HEADER STRUCTURAL PROTEIN 31-JAN-11 3QK3 TITLE CRYSTAL STRUCTURE OF HUMAN BETA-CRYSTALLIN B3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-CRYSTALLIN B3; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: BETA-B3 CRYSTALLIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CRYBB3, CRYB3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRYBB3, CRYSTALLIN, BETA B3, CATARACT, EYE LENS PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,C.GILEADI,R.COCKING,J.MUNIZ,E.PILKA,W.W.YUE,M.VOLLMAR, AUTHOR 2 A.C.W.PIKE,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS, AUTHOR 3 K.KAVANAGH,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 13-SEP-23 3QK3 1 REMARK SEQADV REVDAT 1 23-FEB-11 3QK3 0 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2852 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2190 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2718 REMARK 3 BIN R VALUE (WORKING SET) : 0.2183 REMARK 3 BIN FREE R VALUE : 0.2311 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 134 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04860 REMARK 3 B22 (A**2) : 0.72590 REMARK 3 B33 (A**2) : -1.77450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.21270 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.231 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4517 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 6126 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 2044 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 116 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 665 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 4517 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 522 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5413 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.83 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 23:107) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9496 1.7641 42.1337 REMARK 3 T TENSOR REMARK 3 T11: -0.0386 T22: -0.0617 REMARK 3 T33: -0.0259 T12: 0.0025 REMARK 3 T13: -0.0153 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.1766 L22: 1.8703 REMARK 3 L33: 1.0610 L12: 1.0615 REMARK 3 L13: -0.4042 L23: 0.5756 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.2245 S13: -0.1078 REMARK 3 S21: 0.2526 S22: -0.0191 S23: -0.0731 REMARK 3 S31: 0.0401 S32: 0.0977 S33: -0.0177 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 108:114) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0513 16.6133 25.7519 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: -0.0385 REMARK 3 T33: 0.1538 T12: 0.0461 REMARK 3 T13: 0.1156 T23: 0.0756 REMARK 3 L TENSOR REMARK 3 L11: 0.4728 L22: 1.3006 REMARK 3 L33: -0.2495 L12: -0.2674 REMARK 3 L13: -1.1359 L23: 0.9519 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.0575 S13: 0.0177 REMARK 3 S21: 0.0524 S22: 0.0087 S23: 0.0241 REMARK 3 S31: -0.0161 S32: -0.0319 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 115:198) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4834 13.1823 25.1288 REMARK 3 T TENSOR REMARK 3 T11: -0.0224 T22: -0.0683 REMARK 3 T33: -0.0078 T12: -0.0187 REMARK 3 T13: 0.0390 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.7862 L22: 2.0492 REMARK 3 L33: 1.4231 L12: 0.6385 REMARK 3 L13: -0.1001 L23: 0.3773 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: 0.0521 S13: 0.0697 REMARK 3 S21: 0.0386 S22: 0.0374 S23: -0.0286 REMARK 3 S31: -0.1104 S32: 0.0818 S33: -0.1281 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 23:107) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5048 30.6763 43.1529 REMARK 3 T TENSOR REMARK 3 T11: -0.0541 T22: -0.0593 REMARK 3 T33: -0.0473 T12: -0.0087 REMARK 3 T13: -0.0291 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.2448 L22: 2.3134 REMARK 3 L33: 2.4480 L12: -0.0853 REMARK 3 L13: -0.5824 L23: -0.5754 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.1574 S13: -0.0694 REMARK 3 S21: -0.0866 S22: 0.0437 S23: 0.0389 REMARK 3 S31: 0.2111 S32: -0.2043 S33: -0.0570 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 108:114) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2050 40.7426 56.4574 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.1434 REMARK 3 T33: -0.0051 T12: 0.0296 REMARK 3 T13: 0.0056 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 0.1947 L22: 0.0000 REMARK 3 L33: 1.5457 L12: 0.0964 REMARK 3 L13: 0.5922 L23: -1.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.0371 S13: 0.0018 REMARK 3 S21: -0.0039 S22: 0.0277 S23: 0.0293 REMARK 3 S31: 0.0405 S32: -0.0497 S33: -0.0410 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 115:198) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5532 33.6235 43.3751 REMARK 3 T TENSOR REMARK 3 T11: -0.0277 T22: -0.0284 REMARK 3 T33: -0.0254 T12: 0.0057 REMARK 3 T13: 0.0016 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.7071 L22: 1.2437 REMARK 3 L33: 1.6145 L12: 0.5104 REMARK 3 L13: -0.3262 L23: -0.1324 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.1859 S13: -0.0689 REMARK 3 S21: 0.0060 S22: -0.0052 S23: -0.1064 REMARK 3 S31: -0.0394 S32: 0.0524 S33: -0.0575 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN C AND RESID 23:107) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4488 15.9600 63.9223 REMARK 3 T TENSOR REMARK 3 T11: -0.0385 T22: -0.0855 REMARK 3 T33: -0.0937 T12: 0.0444 REMARK 3 T13: 0.0072 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 5.3769 L22: 1.8609 REMARK 3 L33: 3.5533 L12: 0.4496 REMARK 3 L13: 1.1277 L23: -0.0871 REMARK 3 S TENSOR REMARK 3 S11: -0.1076 S12: -0.2224 S13: 0.4775 REMARK 3 S21: 0.1210 S22: 0.0612 S23: 0.3008 REMARK 3 S31: -0.4337 S32: -0.1113 S33: 0.0464 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN C AND RESID 108:114) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0344 -5.3775 57.9329 REMARK 3 T TENSOR REMARK 3 T11: 0.0009 T22: -0.0429 REMARK 3 T33: 0.1943 T12: -0.0470 REMARK 3 T13: -0.0696 T23: -0.1508 REMARK 3 L TENSOR REMARK 3 L11: 0.4656 L22: 0.7626 REMARK 3 L33: -0.0263 L12: 1.4450 REMARK 3 L13: -0.0623 L23: 1.8262 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0411 S13: -0.0185 REMARK 3 S21: -0.0125 S22: 0.0008 S23: -0.0004 REMARK 3 S31: -0.0153 S32: -0.0442 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 115:198) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7352 3.2676 49.1820 REMARK 3 T TENSOR REMARK 3 T11: -0.1381 T22: 0.1284 REMARK 3 T33: -0.1128 T12: 0.0126 REMARK 3 T13: -0.0034 T23: -0.0784 REMARK 3 L TENSOR REMARK 3 L11: 3.5550 L22: 1.2206 REMARK 3 L33: 1.7747 L12: -0.8081 REMARK 3 L13: 0.5393 L23: -0.2643 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.5501 S13: -0.4031 REMARK 3 S21: -0.0777 S22: -0.1681 S23: 0.1369 REMARK 3 S31: 0.0767 S32: -0.0043 S33: 0.0889 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 19.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OKI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.5M LI2SO4, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.38900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.31350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.38900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.31350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 SER A 19 REMARK 465 MET A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 ASP A 50 REMARK 465 SER A 51 REMARK 465 TYR B 16 REMARK 465 PHE B 17 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 MET B 20 REMARK 465 GLY B 21 REMARK 465 GLY B 22 REMARK 465 ASP B 199 REMARK 465 TYR C 16 REMARK 465 PHE C 17 REMARK 465 GLN C 18 REMARK 465 SER C 19 REMARK 465 MET C 20 REMARK 465 GLY C 21 REMARK 465 GLY C 22 REMARK 465 ASP C 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CD CE NZ REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 108 CG OD1 ND2 REMARK 470 ASP B 110 CG OD1 OD2 REMARK 470 ARG B 175 NE CZ NH1 NH2 REMARK 470 ARG B 179 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 54 CG CD OE1 OE2 REMARK 470 ARG C 96 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 97 CG OD1 OD2 REMARK 470 ASP C 110 CG OD1 OD2 REMARK 470 HIS C 113 CG ND1 CD2 CE1 NE2 REMARK 470 GLN C 188 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 183 O HOH A 307 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 53 132.65 -171.32 REMARK 500 SER A 98 149.65 -171.18 REMARK 500 GLN A 145 -110.86 -96.89 REMARK 500 PRO A 189 29.55 -78.59 REMARK 500 SER B 47 117.17 -161.53 REMARK 500 LEU B 52 -65.77 -124.07 REMARK 500 ARG B 96 34.87 -71.21 REMARK 500 ASP B 110 84.08 -68.08 REMARK 500 GLN B 145 -161.70 -102.84 REMARK 500 ASP B 146 41.46 -87.99 REMARK 500 PRO B 189 24.58 -79.50 REMARK 500 SER C 51 -27.53 -161.94 REMARK 500 LEU C 52 -74.37 -73.16 REMARK 500 GLN C 145 -128.22 -106.23 REMARK 500 PRO C 189 29.61 -79.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 DBREF 3QK3 A 21 199 UNP P26998 CRBB3_HUMAN 21 199 DBREF 3QK3 B 21 199 UNP P26998 CRBB3_HUMAN 21 199 DBREF 3QK3 C 21 199 UNP P26998 CRBB3_HUMAN 21 199 SEQADV 3QK3 TYR A 16 UNP P26998 EXPRESSION TAG SEQADV 3QK3 PHE A 17 UNP P26998 EXPRESSION TAG SEQADV 3QK3 GLN A 18 UNP P26998 EXPRESSION TAG SEQADV 3QK3 SER A 19 UNP P26998 EXPRESSION TAG SEQADV 3QK3 MET A 20 UNP P26998 EXPRESSION TAG SEQADV 3QK3 TYR B 16 UNP P26998 EXPRESSION TAG SEQADV 3QK3 PHE B 17 UNP P26998 EXPRESSION TAG SEQADV 3QK3 GLN B 18 UNP P26998 EXPRESSION TAG SEQADV 3QK3 SER B 19 UNP P26998 EXPRESSION TAG SEQADV 3QK3 MET B 20 UNP P26998 EXPRESSION TAG SEQADV 3QK3 TYR C 16 UNP P26998 EXPRESSION TAG SEQADV 3QK3 PHE C 17 UNP P26998 EXPRESSION TAG SEQADV 3QK3 GLN C 18 UNP P26998 EXPRESSION TAG SEQADV 3QK3 SER C 19 UNP P26998 EXPRESSION TAG SEQADV 3QK3 MET C 20 UNP P26998 EXPRESSION TAG SEQRES 1 A 184 TYR PHE GLN SER MET GLY GLY SER TYR LYS VAL ILE LEU SEQRES 2 A 184 TYR GLU LEU GLU ASN PHE GLN GLY LYS ARG CYS GLU LEU SEQRES 3 A 184 SER ALA GLU CYS PRO SER LEU THR ASP SER LEU LEU GLU SEQRES 4 A 184 LYS VAL GLY SER ILE GLN VAL GLU SER GLY PRO TRP LEU SEQRES 5 A 184 ALA PHE GLU SER ARG ALA PHE ARG GLY GLU GLN PHE VAL SEQRES 6 A 184 LEU GLU LYS GLY ASP TYR PRO ARG TRP ASP ALA TRP SER SEQRES 7 A 184 ASN SER ARG ASP SER ASP SER LEU LEU SER LEU ARG PRO SEQRES 8 A 184 LEU ASN ILE ASP SER PRO HIS HIS LYS LEU HIS LEU PHE SEQRES 9 A 184 GLU ASN PRO ALA PHE SER GLY ARG LYS MET GLU ILE VAL SEQRES 10 A 184 ASP ASP ASP VAL PRO SER LEU TRP ALA HIS GLY PHE GLN SEQRES 11 A 184 ASP ARG VAL ALA SER VAL ARG ALA ILE ASN GLY THR TRP SEQRES 12 A 184 VAL GLY TYR GLU PHE PRO GLY TYR ARG GLY ARG GLN TYR SEQRES 13 A 184 VAL PHE GLU ARG GLY GLU TYR ARG HIS TRP ASN GLU TRP SEQRES 14 A 184 ASP ALA SER GLN PRO GLN LEU GLN SER VAL ARG ARG ILE SEQRES 15 A 184 ARG ASP SEQRES 1 B 184 TYR PHE GLN SER MET GLY GLY SER TYR LYS VAL ILE LEU SEQRES 2 B 184 TYR GLU LEU GLU ASN PHE GLN GLY LYS ARG CYS GLU LEU SEQRES 3 B 184 SER ALA GLU CYS PRO SER LEU THR ASP SER LEU LEU GLU SEQRES 4 B 184 LYS VAL GLY SER ILE GLN VAL GLU SER GLY PRO TRP LEU SEQRES 5 B 184 ALA PHE GLU SER ARG ALA PHE ARG GLY GLU GLN PHE VAL SEQRES 6 B 184 LEU GLU LYS GLY ASP TYR PRO ARG TRP ASP ALA TRP SER SEQRES 7 B 184 ASN SER ARG ASP SER ASP SER LEU LEU SER LEU ARG PRO SEQRES 8 B 184 LEU ASN ILE ASP SER PRO HIS HIS LYS LEU HIS LEU PHE SEQRES 9 B 184 GLU ASN PRO ALA PHE SER GLY ARG LYS MET GLU ILE VAL SEQRES 10 B 184 ASP ASP ASP VAL PRO SER LEU TRP ALA HIS GLY PHE GLN SEQRES 11 B 184 ASP ARG VAL ALA SER VAL ARG ALA ILE ASN GLY THR TRP SEQRES 12 B 184 VAL GLY TYR GLU PHE PRO GLY TYR ARG GLY ARG GLN TYR SEQRES 13 B 184 VAL PHE GLU ARG GLY GLU TYR ARG HIS TRP ASN GLU TRP SEQRES 14 B 184 ASP ALA SER GLN PRO GLN LEU GLN SER VAL ARG ARG ILE SEQRES 15 B 184 ARG ASP SEQRES 1 C 184 TYR PHE GLN SER MET GLY GLY SER TYR LYS VAL ILE LEU SEQRES 2 C 184 TYR GLU LEU GLU ASN PHE GLN GLY LYS ARG CYS GLU LEU SEQRES 3 C 184 SER ALA GLU CYS PRO SER LEU THR ASP SER LEU LEU GLU SEQRES 4 C 184 LYS VAL GLY SER ILE GLN VAL GLU SER GLY PRO TRP LEU SEQRES 5 C 184 ALA PHE GLU SER ARG ALA PHE ARG GLY GLU GLN PHE VAL SEQRES 6 C 184 LEU GLU LYS GLY ASP TYR PRO ARG TRP ASP ALA TRP SER SEQRES 7 C 184 ASN SER ARG ASP SER ASP SER LEU LEU SER LEU ARG PRO SEQRES 8 C 184 LEU ASN ILE ASP SER PRO HIS HIS LYS LEU HIS LEU PHE SEQRES 9 C 184 GLU ASN PRO ALA PHE SER GLY ARG LYS MET GLU ILE VAL SEQRES 10 C 184 ASP ASP ASP VAL PRO SER LEU TRP ALA HIS GLY PHE GLN SEQRES 11 C 184 ASP ARG VAL ALA SER VAL ARG ALA ILE ASN GLY THR TRP SEQRES 12 C 184 VAL GLY TYR GLU PHE PRO GLY TYR ARG GLY ARG GLN TYR SEQRES 13 C 184 VAL PHE GLU ARG GLY GLU TYR ARG HIS TRP ASN GLU TRP SEQRES 14 C 184 ASP ALA SER GLN PRO GLN LEU GLN SER VAL ARG ARG ILE SEQRES 15 C 184 ARG ASP HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HET EDO A 200 4 HET EDO B 1 4 HET EDO B 200 4 HET EDO B 201 4 HET SO4 B 2 5 HET EDO B 202 4 HET SO4 B 203 5 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 5(O4 S 2-) FORMUL 7 EDO 5(C2 H6 O2) FORMUL 14 HOH *315(H2 O) HELIX 1 1 LEU A 31 GLN A 35 5 5 HELIX 2 2 SER A 71 ARG A 75 5 5 HELIX 3 3 ARG A 88 SER A 93 1 6 HELIX 4 4 SER A 138 GLY A 143 5 6 HELIX 5 5 HIS A 180 ASP A 185 5 6 HELIX 6 6 LEU B 31 GLN B 35 5 5 HELIX 7 7 ARG B 88 SER B 93 1 6 HELIX 8 8 SER B 138 GLY B 143 5 6 HELIX 9 9 HIS B 180 ASP B 185 5 6 HELIX 10 10 LEU C 31 GLN C 35 5 5 HELIX 11 11 SER C 47 SER C 51 5 5 HELIX 12 12 ARG C 88 SER C 93 1 6 HELIX 13 13 SER C 138 GLY C 143 5 6 HELIX 14 14 HIS C 180 ASP C 185 5 6 SHEET 1 A 4 ARG A 38 LEU A 41 0 SHEET 2 A 4 LYS A 25 TYR A 29 -1 N LEU A 28 O CYS A 39 SHEET 3 A 4 SER A 58 SER A 63 -1 O GLN A 60 N ILE A 27 SHEET 4 A 4 GLY A 84 TYR A 86 -1 O GLY A 84 N VAL A 61 SHEET 1 B 3 GLN A 78 LEU A 81 0 SHEET 2 B 3 TRP A 66 PHE A 69 -1 N TRP A 66 O LEU A 81 SHEET 3 B 3 SER A 103 PRO A 106 -1 O ARG A 105 N LEU A 67 SHEET 1 C 4 SER A 125 VAL A 132 0 SHEET 2 C 4 LYS A 115 ASN A 121 -1 N LEU A 116 O ILE A 131 SHEET 3 C 4 SER A 150 ASN A 155 -1 O ARG A 152 N HIS A 117 SHEET 4 C 4 GLY A 176 TYR A 178 -1 O TYR A 178 N VAL A 151 SHEET 1 D 3 ARG A 167 PHE A 173 0 SHEET 2 D 3 TRP A 158 PHE A 163 -1 N GLY A 160 O TYR A 171 SHEET 3 D 3 SER A 193 ARG A 196 -1 O SER A 193 N TYR A 161 SHEET 1 E 4 ARG B 38 LEU B 41 0 SHEET 2 E 4 LYS B 25 TYR B 29 -1 N LEU B 28 O CYS B 39 SHEET 3 E 4 SER B 58 SER B 63 -1 O GLN B 60 N ILE B 27 SHEET 4 E 4 GLY B 84 TYR B 86 -1 O GLY B 84 N VAL B 61 SHEET 1 F 3 ARG B 75 LEU B 81 0 SHEET 2 F 3 TRP B 66 SER B 71 -1 N TRP B 66 O LEU B 81 SHEET 3 F 3 SER B 103 PRO B 106 -1 O SER B 103 N PHE B 69 SHEET 1 G 4 SER B 125 VAL B 132 0 SHEET 2 G 4 LYS B 115 ASN B 121 -1 N LEU B 116 O ILE B 131 SHEET 3 G 4 SER B 150 ASN B 155 -1 O ARG B 152 N HIS B 117 SHEET 4 G 4 GLY B 176 TYR B 178 -1 O TYR B 178 N VAL B 151 SHEET 1 H 3 ARG B 167 PHE B 173 0 SHEET 2 H 3 TRP B 158 PHE B 163 -1 N TRP B 158 O PHE B 173 SHEET 3 H 3 SER B 193 ARG B 196 -1 O SER B 193 N TYR B 161 SHEET 1 I 4 ARG C 38 LEU C 41 0 SHEET 2 I 4 LYS C 25 TYR C 29 -1 N LEU C 28 O CYS C 39 SHEET 3 I 4 SER C 58 SER C 63 -1 O GLN C 60 N ILE C 27 SHEET 4 I 4 GLY C 84 TYR C 86 -1 O TYR C 86 N ILE C 59 SHEET 1 J 3 ARG C 75 LEU C 81 0 SHEET 2 J 3 TRP C 66 SER C 71 -1 N TRP C 66 O LEU C 81 SHEET 3 J 3 SER C 103 PRO C 106 -1 O ARG C 105 N LEU C 67 SHEET 1 K 4 SER C 125 VAL C 132 0 SHEET 2 K 4 LYS C 115 ASN C 121 -1 N LEU C 116 O ILE C 131 SHEET 3 K 4 SER C 150 ASN C 155 -1 O ARG C 152 N HIS C 117 SHEET 4 K 4 GLY C 176 TYR C 178 -1 O TYR C 178 N VAL C 151 SHEET 1 L 3 ARG C 167 PHE C 173 0 SHEET 2 L 3 TRP C 158 PHE C 163 -1 N GLY C 160 O TYR C 171 SHEET 3 L 3 SER C 193 ARG C 196 -1 O SER C 193 N TYR C 161 CISPEP 1 GLY A 64 PRO A 65 0 -1.02 CISPEP 2 GLY B 64 PRO B 65 0 -0.59 CISPEP 3 GLY C 64 PRO C 65 0 -0.93 SITE 1 AC1 5 ARG A 75 ASP A 185 HOH A 300 ARG B 75 SITE 2 AC1 5 ARG C 75 SITE 1 AC2 4 SER A 111 ASN A 155 GLY A 156 ARG A 175 SITE 1 AC3 4 ARG A 72 HOH A 201 ARG C 105 HOH C 214 SITE 1 AC4 4 LYS A 37 ARG A 38 HOH A 202 LYS B 128 SITE 1 AC5 2 ARG B 147 EDO B 200 SITE 1 AC6 4 EDO B 1 GLN B 188 PRO B 189 HOH B 256 SITE 1 AC7 5 GLN A 60 VAL A 61 GLU A 62 ASP A 85 SITE 2 AC7 5 ARG B 127 SITE 1 AC8 3 ARG A 175 TRP B 89 ASP B 99 SITE 1 AC9 5 SER B 111 GLY B 156 ARG B 175 HOH B 222 SITE 2 AC9 5 HOH B 326 SITE 1 BC1 6 ARG A 105 SER B 71 ARG B 72 ARG B 75 SITE 2 BC1 6 HOH B 269 HOH B 295 CRYST1 98.778 82.627 63.592 90.00 97.92 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010124 0.000000 0.001408 0.00000 SCALE2 0.000000 0.012103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015877 0.00000