HEADER HYDROLASE 04-FEB-11 3QMF TITLE CRYSTAL STRUCUTURE OF AN INOSITOL MONOPHOSPHATASE FAMILY PROTEIN TITLE 2 (SAS2203) FROM STAPHYLOCOCCUS AUREUS MSSA476 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL MONOPHOSPHATASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.25; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 282459; SOURCE 4 STRAIN: MSSA476; SOURCE 5 GENE: SAS2203; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS FIG SUPERFAMILY, HYDROLASE, IMPASE FOLD EXPDTA X-RAY DIFFRACTION AUTHOR S.BHATTACHARYYA,D.DUTTA,A.K.GHOSH,A.K.DAS REVDAT 3 01-NOV-23 3QMF 1 REMARK SEQADV REVDAT 2 03-JUL-13 3QMF 1 JRNL REVDAT 1 18-JAN-12 3QMF 0 JRNL AUTH S.BHATTACHARYYA,D.DUTTA,B.SAHA,A.K.GHOSH,A.K.DAS JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL DUAL SPECIFIC INOSITOL JRNL TITL 2 MONOPHOSPHATASE/NADP(H) PHOSPHATASE (SAS2203) DELINEATES THE JRNL TITL 3 MOLECULAR BASIS OF SUBSTRATE SPECIFICITY JRNL REF BIOCHIMIE V. 94 879 2012 JRNL REFN ISSN 0300-9084 JRNL PMID 22197784 JRNL DOI 10.1016/J.BIOCHI.2011.12.007 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0095 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1046 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -2.32000 REMARK 3 B33 (A**2) : 0.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4095 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5543 ; 1.612 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 7.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;38.632 ;25.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 721 ;19.395 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.895 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3060 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2501 ; 0.570 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4020 ; 1.083 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 1.670 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1522 ; 2.663 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0873 11.1276 35.8497 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0136 REMARK 3 T33: 0.0413 T12: 0.0038 REMARK 3 T13: -0.0195 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.3937 L22: 2.0385 REMARK 3 L33: 2.3015 L12: 0.4163 REMARK 3 L13: -0.5554 L23: -0.2479 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: -0.0202 S13: 0.0553 REMARK 3 S21: 0.1779 S22: -0.0107 S23: -0.1405 REMARK 3 S31: -0.0506 S32: 0.1095 S33: -0.0655 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 265 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0324 3.1731 6.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.1379 REMARK 3 T33: 0.0814 T12: -0.0029 REMARK 3 T13: 0.0565 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.3443 L22: 3.5199 REMARK 3 L33: 2.1107 L12: 0.4159 REMARK 3 L13: -0.0714 L23: 1.0594 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.1608 S13: -0.3927 REMARK 3 S21: -0.6016 S22: 0.0280 S23: -0.2730 REMARK 3 S31: 0.0983 S32: 0.0449 S33: 0.0202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.597 REMARK 200 RESOLUTION RANGE LOW (A) : 71.894 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2P3N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULPHATE, 0.1M HEPES PH REMARK 280 7.0, 20%(W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.99150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.89350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.89350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.99150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 71 REMARK 465 LYS A 72 REMARK 465 SER A 73 REMARK 465 ASN A 74 REMARK 465 ALA A 75 REMARK 465 MET A 76 REMARK 465 ILE A 77 REMARK 465 THR A 78 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLU B -1 REMARK 465 LEU B 0 REMARK 465 MET B 1 REMARK 465 MET B 31 REMARK 465 THR B 32 REMARK 465 THR B 33 REMARK 465 GLU B 34 REMARK 465 THR B 35 REMARK 465 LYS B 36 REMARK 465 ARG B 37 REMARK 465 HIS B 38 REMARK 465 ARG B 39 REMARK 465 PHE B 40 REMARK 465 ASP B 41 REMARK 465 ASN B 45 REMARK 465 SER B 73 REMARK 465 ASN B 74 REMARK 465 ALA B 75 REMARK 465 MET B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CD CE NZ REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 52 CD OE1 NE2 REMARK 470 ARG A 265 CD NE CZ NH1 NH2 REMARK 470 THR B 2 OG1 CG2 REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 GLN B 55 CG CD OE1 NE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 ILE B 77 CG1 CG2 CD1 REMARK 470 THR B 78 OG1 CG2 REMARK 470 ASN B 79 CG OD1 ND2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 ARG B 265 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 115 NH1 ARG B 133 1.30 REMARK 500 OD1 ASP B 21 OD1 ASN B 22 1.73 REMARK 500 O ILE B 20 N ASN B 22 1.93 REMARK 500 O4 SO4 B 266 O HOH B 297 2.00 REMARK 500 NH1 ARG A 180 OD1 ASN B 95 2.11 REMARK 500 C ILE B 20 N ASN B 22 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 47 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP B 47 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 ASP B 47 CA - C - O ANGL. DEV. = -21.5 DEGREES REMARK 500 ASP B 47 CA - C - O ANGL. DEV. = -22.8 DEGREES REMARK 500 ASP B 47 CA - C - N ANGL. DEV. = 22.8 DEGREES REMARK 500 ASP B 47 CA - C - N ANGL. DEV. = 24.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 31.61 -99.49 REMARK 500 LYS A 36 126.24 -18.22 REMARK 500 GLU A 112 58.96 34.40 REMARK 500 ASN A 204 66.05 -157.82 REMARK 500 ASP B 3 165.51 114.42 REMARK 500 ILE B 20 -38.36 154.97 REMARK 500 ASP B 21 25.57 -56.87 REMARK 500 PRO B 25 -176.39 -60.54 REMARK 500 GLN B 26 -75.68 -54.42 REMARK 500 LEU B 27 109.21 -29.64 REMARK 500 ILE B 28 -77.65 -55.79 REMARK 500 MET B 29 134.70 -3.41 REMARK 500 VAL B 43 142.52 78.17 REMARK 500 ASP B 47 -32.75 41.81 REMARK 500 ASP B 47 -29.50 38.67 REMARK 500 GLU B 70 66.38 -61.66 REMARK 500 GLU B 71 -156.54 137.39 REMARK 500 GLU B 112 49.97 36.63 REMARK 500 ASN B 204 62.09 -176.17 REMARK 500 THR B 226 168.58 -46.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RYD RELATED DB: PDB DBREF 3QMF A 1 265 UNP Q6G709 Q6G709_STAAS 1 265 DBREF 3QMF B 1 265 UNP Q6G709 Q6G709_STAAS 1 265 SEQADV 3QMF HIS A -7 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS A -6 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS A -5 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS A -4 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS A -3 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS A -2 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF GLU A -1 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF LEU A 0 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS B -7 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS B -6 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS B -5 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS B -4 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS B -3 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF HIS B -2 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF GLU B -1 UNP Q6G709 EXPRESSION TAG SEQADV 3QMF LEU B 0 UNP Q6G709 EXPRESSION TAG SEQRES 1 A 273 HIS HIS HIS HIS HIS HIS GLU LEU MET THR ASP LYS THR SEQRES 2 A 273 LEU GLN GLN ILE ASP LYS LEU ILE CYS SER TRP LEU LYS SEQRES 3 A 273 GLN ILE ASP ASN VAL ILE PRO GLN LEU ILE MET GLU MET SEQRES 4 A 273 THR THR GLU THR LYS ARG HIS ARG PHE ASP LEU VAL THR SEQRES 5 A 273 ASN VAL ASP LYS GLN ILE GLN GLN GLN PHE GLN GLN PHE SEQRES 6 A 273 LEU ALA THR TYR PHE PRO GLU HIS GLN LEU LEU ALA GLU SEQRES 7 A 273 GLU LYS SER ASN ALA MET ILE THR ASN GLU ILE ASN HIS SEQRES 8 A 273 LEU TRP ILE MET ASP PRO ILE ASP GLY THR ALA ASN LEU SEQRES 9 A 273 VAL LYS GLN GLN GLU ASP TYR CYS ILE ILE LEU ALA TYR SEQRES 10 A 273 PHE TYR GLU GLY LYS PRO MET LEU SER TYR VAL TYR ASP SEQRES 11 A 273 TYR PRO HIS LYS LYS LEU TYR LYS ALA ILE ARG GLY GLU SEQRES 12 A 273 GLY ALA PHE CYS ASN GLY ILE LYS MET GLU GLU PRO PRO SEQRES 13 A 273 SER LEU LYS LEU GLU ASP ALA ILE ILE SER PHE ASN ALA SEQRES 14 A 273 GLN VAL MET ASN LEU ASP THR VAL GLN ASP LEU PHE ASP SEQRES 15 A 273 ALA SER PHE SER TYR ARG LEU VAL GLY ALA CYS GLY LEU SEQRES 16 A 273 ASP SER MET ARG VAL ALA LYS GLY GLN PHE GLY ALA HIS SEQRES 17 A 273 ILE ASN THR ASN PRO LYS PRO TRP ASP ILE ALA ALA GLN SEQRES 18 A 273 PHE LEU PHE ALA GLU LEU LEU ASN LEU LYS MET THR THR SEQRES 19 A 273 LEU ASP GLY LYS ALA ILE ASP HIS LEU LYS GLY ALA PRO SEQRES 20 A 273 PHE ILE ILE SER ASN LYS ALA CYS HIS GLU THR VAL LEU SEQRES 21 A 273 LYS ILE LEU ASN ALA ASN GLY GLY TYR GLN LYS TYR ARG SEQRES 1 B 273 HIS HIS HIS HIS HIS HIS GLU LEU MET THR ASP LYS THR SEQRES 2 B 273 LEU GLN GLN ILE ASP LYS LEU ILE CYS SER TRP LEU LYS SEQRES 3 B 273 GLN ILE ASP ASN VAL ILE PRO GLN LEU ILE MET GLU MET SEQRES 4 B 273 THR THR GLU THR LYS ARG HIS ARG PHE ASP LEU VAL THR SEQRES 5 B 273 ASN VAL ASP LYS GLN ILE GLN GLN GLN PHE GLN GLN PHE SEQRES 6 B 273 LEU ALA THR TYR PHE PRO GLU HIS GLN LEU LEU ALA GLU SEQRES 7 B 273 GLU LYS SER ASN ALA MET ILE THR ASN GLU ILE ASN HIS SEQRES 8 B 273 LEU TRP ILE MET ASP PRO ILE ASP GLY THR ALA ASN LEU SEQRES 9 B 273 VAL LYS GLN GLN GLU ASP TYR CYS ILE ILE LEU ALA TYR SEQRES 10 B 273 PHE TYR GLU GLY LYS PRO MET LEU SER TYR VAL TYR ASP SEQRES 11 B 273 TYR PRO HIS LYS LYS LEU TYR LYS ALA ILE ARG GLY GLU SEQRES 12 B 273 GLY ALA PHE CYS ASN GLY ILE LYS MET GLU GLU PRO PRO SEQRES 13 B 273 SER LEU LYS LEU GLU ASP ALA ILE ILE SER PHE ASN ALA SEQRES 14 B 273 GLN VAL MET ASN LEU ASP THR VAL GLN ASP LEU PHE ASP SEQRES 15 B 273 ALA SER PHE SER TYR ARG LEU VAL GLY ALA CYS GLY LEU SEQRES 16 B 273 ASP SER MET ARG VAL ALA LYS GLY GLN PHE GLY ALA HIS SEQRES 17 B 273 ILE ASN THR ASN PRO LYS PRO TRP ASP ILE ALA ALA GLN SEQRES 18 B 273 PHE LEU PHE ALA GLU LEU LEU ASN LEU LYS MET THR THR SEQRES 19 B 273 LEU ASP GLY LYS ALA ILE ASP HIS LEU LYS GLY ALA PRO SEQRES 20 B 273 PHE ILE ILE SER ASN LYS ALA CYS HIS GLU THR VAL LEU SEQRES 21 B 273 LYS ILE LEU ASN ALA ASN GLY GLY TYR GLN LYS TYR ARG HET SO4 A 266 5 HET SO4 A 267 5 HET SO4 B 266 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *79(H2 O) HELIX 1 1 THR A 5 ASP A 21 1 17 HELIX 2 2 VAL A 23 GLU A 30 1 8 HELIX 3 3 ASN A 45 PHE A 62 1 18 HELIX 4 4 GLY A 92 GLN A 99 1 8 HELIX 5 5 LYS A 151 ASP A 154 5 4 HELIX 6 6 ALA A 161 MET A 164 5 4 HELIX 7 7 ASN A 165 SER A 176 1 12 HELIX 8 8 ALA A 184 LYS A 194 1 11 HELIX 9 9 LYS A 206 ALA A 211 1 6 HELIX 10 10 ALA A 212 ASN A 221 1 10 HELIX 11 11 CYS A 247 ASN A 256 1 10 HELIX 12 12 THR B 5 GLN B 19 1 15 HELIX 13 13 ASP B 47 PHE B 62 1 16 HELIX 14 14 GLY B 92 GLN B 99 1 8 HELIX 15 15 LYS B 151 ASP B 154 5 4 HELIX 16 16 ASN B 165 SER B 176 1 12 HELIX 17 17 ALA B 184 LYS B 194 1 11 HELIX 18 18 LYS B 206 ALA B 211 1 6 HELIX 19 19 ALA B 212 LEU B 220 1 9 HELIX 20 20 CYS B 247 ASN B 256 1 10 SHEET 1 A 2 THR A 33 GLU A 34 0 SHEET 2 A 2 VAL A 43 THR A 44 -1 O VAL A 43 N GLU A 34 SHEET 1 B 7 GLN A 66 LEU A 68 0 SHEET 2 B 7 HIS A 83 ASP A 91 1 O TRP A 85 N LEU A 68 SHEET 3 B 7 CYS A 104 TYR A 111 -1 O CYS A 104 N ASP A 91 SHEET 4 B 7 LYS A 114 ASP A 122 -1 O LEU A 117 N TYR A 109 SHEET 5 B 7 LYS A 127 ILE A 132 -1 O ALA A 131 N SER A 118 SHEET 6 B 7 GLY A 136 CYS A 139 -1 O PHE A 138 N LYS A 130 SHEET 7 B 7 ILE A 142 MET A 144 -1 O ILE A 142 N CYS A 139 SHEET 1 C 5 SER A 178 TYR A 179 0 SHEET 2 C 5 ILE A 156 PHE A 159 1 N ILE A 157 O SER A 178 SHEET 3 C 5 ALA A 199 ASN A 202 1 O ALA A 199 N SER A 158 SHEET 4 C 5 PHE A 240 SER A 243 -1 O PHE A 240 N ASN A 202 SHEET 5 C 5 LYS A 223 THR A 226 -1 N LYS A 223 O SER A 243 SHEET 1 D 7 GLN B 66 LEU B 68 0 SHEET 2 D 7 HIS B 83 ASP B 91 1 O TRP B 85 N GLN B 66 SHEET 3 D 7 CYS B 104 TYR B 111 -1 O CYS B 104 N ASP B 91 SHEET 4 D 7 LYS B 114 ASP B 122 -1 O LEU B 117 N TYR B 109 SHEET 5 D 7 LYS B 127 ILE B 132 -1 O LYS B 127 N ASP B 122 SHEET 6 D 7 GLY B 136 CYS B 139 -1 O GLY B 136 N ILE B 132 SHEET 7 D 7 ILE B 142 MET B 144 -1 O MET B 144 N ALA B 137 SHEET 1 E 5 SER B 178 TYR B 179 0 SHEET 2 E 5 ILE B 156 PHE B 159 1 N ILE B 157 O SER B 178 SHEET 3 E 5 ALA B 199 ASN B 202 1 O ALA B 199 N SER B 158 SHEET 4 E 5 PHE B 240 SER B 243 -1 O PHE B 240 N ASN B 202 SHEET 5 E 5 LYS B 223 THR B 226 -1 N LYS B 223 O SER B 243 CISPEP 1 ILE B 24 PRO B 25 0 -17.16 CISPEP 2 PRO B 25 GLN B 26 0 -1.89 CISPEP 3 LEU B 27 ILE B 28 0 7.08 CISPEP 4 LEU B 42 VAL B 43 0 10.70 CISPEP 5 ASN B 79 GLU B 80 0 3.38 SITE 1 AC1 5 HIS A 38 ARG A 39 PHE A 40 ASP A 41 SITE 2 AC1 5 LYS A 206 SITE 1 AC2 5 GLY A 92 THR A 93 ASP A 209 HOH A 271 SITE 2 AC2 5 HOH A 306 SITE 1 AC3 7 ASP B 88 ASP B 91 GLY B 92 THR B 93 SITE 2 AC3 7 ASP B 209 HOH B 288 HOH B 297 CRYST1 49.983 68.350 143.787 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006955 0.00000