HEADER TRANSFERASE 26-JAN-11 3QHQ TITLE STRUCTURE OF CRISPR-ASSOCIATED PROTEIN CSN2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAG0897 FAMILY CRISPR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CSN2; COMPND 5 EC: 2.7.7.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 888745; SOURCE 4 STRAIN: ATCC 13813; SOURCE 5 GENE: HMPREF9171_1216; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET 28 KEYWDS HELICASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ELLINGER,Z.ARSLAN,R.WURM,B.TSCHAPEK,K.PFEFFER,R.WAGNER,L.SCHMITT, AUTHOR 2 U.PUL,S.H.SMITS REVDAT 2 20-MAR-24 3QHQ 1 REMARK SEQADV LINK REVDAT 1 01-FEB-12 3QHQ 0 JRNL AUTH P.ELLINGER,Z.ARSLAN,R.WURM,B.TSCHAPEK,K.PFEFFER,R.WAGNER, JRNL AUTH 2 L.SCHMITT,U.PUL,S.H.SMITS JRNL TITL STRUCTURE OF CRISPR-ASSOCIATED PROTEIN CSN2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2174 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2940 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3489 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3655 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4970 ; 1.026 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 4.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;38.101 ;26.438 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;12.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 7.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2672 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2237 ; 0.361 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3665 ; 0.671 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 0.994 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1305 ; 1.676 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 72 REMARK 3 RESIDUE RANGE : A 138 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5870 43.2190 33.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.1364 REMARK 3 T33: 0.1162 T12: -0.0880 REMARK 3 T13: -0.0230 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.5890 L22: 2.1844 REMARK 3 L33: 3.3879 L12: 0.5011 REMARK 3 L13: -0.3608 L23: -0.7663 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: -0.0656 S13: 0.0272 REMARK 3 S21: -0.0361 S22: 0.1056 S23: 0.1733 REMARK 3 S31: 0.0386 S32: 0.0451 S33: -0.1704 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9230 44.4340 -6.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.3087 REMARK 3 T33: 0.1002 T12: 0.1075 REMARK 3 T13: -0.0314 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.1511 L22: 0.9677 REMARK 3 L33: 3.7937 L12: 0.3151 REMARK 3 L13: -1.6466 L23: -0.5366 REMARK 3 S TENSOR REMARK 3 S11: 0.2302 S12: 0.2905 S13: -0.0207 REMARK 3 S21: -0.0385 S22: -0.1315 S23: -0.0650 REMARK 3 S31: 0.0769 S32: -0.3097 S33: -0.0987 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 72 REMARK 3 RESIDUE RANGE : B 138 B 215 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2930 64.6290 31.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.4451 T22: 0.2243 REMARK 3 T33: 0.3772 T12: -0.2506 REMARK 3 T13: 0.1381 T23: -0.1351 REMARK 3 L TENSOR REMARK 3 L11: 3.5880 L22: 2.6070 REMARK 3 L33: 2.5810 L12: 0.5120 REMARK 3 L13: -1.1567 L23: -0.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.4486 S12: -0.2408 S13: 0.9480 REMARK 3 S21: 0.1149 S22: -0.0549 S23: 0.2372 REMARK 3 S31: -0.8356 S32: 0.3774 S33: -0.3937 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 63.6490 53.4150 6.0200 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.2965 REMARK 3 T33: 0.1321 T12: -0.1420 REMARK 3 T13: 0.0478 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 2.3527 L22: 1.0548 REMARK 3 L33: 3.1359 L12: -0.2004 REMARK 3 L13: -1.3628 L23: 0.5445 REMARK 3 S TENSOR REMARK 3 S11: 0.4821 S12: -0.2871 S13: 0.3242 REMARK 3 S21: 0.0770 S22: -0.1682 S23: -0.0245 REMARK 3 S31: -0.4252 S32: 0.3706 S33: -0.3140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979981 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43206 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.530 REMARK 200 R MERGE (I) : 0.02600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 12% PEG 6000, 0.05M REMARK 280 PHENOLE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.65000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.65000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS B 44 REMARK 465 LEU B 45 REMARK 465 LYS B 46 REMARK 465 LEU B 47 REMARK 465 PHE B 48 REMARK 465 GLY B 217 REMARK 465 GLU B 218 REMARK 465 ASN B 219 REMARK 465 MET B 220 REMARK 465 VAL B 221 REMARK 465 LEU B 222 REMARK 465 GLU B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 ASP B 42 CG OD1 OD2 REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 ASP B 49 CG OD1 OD2 REMARK 470 PHE B 214 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -130.06 49.13 REMARK 500 ASP A 42 -90.81 -70.45 REMARK 500 GLU A 43 90.79 42.72 REMARK 500 HIS A 44 -82.55 26.63 REMARK 500 ASP A 49 104.45 72.17 REMARK 500 ASP A 50 90.17 22.40 REMARK 500 LYS A 51 88.73 -27.37 REMARK 500 GLN A 52 -9.15 83.12 REMARK 500 ASP A 123 -101.94 -104.90 REMARK 500 GLN A 190 -29.46 76.93 REMARK 500 TYR A 202 -140.87 50.49 REMARK 500 GLU A 218 -109.71 -45.57 REMARK 500 VAL B 2 125.49 40.71 REMARK 500 ASN B 17 -125.03 51.27 REMARK 500 ASN B 17 -125.03 49.95 REMARK 500 VAL B 41 -54.26 -130.48 REMARK 500 ASP B 50 90.95 39.25 REMARK 500 LYS B 51 83.24 -29.16 REMARK 500 GLN B 52 11.63 55.93 REMARK 500 THR B 64 -52.09 -120.69 REMARK 500 ASP B 123 -98.10 -106.43 REMARK 500 TYR B 202 -145.96 49.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 230 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 113 O REMARK 620 2 ASN A 116 O 91.2 REMARK 620 3 LEU A 118 O 114.1 89.4 REMARK 620 4 HOH A 357 O 89.5 178.0 92.1 REMARK 620 5 HOH A 379 O 129.5 92.0 116.4 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 231 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 123 OD1 REMARK 620 2 GLU A 124 O 77.3 REMARK 620 3 GLU A 129 OE2 149.9 130.4 REMARK 620 4 GLU A 129 OE1 156.2 79.1 52.1 REMARK 620 5 HOH A 253 O 72.7 147.4 81.8 131.0 REMARK 620 6 HOH A 356 O 81.8 89.5 86.5 94.6 98.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 232 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 113 O REMARK 620 2 LEU B 114 O 79.4 REMARK 620 3 ASN B 116 O 98.9 74.8 REMARK 620 4 LEU B 118 O 111.0 164.0 91.3 REMARK 620 5 HOH B 327 O 83.6 106.3 177.5 87.3 REMARK 620 6 HOH B 334 O 153.9 78.0 87.6 94.0 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 231 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 123 OD1 REMARK 620 2 GLU B 124 O 77.7 REMARK 620 3 GLU B 129 OE2 151.2 128.6 REMARK 620 4 GLU B 129 OE1 156.1 78.4 51.4 REMARK 620 5 HOH B 297 O 84.2 89.4 84.5 94.4 REMARK 620 6 HOH B 340 O 73.0 149.4 82.0 130.7 96.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 230 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 139 OE1 REMARK 620 2 GLU B 139 O 71.2 REMARK 620 3 ASP B 143 OD1 89.2 87.2 REMARK 620 4 GLU B 151 OE2 145.1 74.2 84.0 REMARK 620 5 HOH B 336 O 75.6 144.7 80.5 136.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 234 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE CONFLICTS I2V, V133A AND N157H WERE CONSIDERED TO BE REMARK 999 NATURALLY OCCURRING POLYMORPHISM. DBREF 3QHQ A 1 221 UNP E7S4M0 E7S4M0_STRAG 1 221 DBREF 3QHQ B 1 221 UNP E7S4M0 E7S4M0_STRAG 1 221 SEQADV 3QHQ VAL A 2 UNP E7S4M0 ILE 2 SEE REMARK 999 SEQADV 3QHQ ALA A 133 UNP E7S4M0 VAL 133 SEE REMARK 999 SEQADV 3QHQ HIS A 157 UNP E7S4M0 ASN 157 SEE REMARK 999 SEQADV 3QHQ LEU A 222 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ GLU A 223 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS A 224 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS A 225 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS A 226 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS A 227 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS A 228 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS A 229 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ VAL B 2 UNP E7S4M0 ILE 2 SEE REMARK 999 SEQADV 3QHQ ALA B 133 UNP E7S4M0 VAL 133 SEE REMARK 999 SEQADV 3QHQ HIS B 157 UNP E7S4M0 ASN 157 SEE REMARK 999 SEQADV 3QHQ LEU B 222 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ GLU B 223 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS B 224 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS B 225 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS B 226 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS B 227 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS B 228 UNP E7S4M0 EXPRESSION TAG SEQADV 3QHQ HIS B 229 UNP E7S4M0 EXPRESSION TAG SEQRES 1 A 229 MET VAL LYS ILE ASN PHE PRO ILE LEU ASP GLU PRO LEU SEQRES 2 A 229 VAL LEU SER ASN ALA THR ILE LEU THR ILE GLU ASP VAL SEQRES 3 A 229 SER VAL TYR SER SER LEU VAL LYS HIS PHE TYR GLN TYR SEQRES 4 A 229 ASP VAL ASP GLU HIS LEU LYS LEU PHE ASP ASP LYS GLN SEQRES 5 A 229 LYS SER LEU LYS ALA THR GLU LEU MET LEU VAL THR ASP SEQRES 6 A 229 ILE LEU GLY TYR ASP VAL ASN SER ALA PRO ILE LEU LYS SEQRES 7 A 229 LEU ILE HIS GLY ASP LEU GLU ASN GLN PHE ASN GLU LYS SEQRES 8 A 229 PRO GLU VAL LYS SER MET VAL GLU LYS LEU ALA ALA THR SEQRES 9 A 229 ILE THR GLU LEU ILE ALA PHE GLU CYS LEU GLU ASN GLU SEQRES 10 A 229 LEU ASP LEU GLU TYR ASP GLU ILE THR ILE LEU GLU LEU SEQRES 11 A 229 ILE LYS ALA LEU GLY VAL LYS ILE GLU THR GLN SER ASP SEQRES 12 A 229 THR ILE PHE GLU LYS CYS PHE GLU ILE ILE GLN VAL TYR SEQRES 13 A 229 HIS TYR LEU THR LYS LYS ASN LEU LEU VAL PHE VAL ASN SEQRES 14 A 229 SER GLY ALA TYR LEU THR LYS ASP GLU VAL ILE LYS LEU SEQRES 15 A 229 CYS GLU TYR ILE ASN LEU MET GLN LYS SER VAL LEU PHE SEQRES 16 A 229 LEU GLU PRO ARG ARG LEU TYR ASP LEU PRO GLN TYR VAL SEQRES 17 A 229 ILE ASP LYS ASP TYR PHE LEU ILE GLY GLU ASN MET VAL SEQRES 18 A 229 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 229 MET VAL LYS ILE ASN PHE PRO ILE LEU ASP GLU PRO LEU SEQRES 2 B 229 VAL LEU SER ASN ALA THR ILE LEU THR ILE GLU ASP VAL SEQRES 3 B 229 SER VAL TYR SER SER LEU VAL LYS HIS PHE TYR GLN TYR SEQRES 4 B 229 ASP VAL ASP GLU HIS LEU LYS LEU PHE ASP ASP LYS GLN SEQRES 5 B 229 LYS SER LEU LYS ALA THR GLU LEU MET LEU VAL THR ASP SEQRES 6 B 229 ILE LEU GLY TYR ASP VAL ASN SER ALA PRO ILE LEU LYS SEQRES 7 B 229 LEU ILE HIS GLY ASP LEU GLU ASN GLN PHE ASN GLU LYS SEQRES 8 B 229 PRO GLU VAL LYS SER MET VAL GLU LYS LEU ALA ALA THR SEQRES 9 B 229 ILE THR GLU LEU ILE ALA PHE GLU CYS LEU GLU ASN GLU SEQRES 10 B 229 LEU ASP LEU GLU TYR ASP GLU ILE THR ILE LEU GLU LEU SEQRES 11 B 229 ILE LYS ALA LEU GLY VAL LYS ILE GLU THR GLN SER ASP SEQRES 12 B 229 THR ILE PHE GLU LYS CYS PHE GLU ILE ILE GLN VAL TYR SEQRES 13 B 229 HIS TYR LEU THR LYS LYS ASN LEU LEU VAL PHE VAL ASN SEQRES 14 B 229 SER GLY ALA TYR LEU THR LYS ASP GLU VAL ILE LYS LEU SEQRES 15 B 229 CYS GLU TYR ILE ASN LEU MET GLN LYS SER VAL LEU PHE SEQRES 16 B 229 LEU GLU PRO ARG ARG LEU TYR ASP LEU PRO GLN TYR VAL SEQRES 17 B 229 ILE ASP LYS ASP TYR PHE LEU ILE GLY GLU ASN MET VAL SEQRES 18 B 229 LEU GLU HIS HIS HIS HIS HIS HIS HET CA A 230 1 HET CA A 231 1 HET EDO A 232 4 HET CA B 230 1 HET CA B 231 1 HET CA B 232 1 HET EDO B 233 4 HET EDO B 234 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 5(CA 2+) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 11 HOH *296(H2 O) HELIX 1 1 ASP A 25 TYR A 39 1 15 HELIX 2 2 LYS A 56 THR A 58 5 3 HELIX 3 3 SER A 73 GLU A 90 1 18 HELIX 4 4 LYS A 91 ASN A 116 1 26 HELIX 5 5 THR A 126 GLY A 135 1 10 HELIX 6 6 THR A 144 LEU A 159 1 16 HELIX 7 7 SER A 170 LEU A 174 5 5 HELIX 8 8 THR A 175 GLN A 190 1 16 HELIX 9 9 ASP B 25 TYR B 39 1 15 HELIX 10 10 LYS B 56 THR B 58 5 3 HELIX 11 11 SER B 73 GLU B 90 1 18 HELIX 12 12 LYS B 91 ASN B 116 1 26 HELIX 13 13 THR B 126 GLY B 135 1 10 HELIX 14 14 THR B 144 LEU B 159 1 16 HELIX 15 15 SER B 170 LEU B 174 5 5 HELIX 16 16 THR B 175 GLN B 190 1 16 SHEET 1 A 3 LEU A 13 LEU A 15 0 SHEET 2 A 3 VAL A 2 ASN A 5 -1 N VAL A 2 O LEU A 15 SHEET 3 A 3 LYS A 46 PHE A 48 -1 O LYS A 46 N ASN A 5 SHEET 1 B 6 LEU A 60 VAL A 63 0 SHEET 2 B 6 LEU A 164 VAL A 168 1 O VAL A 166 N VAL A 63 SHEET 3 B 6 VAL A 193 GLU A 197 1 O LEU A 194 N LEU A 165 SHEET 4 B 6 ALA A 18 ILE A 23 1 N ILE A 23 O GLU A 197 SHEET 5 B 6 TYR A 207 ILE A 209 1 O TYR A 207 N THR A 22 SHEET 6 B 6 LEU A 215 GLY A 217 -1 O ILE A 216 N VAL A 208 SHEET 1 C 2 LYS B 3 ILE B 4 0 SHEET 2 C 2 LEU B 13 VAL B 14 -1 O LEU B 13 N ILE B 4 SHEET 1 D 6 LEU B 60 VAL B 63 0 SHEET 2 D 6 LEU B 164 VAL B 168 1 O VAL B 166 N MET B 61 SHEET 3 D 6 VAL B 193 GLU B 197 1 O LEU B 194 N LEU B 165 SHEET 4 D 6 ALA B 18 ILE B 23 1 N LEU B 21 O GLU B 197 SHEET 5 D 6 TYR B 207 ILE B 209 1 O TYR B 207 N THR B 22 SHEET 6 D 6 LEU B 215 ILE B 216 -1 O ILE B 216 N VAL B 208 LINK O CYS A 113 CA CA A 230 1555 1555 2.37 LINK O ASN A 116 CA CA A 230 1555 1555 2.42 LINK O LEU A 118 CA CA A 230 1555 1555 2.34 LINK OD1 ASP A 123 CA CA A 231 1555 1555 2.42 LINK O GLU A 124 CA CA A 231 1555 1555 2.33 LINK OE2 GLU A 129 CA CA A 231 1555 1555 2.47 LINK OE1 GLU A 129 CA CA A 231 1555 1555 2.54 LINK CA CA A 230 O HOH A 357 1555 1555 2.37 LINK CA CA A 230 O HOH A 379 1555 1555 2.74 LINK CA CA A 231 O HOH A 253 1555 1555 2.50 LINK CA CA A 231 O HOH A 356 1555 1555 2.38 LINK O CYS B 113 CA CA B 232 1555 1555 2.47 LINK O LEU B 114 CA CA B 232 1555 1555 3.13 LINK O ASN B 116 CA CA B 232 1555 1555 2.30 LINK O LEU B 118 CA CA B 232 1555 1555 2.28 LINK OD1 ASP B 123 CA CA B 231 1555 1555 2.40 LINK O GLU B 124 CA CA B 231 1555 1555 2.25 LINK OE2 GLU B 129 CA CA B 231 1555 1555 2.44 LINK OE1 GLU B 129 CA CA B 231 1555 1555 2.59 LINK OE1 GLU B 139 CA CA B 230 1555 1555 2.46 LINK O GLU B 139 CA CA B 230 1555 1555 2.48 LINK OD1 ASP B 143 CA CA B 230 1555 1555 2.33 LINK OE2 GLU B 151 CA CA B 230 1555 1555 2.38 LINK CA CA B 230 O HOH B 336 1555 1555 2.49 LINK CA CA B 231 O HOH B 297 1555 1555 2.29 LINK CA CA B 231 O HOH B 340 1555 1555 2.37 LINK CA CA B 232 O HOH B 327 1555 1555 2.27 LINK CA CA B 232 O HOH B 334 1555 1555 2.41 CISPEP 1 TYR A 39 ASP A 40 0 8.11 CISPEP 2 TYR A 39 ASP A 40 0 6.09 CISPEP 3 GLU A 43 HIS A 44 0 7.37 CISPEP 4 ASP A 49 ASP A 50 0 -5.38 CISPEP 5 TYR B 39 ASP B 40 0 -0.63 SITE 1 AC1 6 CYS A 113 LEU A 114 ASN A 116 LEU A 118 SITE 2 AC1 6 HOH A 357 HOH A 379 SITE 1 AC2 6 ASP A 123 GLU A 124 GLU A 129 HOH A 253 SITE 2 AC2 6 HOH A 356 ALA B 133 SITE 1 AC3 5 THR A 64 ASP A 65 ILE A 66 LEU A 67 SITE 2 AC3 5 TYR A 173 SITE 1 AC4 6 ASP A 119 HOH A 274 GLU B 139 ASP B 143 SITE 2 AC4 6 GLU B 151 HOH B 336 SITE 1 AC5 6 ALA A 133 ASP B 123 GLU B 124 GLU B 129 SITE 2 AC5 6 HOH B 297 HOH B 340 SITE 1 AC6 6 CYS B 113 LEU B 114 ASN B 116 LEU B 118 SITE 2 AC6 6 HOH B 327 HOH B 334 SITE 1 AC7 5 LYS B 100 THR B 104 TYR B 122 HOH B 250 SITE 2 AC7 5 HOH B 277 SITE 1 AC8 7 THR A 64 THR B 64 ASP B 65 ILE B 66 SITE 2 AC8 7 LEU B 67 TYR B 173 HOH B 280 CRYST1 75.300 83.300 110.400 90.00 109.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013280 0.000000 0.004677 0.00000 SCALE2 0.000000 0.012005 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009603 0.00000