HEADER ISOMERASE 02-FEB-11 3QLD TITLE STRUCTURE OF PROBABLE MANDELATE RACEMASE (AALAA1DRAFT_2112) FROM TITLE 2 ALICYCLOBACILLUS ACIDOCALDARIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALICYCLOBACILLUS ACIDOCALDARIUS LAA1; SOURCE 3 ORGANISM_TAXID: 543302; SOURCE 4 GENE: AALAA1DRAFT_2112; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, PSI-2, ISOMERASE, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3QLD 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 03-JUN-15 3QLD 1 REMARK REVDAT 3 09-NOV-11 3QLD 1 KEYWDS REVDAT 2 20-JUL-11 3QLD 1 AUTHOR KEYWDS REVDAT 1 27-APR-11 3QLD 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO JRNL TITL STRUCTURE OF PROBABLE MANDELATE RACEMASE (AALAA1DRAFT_2112) JRNL TITL 2 FROM ALICYCLOBACILLUS ACIDOCALDARIUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 56720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.368 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6106 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8318 ; 1.921 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 6.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;33.514 ;22.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 993 ;15.686 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 71 ;21.221 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 930 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4685 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3826 ; 1.276 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6141 ; 2.185 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2280 ; 3.414 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2177 ; 5.467 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3QLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8K, 0.2M AMMONIUM SULFATE, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.02700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 MSE B 0 REMARK 465 SER B 83 REMARK 465 GLN B 84 REMARK 465 ASP B 85 REMARK 465 GLN B 86 REMARK 465 LEU B 379 REMARK 465 GLU B 380 REMARK 465 GLY B 381 REMARK 465 HIS B 382 REMARK 465 HIS B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 329 CD1 TYR A 329 CE1 0.095 REMARK 500 GLU B 203 CD GLU B 203 OE2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 149 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG B 201 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 272 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 365 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 365 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 20 -110.37 -78.21 REMARK 500 HIS A 22 -3.74 66.37 REMARK 500 HIS A 70 -54.00 -131.19 REMARK 500 ASP A 176 -69.39 -143.79 REMARK 500 GLU A 225 47.11 -75.39 REMARK 500 ASP A 227 122.35 -170.78 REMARK 500 ASP A 245 -86.73 -117.39 REMARK 500 MSE A 298 -70.60 -167.00 REMARK 500 LEU A 379 20.30 102.37 REMARK 500 HIS B 70 -56.87 -132.11 REMARK 500 ARG B 80 21.87 -77.62 REMARK 500 ARG B 175 58.55 -149.94 REMARK 500 ASP B 176 -77.48 -141.91 REMARK 500 ASP B 245 -88.30 -123.68 REMARK 500 TYR B 299 54.92 34.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9710A RELATED DB: TARGETDB DBREF 3QLD A 3 379 UNP B7DSY7 B7DSY7_9BACL 3 379 DBREF 3QLD B 3 379 UNP B7DSY7 B7DSY7_9BACL 3 379 SEQADV 3QLD MSE A 0 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD SER A 1 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD LEU A 2 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD GLU A 380 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD GLY A 381 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS A 382 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS A 383 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS A 384 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS A 385 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS A 386 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS A 387 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD MSE B 0 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD SER B 1 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD LEU B 2 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD GLU B 380 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD GLY B 381 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS B 382 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS B 383 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS B 384 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS B 385 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS B 386 UNP B7DSY7 EXPRESSION TAG SEQADV 3QLD HIS B 387 UNP B7DSY7 EXPRESSION TAG SEQRES 1 A 388 MSE SER LEU GLN THR CYS VAL LEU HIS ARG LEU SER LEU SEQRES 2 A 388 PRO LEU LYS PHE PRO MSE ARG THR ALA HIS GLY HIS ILE SEQRES 3 A 388 ARG GLU LYS GLN ALA ILE LEU VAL GLN LEU VAL ASP ALA SEQRES 4 A 388 ASP GLY ILE GLU GLY TRP SER GLU CYS VAL ALA LEU ALA SEQRES 5 A 388 GLU PRO THR TYR THR GLU GLU CYS THR ASP THR ALA TRP SEQRES 6 A 388 VAL MSE LEU VAL HIS HIS LEU VAL PRO ARG PHE ALA ARG SEQRES 7 A 388 TRP LEU ARG ALA ALA SER GLN ASP GLN ASP VAL ASP PRO SEQRES 8 A 388 ARG THR VAL CYS GLU ALA LEU ARG ASP VAL ARG GLY ASN SEQRES 9 A 388 ARG MSE SER VAL ALA ALA ILE GLU MSE ALA VAL TRP ASP SEQRES 10 A 388 TRP TYR ALA ALA ARG THR GLY GLN PRO LEU VAL GLY LEU SEQRES 11 A 388 LEU GLY GLY GLY ARG ASP ARG VAL GLU VAL SER ALA THR SEQRES 12 A 388 LEU GLY MSE SER GLU SER LEU ASP VAL LEU ILE GLN SER SEQRES 13 A 388 VAL ASP ALA ALA VAL GLU GLN GLY PHE ARG ARG VAL LYS SEQRES 14 A 388 LEU LYS ILE ALA PRO GLY ARG ASP ARG ALA ALA ILE LYS SEQRES 15 A 388 ALA VAL ARG LEU ARG TYR PRO ASP LEU ALA ILE ALA ALA SEQRES 16 A 388 ASP ALA ASN GLY SER TYR ARG PRO GLU ASP ALA PRO VAL SEQRES 17 A 388 LEU ARG GLN LEU ASP ALA TYR ASP LEU GLN PHE ILE GLU SEQRES 18 A 388 GLN PRO LEU PRO GLU ASP ASP TRP PHE ASP LEU ALA LYS SEQRES 19 A 388 LEU GLN ALA SER LEU ARG THR PRO VAL CYS LEU ASP GLU SEQRES 20 A 388 SER VAL ARG SER VAL ARG GLU LEU LYS LEU THR ALA ARG SEQRES 21 A 388 LEU GLY ALA ALA ARG VAL LEU ASN VAL LYS PRO GLY ARG SEQRES 22 A 388 LEU GLY GLY PHE GLY ALA THR LEU ARG ALA LEU ASP VAL SEQRES 23 A 388 ALA GLY GLU ALA GLY MSE ALA ALA TRP VAL GLY GLY MSE SEQRES 24 A 388 TYR GLU THR GLY VAL GLY ARG VAL HIS GLY LEU ILE ALA SEQRES 25 A 388 ALA ALA LEU PRO LEU MSE ARG TYR ALA THR ASP LEU GLY SEQRES 26 A 388 PRO SER ASP ARG TYR PHE GLU GLN ASP VAL LEU LYS GLU SEQRES 27 A 388 PRO ILE ALA PHE VAL GLU PRO GLY VAL ILE GLN VAL PRO SEQRES 28 A 388 GLN CYS ALA GLY VAL ALA ASP TRP VAL ASP ARG ASP ALA SEQRES 29 A 388 VAL ARG ARG PHE SER THR ALA THR TRP SER VAL ASP LEU SEQRES 30 A 388 ARG THR LEU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 388 MSE SER LEU GLN THR CYS VAL LEU HIS ARG LEU SER LEU SEQRES 2 B 388 PRO LEU LYS PHE PRO MSE ARG THR ALA HIS GLY HIS ILE SEQRES 3 B 388 ARG GLU LYS GLN ALA ILE LEU VAL GLN LEU VAL ASP ALA SEQRES 4 B 388 ASP GLY ILE GLU GLY TRP SER GLU CYS VAL ALA LEU ALA SEQRES 5 B 388 GLU PRO THR TYR THR GLU GLU CYS THR ASP THR ALA TRP SEQRES 6 B 388 VAL MSE LEU VAL HIS HIS LEU VAL PRO ARG PHE ALA ARG SEQRES 7 B 388 TRP LEU ARG ALA ALA SER GLN ASP GLN ASP VAL ASP PRO SEQRES 8 B 388 ARG THR VAL CYS GLU ALA LEU ARG ASP VAL ARG GLY ASN SEQRES 9 B 388 ARG MSE SER VAL ALA ALA ILE GLU MSE ALA VAL TRP ASP SEQRES 10 B 388 TRP TYR ALA ALA ARG THR GLY GLN PRO LEU VAL GLY LEU SEQRES 11 B 388 LEU GLY GLY GLY ARG ASP ARG VAL GLU VAL SER ALA THR SEQRES 12 B 388 LEU GLY MSE SER GLU SER LEU ASP VAL LEU ILE GLN SER SEQRES 13 B 388 VAL ASP ALA ALA VAL GLU GLN GLY PHE ARG ARG VAL LYS SEQRES 14 B 388 LEU LYS ILE ALA PRO GLY ARG ASP ARG ALA ALA ILE LYS SEQRES 15 B 388 ALA VAL ARG LEU ARG TYR PRO ASP LEU ALA ILE ALA ALA SEQRES 16 B 388 ASP ALA ASN GLY SER TYR ARG PRO GLU ASP ALA PRO VAL SEQRES 17 B 388 LEU ARG GLN LEU ASP ALA TYR ASP LEU GLN PHE ILE GLU SEQRES 18 B 388 GLN PRO LEU PRO GLU ASP ASP TRP PHE ASP LEU ALA LYS SEQRES 19 B 388 LEU GLN ALA SER LEU ARG THR PRO VAL CYS LEU ASP GLU SEQRES 20 B 388 SER VAL ARG SER VAL ARG GLU LEU LYS LEU THR ALA ARG SEQRES 21 B 388 LEU GLY ALA ALA ARG VAL LEU ASN VAL LYS PRO GLY ARG SEQRES 22 B 388 LEU GLY GLY PHE GLY ALA THR LEU ARG ALA LEU ASP VAL SEQRES 23 B 388 ALA GLY GLU ALA GLY MSE ALA ALA TRP VAL GLY GLY MSE SEQRES 24 B 388 TYR GLU THR GLY VAL GLY ARG VAL HIS GLY LEU ILE ALA SEQRES 25 B 388 ALA ALA LEU PRO LEU MSE ARG TYR ALA THR ASP LEU GLY SEQRES 26 B 388 PRO SER ASP ARG TYR PHE GLU GLN ASP VAL LEU LYS GLU SEQRES 27 B 388 PRO ILE ALA PHE VAL GLU PRO GLY VAL ILE GLN VAL PRO SEQRES 28 B 388 GLN CYS ALA GLY VAL ALA ASP TRP VAL ASP ARG ASP ALA SEQRES 29 B 388 VAL ARG ARG PHE SER THR ALA THR TRP SER VAL ASP LEU SEQRES 30 B 388 ARG THR LEU GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3QLD MSE A 18 MET SELENOMETHIONINE MODRES 3QLD MSE A 66 MET SELENOMETHIONINE MODRES 3QLD MSE A 105 MET SELENOMETHIONINE MODRES 3QLD MSE A 112 MET SELENOMETHIONINE MODRES 3QLD MSE A 145 MET SELENOMETHIONINE MODRES 3QLD MSE A 291 MET SELENOMETHIONINE MODRES 3QLD MSE A 298 MET SELENOMETHIONINE MODRES 3QLD MSE A 317 MET SELENOMETHIONINE MODRES 3QLD MSE B 18 MET SELENOMETHIONINE MODRES 3QLD MSE B 66 MET SELENOMETHIONINE MODRES 3QLD MSE B 105 MET SELENOMETHIONINE MODRES 3QLD MSE B 112 MET SELENOMETHIONINE MODRES 3QLD MSE B 145 MET SELENOMETHIONINE MODRES 3QLD MSE B 291 MET SELENOMETHIONINE MODRES 3QLD MSE B 298 MET SELENOMETHIONINE MODRES 3QLD MSE B 317 MET SELENOMETHIONINE HET MSE A 18 16 HET MSE A 66 8 HET MSE A 105 8 HET MSE A 112 8 HET MSE A 145 8 HET MSE A 291 8 HET MSE A 298 16 HET MSE A 317 8 HET MSE B 18 16 HET MSE B 66 8 HET MSE B 105 8 HET MSE B 112 8 HET MSE B 145 8 HET MSE B 291 8 HET MSE B 298 8 HET MSE B 317 8 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 B 401 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *235(H2 O) HELIX 1 1 CYS A 59 HIS A 70 1 12 HELIX 2 2 HIS A 70 ARG A 80 1 11 HELIX 3 3 ALA A 81 ASP A 85 5 5 HELIX 4 4 ASP A 89 ARG A 98 5 10 HELIX 5 5 ASN A 103 GLY A 123 1 21 HELIX 6 6 PRO A 125 LEU A 130 1 6 HELIX 7 7 SER A 148 GLN A 162 1 15 HELIX 8 8 ASP A 176 TYR A 187 1 12 HELIX 9 9 ARG A 201 GLU A 203 5 3 HELIX 10 10 ASP A 204 LEU A 211 1 8 HELIX 11 11 ASP A 212 ASP A 215 5 4 HELIX 12 12 ASP A 227 LEU A 238 1 12 HELIX 13 13 SER A 250 GLY A 261 1 12 HELIX 14 14 LYS A 269 GLY A 274 1 6 HELIX 15 15 GLY A 275 ALA A 289 1 15 HELIX 16 16 THR A 301 ALA A 313 1 13 HELIX 17 17 PRO A 325 TYR A 329 5 5 HELIX 18 18 VAL A 355 VAL A 359 5 5 HELIX 19 19 ASP A 360 PHE A 367 1 8 HELIX 20 20 CYS B 59 HIS B 70 1 12 HELIX 21 21 HIS B 70 ARG B 80 1 11 HELIX 22 22 ASP B 89 ARG B 98 5 10 HELIX 23 23 ASN B 103 GLY B 123 1 21 HELIX 24 24 PRO B 125 GLY B 131 1 7 HELIX 25 25 SER B 148 GLN B 162 1 15 HELIX 26 26 ASP B 176 TYR B 187 1 12 HELIX 27 27 ARG B 201 GLU B 203 5 3 HELIX 28 28 ASP B 204 LEU B 211 1 8 HELIX 29 29 ASP B 212 ASP B 215 5 4 HELIX 30 30 ASP B 227 SER B 237 1 11 HELIX 31 31 SER B 250 GLY B 261 1 12 HELIX 32 32 LYS B 269 GLY B 274 1 6 HELIX 33 33 GLY B 275 ALA B 289 1 15 HELIX 34 34 THR B 301 ALA B 312 1 12 HELIX 35 35 PRO B 325 TYR B 329 5 5 HELIX 36 36 VAL B 355 VAL B 359 5 5 HELIX 37 37 ASP B 360 PHE B 367 1 8 SHEET 1 A 5 GLU A 42 CYS A 47 0 SHEET 2 A 5 HIS A 24 ASP A 37 -1 N ILE A 31 O CYS A 47 SHEET 3 A 5 LEU A 2 ARG A 19 -1 N LEU A 10 O ALA A 30 SHEET 4 A 5 SER A 368 ASP A 375 -1 O THR A 369 N ARG A 9 SHEET 5 A 5 GLY A 381 HIS A 382 -1 O HIS A 382 N SER A 373 SHEET 1 B 2 ARG A 136 GLU A 138 0 SHEET 2 B 2 VAL A 346 GLN A 348 -1 O ILE A 347 N VAL A 137 SHEET 1 C 7 SER A 140 LEU A 143 0 SHEET 2 C 7 ARG A 166 LYS A 170 1 O LYS A 168 N ALA A 141 SHEET 3 C 7 ALA A 191 ASP A 195 1 O ALA A 193 N VAL A 167 SHEET 4 C 7 ILE A 219 GLU A 220 1 O GLU A 220 N ALA A 194 SHEET 5 C 7 VAL A 242 LEU A 244 1 O CYS A 243 N ILE A 219 SHEET 6 C 7 VAL A 265 VAL A 268 1 O ASN A 267 N LEU A 244 SHEET 7 C 7 ALA A 292 VAL A 295 1 O TRP A 294 N VAL A 268 SHEET 1 D 4 GLU B 42 CYS B 47 0 SHEET 2 D 4 GLY B 23 ASP B 37 -1 N LEU B 35 O GLY B 43 SHEET 3 D 4 LEU B 2 THR B 20 -1 N LEU B 12 O LYS B 28 SHEET 4 D 4 SER B 368 ASP B 375 -1 O TRP B 372 N LEU B 7 SHEET 1 E 2 ARG B 136 GLU B 138 0 SHEET 2 E 2 VAL B 346 GLN B 348 -1 O ILE B 347 N VAL B 137 SHEET 1 F 7 SER B 140 LEU B 143 0 SHEET 2 F 7 ARG B 166 LYS B 170 1 O LYS B 168 N LEU B 143 SHEET 3 F 7 ALA B 191 ASP B 195 1 O ALA B 193 N LEU B 169 SHEET 4 F 7 ILE B 219 GLU B 220 1 O GLU B 220 N ALA B 194 SHEET 5 F 7 VAL B 242 LEU B 244 1 O CYS B 243 N ILE B 219 SHEET 6 F 7 VAL B 265 VAL B 268 1 O ASN B 267 N LEU B 244 SHEET 7 F 7 ALA B 292 VAL B 295 1 O TRP B 294 N VAL B 268 LINK C PRO A 17 N AMSE A 18 1555 1555 1.34 LINK C PRO A 17 N BMSE A 18 1555 1555 1.32 LINK C AMSE A 18 N ARG A 19 1555 1555 1.33 LINK C BMSE A 18 N ARG A 19 1555 1555 1.33 LINK C VAL A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N LEU A 67 1555 1555 1.32 LINK C ARG A 104 N MSE A 105 1555 1555 1.34 LINK C MSE A 105 N SER A 106 1555 1555 1.33 LINK C GLU A 111 N MSE A 112 1555 1555 1.32 LINK C MSE A 112 N ALA A 113 1555 1555 1.34 LINK C GLY A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N SER A 146 1555 1555 1.33 LINK C GLY A 290 N MSE A 291 1555 1555 1.34 LINK C MSE A 291 N ALA A 292 1555 1555 1.33 LINK C AGLY A 297 N AMSE A 298 1555 1555 1.33 LINK C BGLY A 297 N BMSE A 298 1555 1555 1.33 LINK C AMSE A 298 N ATYR A 299 1555 1555 1.33 LINK C BMSE A 298 N BTYR A 299 1555 1555 1.34 LINK C LEU A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N ARG A 318 1555 1555 1.33 LINK C PRO B 17 N AMSE B 18 1555 1555 1.32 LINK C PRO B 17 N BMSE B 18 1555 1555 1.33 LINK C AMSE B 18 N ARG B 19 1555 1555 1.33 LINK C BMSE B 18 N ARG B 19 1555 1555 1.33 LINK C VAL B 65 N MSE B 66 1555 1555 1.32 LINK C MSE B 66 N LEU B 67 1555 1555 1.32 LINK C ARG B 104 N MSE B 105 1555 1555 1.34 LINK C MSE B 105 N SER B 106 1555 1555 1.37 LINK C GLU B 111 N MSE B 112 1555 1555 1.34 LINK C MSE B 112 N ALA B 113 1555 1555 1.32 LINK C GLY B 144 N MSE B 145 1555 1555 1.31 LINK C MSE B 145 N SER B 146 1555 1555 1.31 LINK C GLY B 290 N MSE B 291 1555 1555 1.34 LINK C MSE B 291 N ALA B 292 1555 1555 1.35 LINK C GLY B 297 N MSE B 298 1555 1555 1.32 LINK C MSE B 298 N ATYR B 299 1555 1555 1.33 LINK C MSE B 298 N BTYR B 299 1555 1555 1.33 LINK C LEU B 316 N MSE B 317 1555 1555 1.34 LINK C MSE B 317 N ARG B 318 1555 1555 1.34 SITE 1 AC1 5 ARG A 104 SER A 250 VAL A 251 ARG A 252 SITE 2 AC1 5 ARG A 281 SITE 1 AC2 5 ARG A 101 GLY A 102 ARG A 104 ARG A 252 SITE 2 AC2 5 HOH A 426 SITE 1 AC3 3 TRP A 64 HIS A 69 HIS A 383 SITE 1 AC4 4 ARG A 209 ARG A 239 HOH A 436 HOH A 479 SITE 1 AC5 4 ARG B 104 VAL B 251 ARG B 252 ARG B 281 CRYST1 54.698 82.054 77.947 90.00 104.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018282 0.000000 0.004761 0.00000 SCALE2 0.000000 0.012187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013257 0.00000