOBULIN HEAVY CHAIN-BINDING PROTEIN HOMOLOG, COMPND 6 BIP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: KAR2, GRP78, SSD1, YJL034W, J1248; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HSP70, KAR2, BIP, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR M.YAN,J.Z.LI,B.D.SHA REVDAT 3 13-SEP-23 3QFU 1 REMARK SEQADV LINK REVDAT 2 07-SEP-11 3QFU 1 JRNL VERSN REVDAT 1 29-JUN-11 3QFU 0 JRNL AUTH M.YAN,J.LI,B.SHA JRNL TITL STRUCTURAL ANALYSIS OF THE SIL1-BIP COMPLEX REVEALS THE JRNL TITL 2 MECHANISM FOR SIL1 TO FUNCTION AS A NUCLEOTIDE-EXCHANGE JRNL TITL 3 FACTOR. JRNL REF BIOCHEM.J. V. 438 447 2011 JRNL REFN ISSN 0264-6021 JRNL PMID 21675960 JRNL DOI 10.1042/BJ20110500 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 43668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2891 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2940 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3972 ; 0.957 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 4.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;36.525 ;25.760 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;11.584 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2144 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1375 ; 0.167 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2029 ; 0.290 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 303 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.137 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.053 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1906 ; 0.301 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2973 ; 0.532 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1152 ; 0.800 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 999 ; 1.311 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8630 10.2920 13.3160 REMARK 3 T TENSOR REMARK 3 T11: -0.1821 T22: -0.2109 REMARK 3 T33: -0.0550 T12: -0.0704 REMARK 3 T13: -0.0591 T23: 0.0672 REMARK 3 L TENSOR REMARK 3 L11: 0.6430 L22: 1.0714 REMARK 3 L33: 1.0583 L12: -0.1829 REMARK 3 L13: 0.4847 L23: 0.2994 REMARK 3 S TENSOR REMARK 3 S11: 0.1727 S12: -0.0671 S13: -0.1798 REMARK 3 S21: 0.1944 S22: 0.0426 S23: 0.1616 REMARK 3 S31: 0.3137 S32: -0.1942 S33: -0.2154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M MAGNESIUM CHLORIDE, REMARK 280 22% (W/V) PEG 6000 , PH 7, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.68350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.46050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.83350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.46050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.68350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.83350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 MET A 34 REMARK 465 SER A 35 REMARK 465 HIS A 36 REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 HIS A 41 REMARK 465 MET A 42 REMARK 465 ALA A 43 REMARK 465 ASP A 44 REMARK 465 ASP A 45 REMARK 465 VAL A 46 REMARK 465 GLU A 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 73 OH TYR A 180 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 94 O - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 59.18 -146.25 REMARK 500 LYS A 233 43.26 -102.17 REMARK 500 PHE A 399 30.95 -93.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 93 GLU A 94 -144.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 94 15.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O3B REMARK 620 2 PO4 A 502 O1 99.6 REMARK 620 3 HOH A 580 O 89.5 92.0 REMARK 620 4 HOH A 581 O 91.0 95.4 172.4 REMARK 620 5 HOH A 582 O 85.0 175.4 88.4 84.1 REMARK 620 6 HOH A 583 O 169.3 90.5 87.0 91.3 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 427 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QFP RELATED DB: PDB REMARK 900 RELATED ID: 3QML RELATED DB: PDB DBREF 3QFU A 43 426 UNP P16474 GRP78_YEAST 43 426 SEQADV 3QFU GLY A 33 UNP P16474 EXPRESSION TAG SEQADV 3QFU MET A 34 UNP P16474 EXPRESSION TAG SEQADV 3QFU SER A 35 UNP P16474 EXPRESSION TAG SEQADV 3QFU HIS A 36 UNP P16474 EXPRESSION TAG SEQADV 3QFU ALA A 37 UNP P16474 EXPRESSION TAG SEQADV 3QFU SER A 38 UNP P16474 EXPRESSION TAG SEQADV 3QFU GLY A 39 UNP P16474 EXPRESSION TAG SEQADV 3QFU SER A 40 UNP P16474 EXPRESSION TAG SEQADV 3QFU HIS A 41 UNP P16474 EXPRESSION TAG SEQADV 3QFU MET A 42 UNP P16474 EXPRESSION TAG SEQRES 1 A 394 GLY MET SER HIS ALA SER GLY SER HIS MET ALA ASP ASP SEQRES 2 A 394 VAL GLU ASN TYR GLY THR VAL ILE GLY ILE ASP LEU GLY SEQRES 3 A 394 THR THR TYR SER CYS VAL ALA VAL MET LYS ASN GLY LYS SEQRES 4 A 394 THR GLU ILE LEU ALA ASN GLU GLN GLY ASN ARG ILE THR SEQRES 5 A 394 PRO SER TYR VAL ALA PHE THR ASP ASP GLU ARG LEU ILE SEQRES 6 A 394 GLY ASP ALA ALA LYS ASN GLN VAL ALA ALA ASN PRO GLN SEQRES 7 A 394 ASN THR ILE PHE ASP ILE LYS ARG LEU ILE GLY LEU LYS SEQRES 8 A 394 TYR ASN ASP ARG SER VAL GLN LYS ASP ILE LYS HIS LEU SEQRES 9 A 394 PRO PHE ASN VAL VAL ASN LYS ASP GLY LYS PRO ALA VAL SEQRES 10 A 394 GLU VAL SER VAL LYS GLY GLU LYS LYS VAL PHE THR PRO SEQRES 11 A 394 GLU GLU ILE SER GLY MET ILE LEU GLY LYS MET LYS GLN SEQRES 12 A 394 ILE ALA GLU ASP TYR LEU GLY THR LYS VAL THR HIS ALA SEQRES 13 A 394 VAL VAL THR VAL PRO ALA TYR PHE ASN ASP ALA GLN ARG SEQRES 14 A 394 GLN ALA THR LYS ASP ALA GLY THR ILE ALA GLY LEU ASN SEQRES 15 A 394 VAL LEU ARG ILE VAL ASN GLU PRO THR ALA ALA ALA ILE SEQRES 16 A 394 ALA TYR GLY LEU ASP LYS SER ASP LYS GLU HIS GLN ILE SEQRES 17 A 394 ILE VAL TYR ASP LEU GLY GLY GLY THR PHE ASP VAL SER SEQRES 18 A 394 LEU LEU SER ILE GLU ASN GLY VAL PHE GLU VAL GLN ALA SEQRES 19 A 394 THR SER GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SEQRES 20 A 394 TYR LYS ILE VAL ARG GLN LEU ILE LYS ALA PHE LYS LYS SEQRES 21 A 394 LYS HIS GLY ILE ASP VAL SER ASP ASN ASN LYS ALA LEU SEQRES 22 A 394 ALA LYS LEU LYS ARG GLU ALA GLU LYS ALA LYS ARG ALA SEQRES 23 A 394 LEU SER SER GLN MET SER THR ARG ILE GLU ILE ASP SER SEQRES 24 A 394 PHE VAL ASP GLY ILE ASP LEU SER GLU THR LEU THR ARG SEQRES 25 A 394 ALA LYS PHE GLU GLU LEU ASN LEU ASP LEU PHE LYS LYS SEQRES 26 A 394 THR LEU LYS PRO VAL GLU LYS VAL LEU GLN ASP SER GLY SEQRES 27 A 394 LEU GLU LYS LYS ASP VAL ASP ASP ILE VAL LEU VAL GLY SEQRES 28 A 394 GLY SER THR ARG ILE PRO LYS VAL GLN GLN LEU LEU GLU SEQRES 29 A 394 SER TYR PHE ASP GLY LYS LYS ALA SER LYS GLY ILE ASN SEQRES 30 A 394 PRO ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA SEQRES 31 A 394 GLY VAL LEU SER HET ADP A 501 27 HET PO4 A 502 5 HET MG A 1 1 HET PO4 A 427 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MG MG 2+ FORMUL 6 HOH *329(H2 O) HELIX 1 1 GLY A 98 GLN A 104 1 7 HELIX 2 2 VAL A 105 GLN A 110 5 6 HELIX 3 3 ASP A 115 LEU A 119 5 5 HELIX 4 4 ASP A 126 LYS A 134 1 9 HELIX 5 5 THR A 161 GLY A 182 1 22 HELIX 6 6 ASN A 197 ALA A 211 1 15 HELIX 7 7 GLU A 221 TYR A 229 1 9 HELIX 8 8 GLY A 274 GLY A 295 1 22 HELIX 9 9 ASN A 301 LEU A 319 1 19 HELIX 10 10 ARG A 344 THR A 358 1 15 HELIX 11 11 THR A 358 GLY A 370 1 13 HELIX 12 12 GLU A 372 VAL A 376 5 5 HELIX 13 13 GLY A 383 ARG A 387 5 5 HELIX 14 14 ILE A 388 PHE A 399 1 12 HELIX 15 15 GLU A 412 SER A 426 1 15 SHEET 1 A 3 THR A 72 ILE A 74 0 SHEET 2 A 3 TYR A 61 MET A 67 -1 N VAL A 66 O GLU A 73 SHEET 3 A 3 THR A 84 PRO A 85 -1 O THR A 84 N SER A 62 SHEET 1 B 5 THR A 72 ILE A 74 0 SHEET 2 B 5 TYR A 61 MET A 67 -1 N VAL A 66 O GLU A 73 SHEET 3 B 5 ILE A 53 LEU A 57 -1 N ASP A 56 O CYS A 63 SHEET 4 B 5 HIS A 187 VAL A 192 1 O VAL A 189 N ILE A 53 SHEET 5 B 5 ASN A 214 ASN A 220 1 O VAL A 219 N VAL A 192 SHEET 1 C 3 ARG A 95 ILE A 97 0 SHEET 2 C 3 VAL A 88 PHE A 90 -1 N ALA A 89 O LEU A 96 SHEET 3 C 3 THR A 112 ILE A 113 -1 O ILE A 113 N VAL A 88 SHEET 1 D 3 ASN A 139 LYS A 143 0 SHEET 2 D 3 LYS A 146 SER A 152 -1 O ALA A 148 N VAL A 141 SHEET 3 D 3 LYS A 157 PHE A 160 -1 O LYS A 158 N VAL A 151 SHEET 1 E 4 VAL A 261 ASP A 270 0 SHEET 2 E 4 PHE A 250 GLU A 258 -1 N LEU A 254 O ALA A 266 SHEET 3 E 4 HIS A 238 LEU A 245 -1 N ASP A 244 O ASP A 251 SHEET 4 E 4 ASP A 378 VAL A 382 1 O VAL A 380 N ILE A 241 SHEET 1 F 2 SER A 324 VAL A 333 0 SHEET 2 F 2 ILE A 336 THR A 343 -1 O GLU A 340 N ILE A 327 LINK MG MG A 1 O3B ADP A 501 1555 1555 2.10 LINK MG MG A 1 O1 PO4 A 502 1555 1555 2.06 LINK MG MG A 1 O HOH A 580 1555 1555 2.18 LINK MG MG A 1 O HOH A 581 1555 1555 2.07 LINK MG MG A 1 O HOH A 582 1555 1555 2.19 LINK MG MG A 1 O HOH A 583 1555 1555 2.10 SITE 1 AC1 29 MG A 1 HOH A 2 HOH A 12 HOH A 18 SITE 2 AC1 29 HOH A 21 THR A 59 THR A 60 TYR A 61 SITE 3 AC1 29 GLY A 246 GLY A 247 GLY A 275 GLU A 313 SITE 4 AC1 29 LYS A 316 ARG A 317 SER A 320 GLY A 383 SITE 5 AC1 29 GLY A 384 SER A 385 ARG A 387 ILE A 388 SITE 6 AC1 29 HOH A 448 PO4 A 502 HOH A 514 HOH A 579 SITE 7 AC1 29 HOH A 580 HOH A 581 HOH A 582 HOH A 584 SITE 8 AC1 29 HOH A 588 SITE 1 AC2 14 MG A 1 HOH A 12 HOH A 15 HOH A 38 SITE 2 AC2 14 GLY A 58 THR A 59 LYS A 117 PRO A 193 SITE 3 AC2 14 GLU A 221 THR A 249 ADP A 501 HOH A 580 SITE 4 AC2 14 HOH A 581 HOH A 583 SITE 1 AC3 6 ADP A 501 PO4 A 502 HOH A 580 HOH A 581 SITE 2 AC3 6 HOH A 582 HOH A 583 SITE 1 AC4 8 HOH A 38 THR A 59 LYS A 117 ARG A 118 SITE 2 AC4 8 TYR A 195 PHE A 196 THR A 249 HOH A 562 CRYST1 63.367 85.667 94.921 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010535 0.00000