data_3QMI # _entry.id 3QMI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QMI pdb_00003qmi 10.2210/pdb3qmi/pdb NDB NA0951 ? ? RCSB RCSB063831 ? ? WWPDB D_1000063831 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QMB 'The same protein complexed with a different unmethylated CpG DNA.' unspecified PDB 3QMC 'The same protein complexed with a different unmethylated CpG DNA.' unspecified PDB 3QMD 'The same protein complexed with a different unmethylated CpG DNA.' unspecified PDB 3QMG 'The same protein complexed with a different unmethylated CpG DNA.' unspecified PDB 3QMH 'The same protein complexed with a different unmethylated CpG DNA.' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QMI _pdbx_database_status.recvd_initial_deposition_date 2011-02-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, C.' 1 'Bian, C.' 2 'MacKenzie, F.' 3 'Bountra, C.' 4 'Weigelt, J.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.M.' 7 'Min, J.' 8 'Structural Genomics Consortium (SGC)' 9 # _citation.id primary _citation.title 'The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain.' _citation.journal_abbrev 'Nat Commun' _citation.journal_volume 2 _citation.page_first 227 _citation.page_last 227 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21407193 _citation.pdbx_database_id_DOI 10.1038/ncomms1237 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, C.' 1 ? primary 'Bian, C.' 2 ? primary 'Lam, R.' 3 ? primary 'Dong, A.' 4 ? primary 'Min, J.' 5 ? # _cell.entry_id 3QMI _cell.length_a 30.624 _cell.length_b 75.009 _cell.length_c 125.905 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QMI _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CpG-binding protein' 9527.962 1 ? ? 'CXXC-type Zn finger, residues 161-222' ? 2 polymer syn "5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3'" 3663.392 2 ? ? 'DNA (nonmethylated CpG island)' ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 6 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CXXC-type zinc finger protein 1, PHD finger and CXXC domain-containing protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MHHHHHHSSRENLYFQGQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSS MHHHHHHSSRENLYFQGQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSS A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DA)(DA)(DC)(DG)(DT)(DT)(DG)(DG)(DC)' GCCAACGTTGGC B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 ARG n 1 11 GLU n 1 12 ASN n 1 13 LEU n 1 14 TYR n 1 15 PHE n 1 16 GLN n 1 17 GLY n 1 18 GLN n 1 19 ILE n 1 20 LYS n 1 21 ARG n 1 22 SER n 1 23 ALA n 1 24 ARG n 1 25 MET n 1 26 CYS n 1 27 GLY n 1 28 GLU n 1 29 CYS n 1 30 GLU n 1 31 ALA n 1 32 CYS n 1 33 ARG n 1 34 ARG n 1 35 THR n 1 36 GLU n 1 37 ASP n 1 38 CYS n 1 39 GLY n 1 40 HIS n 1 41 CYS n 1 42 ASP n 1 43 PHE n 1 44 CYS n 1 45 ARG n 1 46 ASP n 1 47 MET n 1 48 LYS n 1 49 LYS n 1 50 PHE n 1 51 GLY n 1 52 GLY n 1 53 PRO n 1 54 ASN n 1 55 LYS n 1 56 ILE n 1 57 ARG n 1 58 GLN n 1 59 LYS n 1 60 CYS n 1 61 ARG n 1 62 LEU n 1 63 ARG n 1 64 GLN n 1 65 CYS n 1 66 GLN n 1 67 LEU n 1 68 ARG n 1 69 ALA n 1 70 ARG n 1 71 GLU n 1 72 SER n 1 73 TYR n 1 74 LYS n 1 75 TYR n 1 76 PHE n 1 77 PRO n 1 78 SER n 1 79 SER n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DA n 2 6 DC n 2 7 DG n 2 8 DT n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CFP1, CGBP, CXXC1, PCCX1, PHF18' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name BL21-V2R-pRARE2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CXXC1_HUMAN Q9P0U4 1 QIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSS 161 ? 2 PDB 3QMI 3QMI 2 GCCAACGTTGGC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QMI A 18 ? 79 ? Q9P0U4 161 ? 222 ? 161 222 2 2 3QMI B 1 ? 12 ? 3QMI 1 ? 12 ? 1 12 3 2 3QMI C 1 ? 12 ? 3QMI 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QMI MET A 1 ? UNP Q9P0U4 ? ? 'expression tag' 144 1 1 3QMI HIS A 2 ? UNP Q9P0U4 ? ? 'expression tag' 145 2 1 3QMI HIS A 3 ? UNP Q9P0U4 ? ? 'expression tag' 146 3 1 3QMI HIS A 4 ? UNP Q9P0U4 ? ? 'expression tag' 147 4 1 3QMI HIS A 5 ? UNP Q9P0U4 ? ? 'expression tag' 148 5 1 3QMI HIS A 6 ? UNP Q9P0U4 ? ? 'expression tag' 149 6 1 3QMI HIS A 7 ? UNP Q9P0U4 ? ? 'expression tag' 150 7 1 3QMI SER A 8 ? UNP Q9P0U4 ? ? 'expression tag' 151 8 1 3QMI SER A 9 ? UNP Q9P0U4 ? ? 'expression tag' 152 9 1 3QMI ARG A 10 ? UNP Q9P0U4 ? ? 'expression tag' 153 10 1 3QMI GLU A 11 ? UNP Q9P0U4 ? ? 'expression tag' 154 11 1 3QMI ASN A 12 ? UNP Q9P0U4 ? ? 'expression tag' 155 12 1 3QMI LEU A 13 ? UNP Q9P0U4 ? ? 'expression tag' 156 13 1 3QMI TYR A 14 ? UNP Q9P0U4 ? ? 'expression tag' 157 14 1 3QMI PHE A 15 ? UNP Q9P0U4 ? ? 'expression tag' 158 15 1 3QMI GLN A 16 ? UNP Q9P0U4 ? ? 'expression tag' 159 16 1 3QMI GLY A 17 ? UNP Q9P0U4 ? ? 'expression tag' 160 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3QMI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-12-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97924 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97924 # _reflns.entry_id 3QMI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100.000 _reflns.d_resolution_high 2.100 _reflns.number_obs 8362 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3QMI _refine.ls_number_reflns_obs 8362 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.50 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 420 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 19.21 _refine.aniso_B[1][1] -0.17000 _refine.aniso_B[2][2] 0.13000 _refine.aniso_B[3][3] 0.04000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3QMB _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.186 _refine.overall_SU_ML 0.124 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.463 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 402 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 942 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 37.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.021 ? 970 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.361 2.596 ? 1394 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.157 5.000 ? 51 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.595 20.476 ? 21 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.193 15.000 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.281 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.078 0.200 ? 146 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.022 0.020 ? 564 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.564 1.500 ? 256 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.231 2.000 ? 399 'X-RAY DIFFRACTION' ? r_scbond_it 3.559 3.000 ? 714 'X-RAY DIFFRACTION' ? r_scangle_it 4.679 4.500 ? 995 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.15 _refine_ls_shell.number_reflns_R_work 558 _refine_ls_shell.R_factor_R_work 0.2780 _refine_ls_shell.percent_reflns_obs 91.67 _refine_ls_shell.R_factor_R_free 0.2170 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3QMI _struct.title 'Structural Basis of Selective Binding of Non-Methylated CpG islands (DNA-ACGT) by the CXXC Domain of CFP1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QMI _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'Structural Genomics Consortium, SGC, DNA BINDING, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 29 ? ARG A 34 ? CYS A 172 ARG A 177 1 ? 6 HELX_P HELX_P2 2 CYS A 41 ? MET A 47 ? CYS A 184 MET A 190 1 ? 7 HELX_P HELX_P3 3 LYS A 48 ? GLY A 51 ? LYS A 191 GLY A 194 5 ? 4 HELX_P HELX_P4 4 CYS A 60 ? GLN A 64 ? CYS A 203 GLN A 207 5 ? 5 HELX_P HELX_P5 5 ARG A 70 ? LYS A 74 ? ARG A 213 LYS A 217 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 26 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 169 A ZN 300 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc2 metalc ? ? A CYS 29 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 172 A ZN 300 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc3 metalc ? ? A CYS 32 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 175 A ZN 300 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc4 metalc ? ? A CYS 38 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 181 A ZN 301 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc5 metalc ? ? A CYS 41 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 184 A ZN 301 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc6 metalc ? ? A CYS 44 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 187 A ZN 301 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc7 metalc ? ? A CYS 60 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 203 A ZN 301 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc8 metalc ? ? A CYS 65 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 208 A ZN 300 1_555 ? ? ? ? ? ? ? 2.335 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 300 ? 4 'BINDING SITE FOR RESIDUE ZN A 300' AC2 Software A ZN 301 ? 4 'BINDING SITE FOR RESIDUE ZN A 301' AC3 Software A PEG 1 ? 2 'BINDING SITE FOR RESIDUE PEG A 1' AC4 Software A PEG 2 ? 3 'BINDING SITE FOR RESIDUE PEG A 2' AC5 Software C PO4 13 ? 4 'BINDING SITE FOR RESIDUE PO4 C 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 26 ? CYS A 169 . ? 1_555 ? 2 AC1 4 CYS A 29 ? CYS A 172 . ? 1_555 ? 3 AC1 4 CYS A 32 ? CYS A 175 . ? 1_555 ? 4 AC1 4 CYS A 65 ? CYS A 208 . ? 1_555 ? 5 AC2 4 CYS A 38 ? CYS A 181 . ? 1_555 ? 6 AC2 4 CYS A 41 ? CYS A 184 . ? 1_555 ? 7 AC2 4 CYS A 44 ? CYS A 187 . ? 1_555 ? 8 AC2 4 CYS A 60 ? CYS A 203 . ? 1_555 ? 9 AC3 2 HIS A 40 ? HIS A 183 . ? 3_555 ? 10 AC3 2 LYS A 74 ? LYS A 217 . ? 1_555 ? 11 AC4 3 ALA A 23 ? ALA A 166 . ? 1_555 ? 12 AC4 3 ARG A 24 ? ARG A 167 . ? 1_555 ? 13 AC4 3 MET A 25 ? MET A 168 . ? 1_555 ? 14 AC5 4 DG C 10 ? DG C 10 . ? 4_555 ? 15 AC5 4 DG C 11 ? DG C 11 . ? 4_555 ? 16 AC5 4 HOH K . ? HOH C 21 . ? 1_555 ? 17 AC5 4 HOH K . ? HOH C 26 . ? 4_555 ? # _database_PDB_matrix.entry_id 3QMI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QMI _atom_sites.fract_transf_matrix[1][1] 0.032654 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013332 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007942 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 144 ? ? ? A . n A 1 2 HIS 2 145 ? ? ? A . n A 1 3 HIS 3 146 ? ? ? A . n A 1 4 HIS 4 147 ? ? ? A . n A 1 5 HIS 5 148 ? ? ? A . n A 1 6 HIS 6 149 ? ? ? A . n A 1 7 HIS 7 150 ? ? ? A . n A 1 8 SER 8 151 ? ? ? A . n A 1 9 SER 9 152 ? ? ? A . n A 1 10 ARG 10 153 ? ? ? A . n A 1 11 GLU 11 154 ? ? ? A . n A 1 12 ASN 12 155 ? ? ? A . n A 1 13 LEU 13 156 ? ? ? A . n A 1 14 TYR 14 157 ? ? ? A . n A 1 15 PHE 15 158 ? ? ? A . n A 1 16 GLN 16 159 ? ? ? A . n A 1 17 GLY 17 160 ? ? ? A . n A 1 18 GLN 18 161 ? ? ? A . n A 1 19 ILE 19 162 ? ? ? A . n A 1 20 LYS 20 163 ? ? ? A . n A 1 21 ARG 21 164 ? ? ? A . n A 1 22 SER 22 165 ? ? ? A . n A 1 23 ALA 23 166 166 ALA ALA A . n A 1 24 ARG 24 167 167 ARG ARG A . n A 1 25 MET 25 168 168 MET MET A . n A 1 26 CYS 26 169 169 CYS CYS A . n A 1 27 GLY 27 170 170 GLY GLY A . n A 1 28 GLU 28 171 171 GLU GLU A . n A 1 29 CYS 29 172 172 CYS CYS A . n A 1 30 GLU 30 173 173 GLU GLU A . n A 1 31 ALA 31 174 174 ALA ALA A . n A 1 32 CYS 32 175 175 CYS CYS A . n A 1 33 ARG 33 176 176 ARG ARG A . n A 1 34 ARG 34 177 177 ARG ARG A . n A 1 35 THR 35 178 178 THR THR A . n A 1 36 GLU 36 179 179 GLU GLU A . n A 1 37 ASP 37 180 180 ASP ASP A . n A 1 38 CYS 38 181 181 CYS CYS A . n A 1 39 GLY 39 182 182 GLY GLY A . n A 1 40 HIS 40 183 183 HIS HIS A . n A 1 41 CYS 41 184 184 CYS CYS A . n A 1 42 ASP 42 185 185 ASP ASP A . n A 1 43 PHE 43 186 186 PHE PHE A . n A 1 44 CYS 44 187 187 CYS CYS A . n A 1 45 ARG 45 188 188 ARG ARG A . n A 1 46 ASP 46 189 189 ASP ASP A . n A 1 47 MET 47 190 190 MET MET A . n A 1 48 LYS 48 191 191 LYS LYS A . n A 1 49 LYS 49 192 192 LYS LYS A . n A 1 50 PHE 50 193 193 PHE PHE A . n A 1 51 GLY 51 194 194 GLY GLY A . n A 1 52 GLY 52 195 195 GLY GLY A . n A 1 53 PRO 53 196 196 PRO PRO A . n A 1 54 ASN 54 197 197 ASN ASN A . n A 1 55 LYS 55 198 198 LYS LYS A . n A 1 56 ILE 56 199 199 ILE ILE A . n A 1 57 ARG 57 200 200 ARG ARG A . n A 1 58 GLN 58 201 201 GLN GLN A . n A 1 59 LYS 59 202 202 LYS LYS A . n A 1 60 CYS 60 203 203 CYS CYS A . n A 1 61 ARG 61 204 204 ARG ARG A . n A 1 62 LEU 62 205 205 LEU LEU A . n A 1 63 ARG 63 206 206 ARG ARG A . n A 1 64 GLN 64 207 207 GLN GLN A . n A 1 65 CYS 65 208 208 CYS CYS A . n A 1 66 GLN 66 209 209 GLN GLN A . n A 1 67 LEU 67 210 210 LEU LEU A . n A 1 68 ARG 68 211 211 ARG ARG A . n A 1 69 ALA 69 212 212 ALA ALA A . n A 1 70 ARG 70 213 213 ARG ARG A . n A 1 71 GLU 71 214 214 GLU GLU A . n A 1 72 SER 72 215 215 SER SER A . n A 1 73 TYR 73 216 216 TYR TYR A . n A 1 74 LYS 74 217 217 LYS LYS A . n A 1 75 TYR 75 218 ? ? ? A . n A 1 76 PHE 76 219 ? ? ? A . n A 1 77 PRO 77 220 ? ? ? A . n A 1 78 SER 78 221 ? ? ? A . n A 1 79 SER 79 222 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DC 12 12 12 DC DC B . n C 2 1 DG 1 1 1 DG DG C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DC 3 3 3 DC DC C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 DC 6 6 6 DC DC C . n C 2 7 DG 7 7 7 DG DG C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DG 10 10 10 DG DG C . n C 2 11 DG 11 11 11 DG DG C . n C 2 12 DC 12 12 12 DC DC C . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN 1 300 300 ZN ZN A . E 3 ZN 1 301 301 ZN ZN A . F 4 PEG 1 1 1 PEG PEG A . G 4 PEG 1 2 2 PEG PEG A . H 5 PO4 1 13 13 PO4 PO4 C . I 6 HOH 1 3 3 HOH HOH A . I 6 HOH 2 4 4 HOH HOH A . I 6 HOH 3 5 5 HOH HOH A . I 6 HOH 4 6 6 HOH HOH A . I 6 HOH 5 7 7 HOH HOH A . I 6 HOH 6 8 8 HOH HOH A . I 6 HOH 7 9 9 HOH HOH A . I 6 HOH 8 10 10 HOH HOH A . I 6 HOH 9 13 13 HOH HOH A . I 6 HOH 10 15 15 HOH HOH A . I 6 HOH 11 16 16 HOH HOH A . I 6 HOH 12 18 18 HOH HOH A . I 6 HOH 13 19 19 HOH HOH A . I 6 HOH 14 20 20 HOH HOH A . I 6 HOH 15 23 23 HOH HOH A . I 6 HOH 16 25 25 HOH HOH A . I 6 HOH 17 28 28 HOH HOH A . I 6 HOH 18 29 29 HOH HOH A . I 6 HOH 19 31 31 HOH HOH A . I 6 HOH 20 32 32 HOH HOH A . I 6 HOH 21 33 33 HOH HOH A . I 6 HOH 22 223 223 HOH HOH A . J 6 HOH 1 13 13 HOH HOH B . J 6 HOH 2 14 14 HOH HOH B . J 6 HOH 3 24 24 HOH HOH B . J 6 HOH 4 27 27 HOH HOH B . J 6 HOH 5 30 30 HOH HOH B . K 6 HOH 1 15 15 HOH HOH C . K 6 HOH 2 16 16 HOH HOH C . K 6 HOH 3 17 17 HOH HOH C . K 6 HOH 4 21 21 HOH HOH C . K 6 HOH 5 22 22 HOH HOH C . K 6 HOH 6 26 26 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2900 ? 1 MORE -26 ? 1 'SSA (A^2)' 7330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 26 ? A CYS 169 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 29 ? A CYS 172 ? 1_555 109.3 ? 2 SG ? A CYS 26 ? A CYS 169 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 32 ? A CYS 175 ? 1_555 116.7 ? 3 SG ? A CYS 29 ? A CYS 172 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 32 ? A CYS 175 ? 1_555 107.0 ? 4 SG ? A CYS 26 ? A CYS 169 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 65 ? A CYS 208 ? 1_555 102.7 ? 5 SG ? A CYS 29 ? A CYS 172 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 65 ? A CYS 208 ? 1_555 118.7 ? 6 SG ? A CYS 32 ? A CYS 175 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 65 ? A CYS 208 ? 1_555 102.8 ? 7 SG ? A CYS 38 ? A CYS 181 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 41 ? A CYS 184 ? 1_555 108.1 ? 8 SG ? A CYS 38 ? A CYS 181 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 44 ? A CYS 187 ? 1_555 118.2 ? 9 SG ? A CYS 41 ? A CYS 184 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 44 ? A CYS 187 ? 1_555 103.5 ? 10 SG ? A CYS 38 ? A CYS 181 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 60 ? A CYS 203 ? 1_555 106.4 ? 11 SG ? A CYS 41 ? A CYS 184 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 60 ? A CYS 203 ? 1_555 119.9 ? 12 SG ? A CYS 44 ? A CYS 187 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 60 ? A CYS 203 ? 1_555 101.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.value' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_ref_seq_dif.details' 16 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -4.1023 -11.0135 21.8801 0.0237 0.2133 0.0568 -0.0341 -0.0162 0.0332 3.3128 1.5018 6.2860 0.2027 -0.4025 0.7670 0.0267 -0.1913 -0.0438 0.0494 0.1271 0.0274 0.2696 -0.0638 -0.1538 'X-RAY DIFFRACTION' 2 ? refined -3.1161 -12.6201 7.6954 0.2457 0.2084 0.1255 -0.0432 -0.0072 0.0017 2.9102 5.7273 1.6208 2.4324 -0.5577 -1.8378 0.1374 -0.1652 -0.1359 -0.5314 -0.2705 -0.1659 -0.0224 -0.1112 0.1331 'X-RAY DIFFRACTION' 3 ? refined -4.1469 -11.8690 8.4577 0.1487 0.1585 0.0441 -0.1012 -0.0210 -0.0037 1.5039 9.0857 1.0101 1.5769 -0.4883 -0.3138 0.2062 0.0148 -0.0048 0.0364 -0.2703 0.0767 0.0911 -0.0865 0.0641 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -10 ? ? A 9999 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B -10 ? ? B 9999 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C -10 ? ? C 9999 ? ? ? ? # _software.name REFMAC _software.classification refinement _software.version 5.5.0110 _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 110.87 108.30 2.57 0.30 N 2 1 N3 B DT 8 ? ? C4 B DT 8 ? ? O4 B DT 8 ? ? 123.56 119.90 3.66 0.60 N 3 1 C5 B DT 8 ? ? C4 B DT 8 ? ? O4 B DT 8 ? ? 120.33 124.90 -4.57 0.70 N 4 1 "C3'" C DC 3 ? ? "C2'" C DC 3 ? ? "C1'" C DC 3 ? ? 96.74 102.40 -5.66 0.80 N 5 1 "O4'" C DC 3 ? ? "C1'" C DC 3 ? ? N1 C DC 3 ? ? 111.03 108.30 2.73 0.30 N 6 1 "C3'" C DT 9 ? ? "C2'" C DT 9 ? ? "C1'" C DT 9 ? ? 97.05 102.40 -5.35 0.80 N 7 1 "O4'" C DC 12 ? ? "C4'" C DC 12 ? ? "C3'" C DC 12 ? ? 101.84 104.50 -2.66 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 171 ? ? -141.07 14.44 2 1 CYS A 203 ? ? -33.56 135.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 173 ? CG ? A GLU 30 CG 2 1 Y 1 A GLU 173 ? CD ? A GLU 30 CD 3 1 Y 1 A GLU 173 ? OE1 ? A GLU 30 OE1 4 1 Y 1 A GLU 173 ? OE2 ? A GLU 30 OE2 5 1 Y 1 A ARG 188 ? NE ? A ARG 45 NE 6 1 Y 1 A ARG 188 ? CZ ? A ARG 45 CZ 7 1 Y 1 A ARG 188 ? NH1 ? A ARG 45 NH1 8 1 Y 1 A ARG 188 ? NH2 ? A ARG 45 NH2 9 1 Y 1 A LYS 191 ? CG ? A LYS 48 CG 10 1 Y 1 A LYS 191 ? CD ? A LYS 48 CD 11 1 Y 1 A LYS 191 ? CE ? A LYS 48 CE 12 1 Y 1 A LYS 191 ? NZ ? A LYS 48 NZ 13 1 Y 1 A LYS 198 ? CG ? A LYS 55 CG 14 1 Y 1 A LYS 198 ? CD ? A LYS 55 CD 15 1 Y 1 A LYS 198 ? CE ? A LYS 55 CE 16 1 Y 1 A LYS 198 ? NZ ? A LYS 55 NZ 17 1 Y 1 A GLU 214 ? CG ? A GLU 71 CG 18 1 Y 1 A GLU 214 ? CD ? A GLU 71 CD 19 1 Y 1 A GLU 214 ? OE1 ? A GLU 71 OE1 20 1 Y 1 A GLU 214 ? OE2 ? A GLU 71 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 144 ? A MET 1 2 1 Y 1 A HIS 145 ? A HIS 2 3 1 Y 1 A HIS 146 ? A HIS 3 4 1 Y 1 A HIS 147 ? A HIS 4 5 1 Y 1 A HIS 148 ? A HIS 5 6 1 Y 1 A HIS 149 ? A HIS 6 7 1 Y 1 A HIS 150 ? A HIS 7 8 1 Y 1 A SER 151 ? A SER 8 9 1 Y 1 A SER 152 ? A SER 9 10 1 Y 1 A ARG 153 ? A ARG 10 11 1 Y 1 A GLU 154 ? A GLU 11 12 1 Y 1 A ASN 155 ? A ASN 12 13 1 Y 1 A LEU 156 ? A LEU 13 14 1 Y 1 A TYR 157 ? A TYR 14 15 1 Y 1 A PHE 158 ? A PHE 15 16 1 Y 1 A GLN 159 ? A GLN 16 17 1 Y 1 A GLY 160 ? A GLY 17 18 1 Y 1 A GLN 161 ? A GLN 18 19 1 Y 1 A ILE 162 ? A ILE 19 20 1 Y 1 A LYS 163 ? A LYS 20 21 1 Y 1 A ARG 164 ? A ARG 21 22 1 Y 1 A SER 165 ? A SER 22 23 1 Y 1 A TYR 218 ? A TYR 75 24 1 Y 1 A PHE 219 ? A PHE 76 25 1 Y 1 A PRO 220 ? A PRO 77 26 1 Y 1 A SER 221 ? A SER 78 27 1 Y 1 A SER 222 ? A SER 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PEG C1 C N N 393 PEG O1 O N N 394 PEG C2 C N N 395 PEG O2 O N N 396 PEG C3 C N N 397 PEG C4 C N N 398 PEG O4 O N N 399 PEG H11 H N N 400 PEG H12 H N N 401 PEG HO1 H N N 402 PEG H21 H N N 403 PEG H22 H N N 404 PEG H31 H N N 405 PEG H32 H N N 406 PEG H41 H N N 407 PEG H42 H N N 408 PEG HO4 H N N 409 PHE N N N N 410 PHE CA C N S 411 PHE C C N N 412 PHE O O N N 413 PHE CB C N N 414 PHE CG C Y N 415 PHE CD1 C Y N 416 PHE CD2 C Y N 417 PHE CE1 C Y N 418 PHE CE2 C Y N 419 PHE CZ C Y N 420 PHE OXT O N N 421 PHE H H N N 422 PHE H2 H N N 423 PHE HA H N N 424 PHE HB2 H N N 425 PHE HB3 H N N 426 PHE HD1 H N N 427 PHE HD2 H N N 428 PHE HE1 H N N 429 PHE HE2 H N N 430 PHE HZ H N N 431 PHE HXT H N N 432 PO4 P P N N 433 PO4 O1 O N N 434 PO4 O2 O N N 435 PO4 O3 O N N 436 PO4 O4 O N N 437 PRO N N N N 438 PRO CA C N S 439 PRO C C N N 440 PRO O O N N 441 PRO CB C N N 442 PRO CG C N N 443 PRO CD C N N 444 PRO OXT O N N 445 PRO H H N N 446 PRO HA H N N 447 PRO HB2 H N N 448 PRO HB3 H N N 449 PRO HG2 H N N 450 PRO HG3 H N N 451 PRO HD2 H N N 452 PRO HD3 H N N 453 PRO HXT H N N 454 SER N N N N 455 SER CA C N S 456 SER C C N N 457 SER O O N N 458 SER CB C N N 459 SER OG O N N 460 SER OXT O N N 461 SER H H N N 462 SER H2 H N N 463 SER HA H N N 464 SER HB2 H N N 465 SER HB3 H N N 466 SER HG H N N 467 SER HXT H N N 468 THR N N N N 469 THR CA C N S 470 THR C C N N 471 THR O O N N 472 THR CB C N R 473 THR OG1 O N N 474 THR CG2 C N N 475 THR OXT O N N 476 THR H H N N 477 THR H2 H N N 478 THR HA H N N 479 THR HB H N N 480 THR HG1 H N N 481 THR HG21 H N N 482 THR HG22 H N N 483 THR HG23 H N N 484 THR HXT H N N 485 TYR N N N N 486 TYR CA C N S 487 TYR C C N N 488 TYR O O N N 489 TYR CB C N N 490 TYR CG C Y N 491 TYR CD1 C Y N 492 TYR CD2 C Y N 493 TYR CE1 C Y N 494 TYR CE2 C Y N 495 TYR CZ C Y N 496 TYR OH O N N 497 TYR OXT O N N 498 TYR H H N N 499 TYR H2 H N N 500 TYR HA H N N 501 TYR HB2 H N N 502 TYR HB3 H N N 503 TYR HD1 H N N 504 TYR HD2 H N N 505 TYR HE1 H N N 506 TYR HE2 H N N 507 TYR HH H N N 508 TYR HXT H N N 509 ZN ZN ZN N N 510 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PEG C1 O1 sing N N 386 PEG C1 C2 sing N N 387 PEG C1 H11 sing N N 388 PEG C1 H12 sing N N 389 PEG O1 HO1 sing N N 390 PEG C2 O2 sing N N 391 PEG C2 H21 sing N N 392 PEG C2 H22 sing N N 393 PEG O2 C3 sing N N 394 PEG C3 C4 sing N N 395 PEG C3 H31 sing N N 396 PEG C3 H32 sing N N 397 PEG C4 O4 sing N N 398 PEG C4 H41 sing N N 399 PEG C4 H42 sing N N 400 PEG O4 HO4 sing N N 401 PHE N CA sing N N 402 PHE N H sing N N 403 PHE N H2 sing N N 404 PHE CA C sing N N 405 PHE CA CB sing N N 406 PHE CA HA sing N N 407 PHE C O doub N N 408 PHE C OXT sing N N 409 PHE CB CG sing N N 410 PHE CB HB2 sing N N 411 PHE CB HB3 sing N N 412 PHE CG CD1 doub Y N 413 PHE CG CD2 sing Y N 414 PHE CD1 CE1 sing Y N 415 PHE CD1 HD1 sing N N 416 PHE CD2 CE2 doub Y N 417 PHE CD2 HD2 sing N N 418 PHE CE1 CZ doub Y N 419 PHE CE1 HE1 sing N N 420 PHE CE2 CZ sing Y N 421 PHE CE2 HE2 sing N N 422 PHE CZ HZ sing N N 423 PHE OXT HXT sing N N 424 PO4 P O1 doub N N 425 PO4 P O2 sing N N 426 PO4 P O3 sing N N 427 PO4 P O4 sing N N 428 PRO N CA sing N N 429 PRO N CD sing N N 430 PRO N H sing N N 431 PRO CA C sing N N 432 PRO CA CB sing N N 433 PRO CA HA sing N N 434 PRO C O doub N N 435 PRO C OXT sing N N 436 PRO CB CG sing N N 437 PRO CB HB2 sing N N 438 PRO CB HB3 sing N N 439 PRO CG CD sing N N 440 PRO CG HG2 sing N N 441 PRO CG HG3 sing N N 442 PRO CD HD2 sing N N 443 PRO CD HD3 sing N N 444 PRO OXT HXT sing N N 445 SER N CA sing N N 446 SER N H sing N N 447 SER N H2 sing N N 448 SER CA C sing N N 449 SER CA CB sing N N 450 SER CA HA sing N N 451 SER C O doub N N 452 SER C OXT sing N N 453 SER CB OG sing N N 454 SER CB HB2 sing N N 455 SER CB HB3 sing N N 456 SER OG HG sing N N 457 SER OXT HXT sing N N 458 THR N CA sing N N 459 THR N H sing N N 460 THR N H2 sing N N 461 THR CA C sing N N 462 THR CA CB sing N N 463 THR CA HA sing N N 464 THR C O doub N N 465 THR C OXT sing N N 466 THR CB OG1 sing N N 467 THR CB CG2 sing N N 468 THR CB HB sing N N 469 THR OG1 HG1 sing N N 470 THR CG2 HG21 sing N N 471 THR CG2 HG22 sing N N 472 THR CG2 HG23 sing N N 473 THR OXT HXT sing N N 474 TYR N CA sing N N 475 TYR N H sing N N 476 TYR N H2 sing N N 477 TYR CA C sing N N 478 TYR CA CB sing N N 479 TYR CA HA sing N N 480 TYR C O doub N N 481 TYR C OXT sing N N 482 TYR CB CG sing N N 483 TYR CB HB2 sing N N 484 TYR CB HB3 sing N N 485 TYR CG CD1 doub Y N 486 TYR CG CD2 sing Y N 487 TYR CD1 CE1 sing Y N 488 TYR CD1 HD1 sing N N 489 TYR CD2 CE2 doub Y N 490 TYR CD2 HD2 sing N N 491 TYR CE1 CZ doub Y N 492 TYR CE1 HE1 sing N N 493 TYR CE2 CZ sing Y N 494 TYR CE2 HE2 sing N N 495 TYR CZ OH sing N N 496 TYR OH HH sing N N 497 TYR OXT HXT sing N N 498 # _ndb_struct_conf_na.entry_id 3QMI _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 12 1_555 -0.595 -0.209 0.053 3.735 -3.750 0.747 1 B_DG1:DC12_C B 1 ? C 12 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 0.367 -0.246 0.204 -2.586 -10.144 -2.759 2 B_DC2:DG11_C B 2 ? C 11 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.448 -0.171 0.019 -3.831 -6.543 3.179 3 B_DC3:DG10_C B 3 ? C 10 ? 19 1 1 B DA 4 1_555 C DT 9 1_555 0.013 -0.123 0.076 -0.422 -1.399 1.017 4 B_DA4:DT9_C B 4 ? C 9 ? 20 1 1 B DA 5 1_555 C DT 8 1_555 0.133 -0.156 0.247 6.609 -6.082 5.079 5 B_DA5:DT8_C B 5 ? C 8 ? 20 1 1 B DC 6 1_555 C DG 7 1_555 0.410 -0.122 0.196 -2.281 -19.304 2.438 6 B_DC6:DG7_C B 6 ? C 7 ? 19 1 1 B DG 7 1_555 C DC 6 1_555 -0.199 -0.146 -0.109 -4.085 0.578 -1.857 7 B_DG7:DC6_C B 7 ? C 6 ? 19 1 1 B DT 8 1_555 C DA 5 1_555 -0.117 -0.191 0.036 1.649 -10.604 -0.423 8 B_DT8:DA5_C B 8 ? C 5 ? 20 1 1 B DT 9 1_555 C DA 4 1_555 -0.163 -0.228 -0.155 1.415 -13.804 5.043 9 B_DT9:DA4_C B 9 ? C 4 ? 20 1 1 B DG 10 1_555 C DC 3 1_555 -0.351 -0.133 0.135 0.407 -2.786 2.145 10 B_DG10:DC3_C B 10 ? C 3 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.263 -0.140 0.198 5.382 -5.717 0.369 11 B_DG11:DC2_C B 11 ? C 2 ? 19 1 1 B DC 12 1_555 C DG 1 1_555 0.287 -0.170 -0.073 -3.340 -4.164 2.390 12 B_DC12:DG1_C B 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 12 1_555 B DC 2 1_555 C DG 11 1_555 -0.794 -0.368 3.440 -2.524 -0.208 38.814 -0.526 0.868 3.484 -0.312 3.792 38.894 1 BB_DG1DC2:DG11DC12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 -0.127 -0.149 3.268 1.926 6.462 29.897 -1.550 0.618 3.153 12.330 -3.674 30.631 2 BB_DC2DC3:DG10DG11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DC 3 1_555 C DG 10 1_555 B DA 4 1_555 C DT 9 1_555 -0.089 2.362 3.270 -2.476 -4.771 46.848 3.330 -0.084 3.030 -5.977 3.102 47.138 3 BB_DC3DA4:DT9DG10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DA 4 1_555 C DT 9 1_555 B DA 5 1_555 C DT 8 1_555 0.625 0.628 3.329 -2.875 9.466 23.824 -1.361 -2.243 3.240 21.767 6.611 25.769 4 BB_DA4DA5:DT8DT9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DA 5 1_555 C DT 8 1_555 B DC 6 1_555 C DG 7 1_555 -0.916 -0.050 3.499 -1.318 -3.177 38.350 0.348 1.214 3.520 -4.825 2.002 38.499 5 BB_DA5DC6:DG7DT8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 B DC 6 1_555 C DG 7 1_555 B DG 7 1_555 C DC 6 1_555 0.438 0.862 3.438 3.254 2.610 40.715 0.929 -0.248 3.507 3.739 -4.662 40.919 6 BB_DC6DG7:DC6DG7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 B DG 7 1_555 C DC 6 1_555 B DT 8 1_555 C DA 5 1_555 -0.385 -0.440 3.278 -1.543 3.080 30.587 -1.431 0.424 3.235 5.816 2.913 30.776 7 BB_DG7DT8:DA5DC6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DT 8 1_555 C DA 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.187 -0.337 3.292 1.909 3.461 29.593 -1.373 0.759 3.215 6.739 -3.717 29.850 8 BB_DT8DT9:DA4DA5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DG 10 1_555 C DC 3 1_555 0.206 1.700 3.343 -2.277 -0.268 45.613 2.215 -0.468 3.320 -0.345 2.935 45.667 9 BB_DT9DG10:DC3DA4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DG 10 1_555 C DC 3 1_555 B DG 11 1_555 C DC 2 1_555 -0.269 0.233 3.194 -2.230 5.282 29.618 -0.613 0.070 3.198 10.212 4.311 30.156 10 BB_DG10DG11:DC2DC3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 B DG 11 1_555 C DC 2 1_555 B DC 12 1_555 C DG 1 1_555 0.737 -0.566 3.495 4.236 -0.431 35.379 -0.858 -0.539 3.563 -0.706 -6.940 35.626 11 BB_DG11DC12:DG1DC2_CC B 11 ? C 2 ? B 12 ? C 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'PHOSPHATE ION' PO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3QMB _pdbx_initial_refinement_model.details ? #