HEADER TRANSCRIPTION REGULATOR 01-FEB-11 3QKX TITLE CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL REGULATOR (HI0893) TITLE 2 FROM HAEMOPHILUS INFLUENZAE RD AT 2.35 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR HI_0893; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TETR-FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: HI_0893; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3QKX 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3QKX 1 REMARK REVDAT 2 20-JUL-11 3QKX 1 KEYWDS REVDAT 1 02-MAR-11 3QKX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (HI0893) FROM HAEMOPHILUS INFLUENZAE RD AT 2.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1305 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.396 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.467 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3117 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2103 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4231 ; 1.205 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5139 ; 1.020 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 6.181 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;39.702 ;24.803 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;16.550 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.512 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3443 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 645 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1868 ; 0.594 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 739 ; 0.147 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2999 ; 1.135 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1249 ; 1.823 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1218 ; 2.793 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 8 6 REMARK 3 1 B 7 B 8 6 REMARK 3 2 A 9 A 53 4 REMARK 3 2 B 9 B 53 4 REMARK 3 3 A 54 A 103 4 REMARK 3 3 B 54 B 103 4 REMARK 3 4 A 104 A 112 2 REMARK 3 4 B 104 B 112 2 REMARK 3 5 A 113 A 121 4 REMARK 3 5 B 113 B 121 4 REMARK 3 6 A 122 A 171 6 REMARK 3 6 B 122 B 171 6 REMARK 3 7 A 172 A 187 2 REMARK 3 7 B 172 B 187 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 147 ; 0.320 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1467 ; 0.700 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 564 ; 1.600 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 147 ; 0.770 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1467 ; 0.750 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 564 ; 1.080 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1160 24.0510 24.6970 REMARK 3 T TENSOR REMARK 3 T11: 1.0367 T22: 0.3126 REMARK 3 T33: 0.1662 T12: 0.1433 REMARK 3 T13: -0.0676 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 12.5563 L22: 3.8192 REMARK 3 L33: 7.8458 L12: -6.9856 REMARK 3 L13: 6.0156 L23: -4.2645 REMARK 3 S TENSOR REMARK 3 S11: -0.4948 S12: -0.9560 S13: -0.7155 REMARK 3 S21: 0.1663 S22: 0.6817 S23: 0.2988 REMARK 3 S31: -0.2669 S32: -0.9354 S33: -0.1869 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 57.7600 11.7940 37.7890 REMARK 3 T TENSOR REMARK 3 T11: 0.4369 T22: 0.1816 REMARK 3 T33: 0.0892 T12: 0.0080 REMARK 3 T13: 0.0532 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 5.7532 L22: 6.5805 REMARK 3 L33: 4.8903 L12: -3.8531 REMARK 3 L13: -1.8149 L23: -1.1459 REMARK 3 S TENSOR REMARK 3 S11: 0.6067 S12: 0.1599 S13: -0.0658 REMARK 3 S21: -0.8940 S22: -0.2231 S23: -0.0727 REMARK 3 S31: -0.3693 S32: -0.1401 S33: -0.3836 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 73 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0580 20.4480 56.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.2847 T22: 0.0858 REMARK 3 T33: 0.2625 T12: 0.0494 REMARK 3 T13: -0.0573 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 15.9968 L22: 7.7067 REMARK 3 L33: 3.2107 L12: -11.0719 REMARK 3 L13: 2.6587 L23: -2.4312 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.4508 S13: -0.6923 REMARK 3 S21: 0.0298 S22: 0.1466 S23: 0.6124 REMARK 3 S31: -0.3063 S32: 0.1234 S33: -0.1787 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 74 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): 50.8760 8.3830 56.0130 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.2436 REMARK 3 T33: 0.0990 T12: 0.0044 REMARK 3 T13: 0.0075 T23: 0.1181 REMARK 3 L TENSOR REMARK 3 L11: 6.4283 L22: 3.0192 REMARK 3 L33: 4.0795 L12: -0.5018 REMARK 3 L13: -1.9618 L23: 1.2001 REMARK 3 S TENSOR REMARK 3 S11: -0.1604 S12: -0.8247 S13: -0.4895 REMARK 3 S21: 0.0672 S22: 0.0445 S23: -0.0913 REMARK 3 S31: -0.3197 S32: 0.8022 S33: 0.1159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. THE MODELING OF MSE B65 IN DUAL CONFORMATION IS REMARK 3 SUPPORTED BY THE ANOMALOUS DIFFERENCE FOURIER MAP. 6. RESIDUES REMARK 3 166-168 OF CHAIN A WERE NOT MODELED DUE TO POOR ELECTRON DENSITY REMARK 3 IN THIS REGION. 7. ETHYLENE GLYCOL (EDO) AND SULFATE (SO4) FROM REMARK 3 THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED REMARK 3 INTO THE SOLVENT STRUCTURE. 8. TLS GROUPS WERE ASSIGNED WITH THE REMARK 3 AID OF THE TLSMD SERVER. REMARK 4 REMARK 4 3QKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.33 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954,0.91837,0.97917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : 1.32200 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.80 M LITHIUM SULFATE, 0.1M HEPES PH REMARK 280 7.33, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.22267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.11133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.22267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.11133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: STATIC LIGHT SCATTERING WITH ANALYTICAL SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 166 REMARK 465 PHE A 167 REMARK 465 ASP A 168 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 GLN B 3 REMARK 465 ALA B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 NZ REMARK 470 LEU A 19 CD1 CD2 REMARK 470 GLN A 27 OE1 NE2 REMARK 470 LEU A 31 CG CD1 CD2 REMARK 470 LYS A 32 CE NZ REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 49 CD CE NZ REMARK 470 LYS A 51 CE NZ REMARK 470 GLU A 53 CD OE1 OE2 REMARK 470 PHE A 63 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 72 CE NZ REMARK 470 LYS A 106 CD CE NZ REMARK 470 PHE A 114 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ASP A 116 CG OD1 OD2 REMARK 470 ILE A 117 CG1 CG2 CD1 REMARK 470 LYS A 119 CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 135 CE NZ REMARK 470 GLU A 141 OE1 OE2 REMARK 470 LYS A 163 CE NZ REMARK 470 PHE A 164 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 165 CG1 CG2 CD1 REMARK 470 LYS A 170 CD CE NZ REMARK 470 LYS B 35 NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 ASN B 113 CG OD1 ND2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 ASP B 116 OD1 OD2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 ASN B 120 OD1 ND2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 GLU B 141 CD OE1 OE2 REMARK 470 GLU B 172 OE1 OE2 REMARK 470 LYS B 187 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 120 19.50 131.81 REMARK 500 SER A 151 -88.16 -133.23 REMARK 500 SER B 151 -90.83 -121.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 3 ALA A 4 137.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 399392 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (1-187) WAS EXPRESSED WITH THE PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3QKX A 1 187 UNP P44923 Y893_HAEIN 1 187 DBREF 3QKX B 1 187 UNP P44923 Y893_HAEIN 1 187 SEQADV 3QKX GLY A 0 UNP P44923 EXPRESSION TAG SEQADV 3QKX GLY B 0 UNP P44923 EXPRESSION TAG SEQRES 1 A 188 GLY MSE ARG GLN ALA LYS THR ASP LEU ALA GLU GLN ILE SEQRES 2 A 188 PHE SER ALA THR ASP ARG LEU MSE ALA ARG GLU GLY LEU SEQRES 3 A 188 ASN GLN LEU SER MSE LEU LYS LEU ALA LYS GLU ALA ASN SEQRES 4 A 188 VAL ALA ALA GLY THR ILE TYR LEU TYR PHE LYS ASN LYS SEQRES 5 A 188 ASP GLU LEU LEU GLU GLN PHE ALA HIS ARG VAL PHE SER SEQRES 6 A 188 MSE PHE MSE ALA THR LEU GLU LYS ASP PHE ASP GLU THR SEQRES 7 A 188 LYS PRO PHE PHE GLU GLN TYR ARG GLN MSE TRP LYS ASN SEQRES 8 A 188 ILE TRP TYR PHE LEU GLN GLU ASN PRO THR ILE LEU SER SEQRES 9 A 188 ASN LEU LYS GLN TYR GLU SER LEU PRO ASN PHE LYS ASP SEQRES 10 A 188 ILE CYS LYS ASN ILE LYS ASN CYS ARG TRP ASP LEU PHE SEQRES 11 A 188 CYS HIS GLN ALA GLN LYS ALA GLY LEU LEU ALA GLU LEU SEQRES 12 A 188 SER GLU ASP ILE LEU PHE LEU LEU SER LEU LYS THR ALA SEQRES 13 A 188 ILE ASN LEU ALA SER ASP ALA LYS PHE ILE ASP PHE ASP SEQRES 14 A 188 LEU LYS PRO GLU ILE LEU GLU SER VAL ILE GLU ARG SER SEQRES 15 A 188 TRP ARG ALA ILE GLN LYS SEQRES 1 B 188 GLY MSE ARG GLN ALA LYS THR ASP LEU ALA GLU GLN ILE SEQRES 2 B 188 PHE SER ALA THR ASP ARG LEU MSE ALA ARG GLU GLY LEU SEQRES 3 B 188 ASN GLN LEU SER MSE LEU LYS LEU ALA LYS GLU ALA ASN SEQRES 4 B 188 VAL ALA ALA GLY THR ILE TYR LEU TYR PHE LYS ASN LYS SEQRES 5 B 188 ASP GLU LEU LEU GLU GLN PHE ALA HIS ARG VAL PHE SER SEQRES 6 B 188 MSE PHE MSE ALA THR LEU GLU LYS ASP PHE ASP GLU THR SEQRES 7 B 188 LYS PRO PHE PHE GLU GLN TYR ARG GLN MSE TRP LYS ASN SEQRES 8 B 188 ILE TRP TYR PHE LEU GLN GLU ASN PRO THR ILE LEU SER SEQRES 9 B 188 ASN LEU LYS GLN TYR GLU SER LEU PRO ASN PHE LYS ASP SEQRES 10 B 188 ILE CYS LYS ASN ILE LYS ASN CYS ARG TRP ASP LEU PHE SEQRES 11 B 188 CYS HIS GLN ALA GLN LYS ALA GLY LEU LEU ALA GLU LEU SEQRES 12 B 188 SER GLU ASP ILE LEU PHE LEU LEU SER LEU LYS THR ALA SEQRES 13 B 188 ILE ASN LEU ALA SER ASP ALA LYS PHE ILE ASP PHE ASP SEQRES 14 B 188 LEU LYS PRO GLU ILE LEU GLU SER VAL ILE GLU ARG SER SEQRES 15 B 188 TRP ARG ALA ILE GLN LYS MODRES 3QKX MSE A 20 MET SELENOMETHIONINE MODRES 3QKX MSE A 30 MET SELENOMETHIONINE MODRES 3QKX MSE A 65 MET SELENOMETHIONINE MODRES 3QKX MSE A 67 MET SELENOMETHIONINE MODRES 3QKX MSE A 87 MET SELENOMETHIONINE MODRES 3QKX MSE B 20 MET SELENOMETHIONINE MODRES 3QKX MSE B 30 MET SELENOMETHIONINE MODRES 3QKX MSE B 65 MET SELENOMETHIONINE MODRES 3QKX MSE B 67 MET SELENOMETHIONINE MODRES 3QKX MSE B 87 MET SELENOMETHIONINE HET MSE A 20 8 HET MSE A 30 8 HET MSE A 65 8 HET MSE A 67 8 HET MSE A 87 8 HET MSE B 20 8 HET MSE B 30 8 HET MSE B 65 13 HET MSE B 67 8 HET MSE B 87 8 HET EDO A 202 4 HET SO4 A 205 5 HET SO4 A 207 5 HET SO4 A 208 5 HET SO4 A 209 5 HET CL B 201 1 HET EDO B 203 8 HET SO4 B 204 5 HET SO4 B 206 5 HET SO4 B 210 5 HET SO4 B 211 5 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 SO4 8(O4 S 2-) FORMUL 8 CL CL 1- FORMUL 14 HOH *47(H2 O) HELIX 1 1 ALA A 4 GLU A 23 1 20 HELIX 2 2 SER A 29 ASN A 38 1 10 HELIX 3 3 ALA A 40 PHE A 48 1 9 HELIX 4 4 ASN A 50 LYS A 72 1 23 HELIX 5 5 PRO A 79 ASN A 98 1 20 HELIX 6 6 ASN A 98 GLU A 109 1 12 HELIX 7 7 CYS A 124 GLY A 137 1 14 HELIX 8 8 SER A 143 SER A 151 1 9 HELIX 9 9 LEU A 152 ILE A 165 1 14 HELIX 10 10 LYS A 170 ALA A 184 1 15 HELIX 11 11 ASP B 7 GLU B 23 1 17 HELIX 12 12 GLY B 24 LEU B 28 5 5 HELIX 13 13 SER B 29 ALA B 37 1 9 HELIX 14 14 ALA B 40 PHE B 48 1 9 HELIX 15 15 ASN B 50 LYS B 72 1 23 HELIX 16 16 PRO B 79 ASN B 98 1 20 HELIX 17 17 ASN B 98 GLU B 109 1 12 HELIX 18 18 ASN B 113 ASN B 120 1 8 HELIX 19 19 CYS B 124 ALA B 136 1 13 HELIX 20 20 SER B 143 SER B 151 1 9 HELIX 21 21 LEU B 152 ALA B 159 1 8 HELIX 22 22 SER B 160 LYS B 170 1 11 HELIX 23 23 LYS B 170 ALA B 184 1 15 LINK C LEU A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N ALA A 21 1555 1555 1.33 LINK C SER A 29 N MSE A 30 1555 1555 1.32 LINK C MSE A 30 N LEU A 31 1555 1555 1.34 LINK C SER A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N PHE A 66 1555 1555 1.33 LINK C PHE A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N ALA A 68 1555 1555 1.33 LINK C GLN A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N TRP A 88 1555 1555 1.33 LINK C LEU B 19 N MSE B 20 1555 1555 1.32 LINK C MSE B 20 N ALA B 21 1555 1555 1.34 LINK C SER B 29 N MSE B 30 1555 1555 1.32 LINK C MSE B 30 N LEU B 31 1555 1555 1.33 LINK C SER B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N PHE B 66 1555 1555 1.34 LINK C PHE B 66 N MSE B 67 1555 1555 1.34 LINK C MSE B 67 N ALA B 68 1555 1555 1.35 LINK C GLN B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N TRP B 88 1555 1555 1.32 CISPEP 1 PRO A 112 ASN A 113 0 -0.31 SITE 1 AC1 1 ASP A 127 SITE 1 AC2 3 SER A 176 ARG A 180 HOH A 240 SITE 1 AC3 4 LEU A 28 SER A 29 MSE A 30 LYS A 51 SITE 1 AC4 2 ARG A 85 LYS A 89 SITE 1 AC5 1 LYS A 78 SITE 1 AC6 4 GLY A 24 ASN A 26 ASN B 26 GLN B 27 SITE 1 AC7 3 PHE B 66 PHE B 148 LYS B 153 SITE 1 AC8 4 SER B 160 ALA B 162 LYS B 163 HOH B 251 SITE 1 AC9 1 ARG B 85 SITE 1 BC1 2 SER B 176 ARG B 180 SITE 1 BC2 5 TYR B 45 ASN B 50 LYS B 51 HOH B 213 SITE 2 BC2 5 HOH B 228 CRYST1 71.160 71.160 159.334 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014053 0.008113 0.000000 0.00000 SCALE2 0.000000 0.016227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006276 0.00000