HEADER ENDOCYTOSIS 08-FEB-11 3QNI TITLE CRYSTAL STRUCTURE OF HUMAN PACSIN 1 F-BAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS COMPND 3 PROTEIN 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: F-BAR DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PACSIN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS F-BAR DOMAIN, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR G.MENG,X.BAI,X.ZHENG REVDAT 2 20-MAR-24 3QNI 1 REMARK LINK REVDAT 1 10-AUG-11 3QNI 0 JRNL AUTH G.MENG,X.BAI,X.ZHENG JRNL TITL CRYSTAL STRUCTURE OF HUMAN PACSIN 1 F-BAR DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 21232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.94000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -9.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.387 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.281 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.107 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4554 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6104 ; 1.650 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 536 ; 6.287 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;38.485 ;25.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 901 ;23.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;23.178 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3446 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2682 ; 0.555 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4280 ; 1.077 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1872 ; 1.889 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1824 ; 3.168 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4554 ; 1.187 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 201 ; 5.280 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4466 ; 1.656 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4211 6.1864 40.7424 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1181 REMARK 3 T33: 0.2155 T12: -0.0355 REMARK 3 T13: 0.0482 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.8126 L22: 0.7247 REMARK 3 L33: 6.7776 L12: 0.2197 REMARK 3 L13: 1.2616 L23: 1.4571 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: -0.2393 S13: 0.0117 REMARK 3 S21: 0.0927 S22: -0.0254 S23: 0.0385 REMARK 3 S31: 0.1017 S32: -0.0965 S33: 0.0682 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5591 -6.6527 2.3803 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.0567 REMARK 3 T33: 0.2421 T12: -0.0512 REMARK 3 T13: 0.0066 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.8801 L22: 0.9922 REMARK 3 L33: 8.4191 L12: 0.2716 REMARK 3 L13: 1.5715 L23: 2.3865 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0960 S13: 0.0004 REMARK 3 S21: -0.1377 S22: -0.0725 S23: 0.1005 REMARK 3 S31: -0.0925 S32: -0.0301 S33: 0.0680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.94950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.94950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 TYR A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 THR A 172 REMARK 465 ARG A 173 REMARK 465 GLU A 174 REMARK 465 MET A 175 REMARK 465 ASN A 176 REMARK 465 SER A 177 REMARK 465 LYS A 178 REMARK 465 THR A 179 REMARK 465 GLU A 180 REMARK 465 GLN A 181 REMARK 465 SER A 182 REMARK 465 VAL A 183 REMARK 465 THR A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 GLN A 187 REMARK 465 GLN A 188 REMARK 465 LYS A 189 REMARK 465 LYS A 190 REMARK 465 LEU A 191 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 TYR B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 GLU B 13 REMARK 465 GLU B 14 REMARK 465 THR B 15 REMARK 465 THR B 172 REMARK 465 ARG B 173 REMARK 465 GLU B 174 REMARK 465 MET B 175 REMARK 465 ASN B 176 REMARK 465 SER B 177 REMARK 465 LYS B 178 REMARK 465 THR B 179 REMARK 465 GLU B 180 REMARK 465 GLN B 181 REMARK 465 SER B 182 REMARK 465 VAL B 183 REMARK 465 THR B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 GLN B 187 REMARK 465 GLN B 188 REMARK 465 LYS B 189 REMARK 465 LYS B 190 REMARK 465 LEU B 191 REMARK 465 GLN B 192 REMARK 465 ASP B 193 REMARK 465 LYS B 194 REMARK 465 VAL B 195 REMARK 465 ASN B 306 REMARK 465 PRO B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 15 OG1 CG2 REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 TRP A 305 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 305 CZ3 CH2 REMARK 470 ASN A 306 CG OD1 ND2 REMARK 470 PRO A 307 CG CD REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 118 O HOH A 333 1.92 REMARK 500 O HOH B 327 O HOH B 396 1.92 REMARK 500 CD1 LEU B 169 O HOH B 309 1.96 REMARK 500 O HOH A 320 O HOH A 337 2.02 REMARK 500 NH1 ARG A 37 O HOH A 359 2.04 REMARK 500 CD1 TYR A 264 CB ALA B 259 2.13 REMARK 500 OE2 GLU A 90 NH2 ARG B 49 2.15 REMARK 500 ND2 ASN B 261 N SER B 263 2.16 REMARK 500 OE1 GLU B 152 O HOH B 349 2.17 REMARK 500 O LYS B 168 O HOH B 398 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU A 80 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 VAL A 195 CB - CA - C ANGL. DEV. = -25.8 DEGREES REMARK 500 LEU B 169 N - CA - CB ANGL. DEV. = -20.0 DEGREES REMARK 500 GLU B 260 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 0.70 -66.38 REMARK 500 LEU A 162 -70.86 -50.14 REMARK 500 VAL A 195 32.51 -82.62 REMARK 500 VAL A 216 -70.19 -51.10 REMARK 500 ALA A 259 5.23 -67.84 REMARK 500 GLU A 260 12.50 -65.41 REMARK 500 SER A 291 -9.42 -144.65 REMARK 500 PHE A 302 138.34 -39.16 REMARK 500 ASN A 306 -129.93 52.91 REMARK 500 PHE B 19 -36.69 -37.58 REMARK 500 GLU B 108 -73.48 -103.56 REMARK 500 GLN B 124 -125.59 61.82 REMARK 500 MET B 126 -122.85 59.96 REMARK 500 GLU B 260 -64.31 -141.90 REMARK 500 SER B 291 -16.08 -146.70 REMARK 500 GLN B 301 -165.19 -128.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 71 O REMARK 620 2 GLU A 72 O 75.8 REMARK 620 3 GLY A 74 O 91.6 72.1 REMARK 620 4 GLN A 76 O 99.3 167.4 120.0 REMARK 620 5 GLU A 81 OE1 79.0 97.7 167.8 69.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 71 O REMARK 620 2 GLU B 72 O 69.5 REMARK 620 3 GLY B 74 O 90.8 86.2 REMARK 620 4 GLN B 76 O 105.6 174.7 92.1 REMARK 620 5 GLU B 81 OE1 76.7 97.4 164.6 83.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 400 DBREF 3QNI A 1 307 UNP Q9BY11 PACN1_HUMAN 1 307 DBREF 3QNI B 1 307 UNP Q9BY11 PACN1_HUMAN 1 307 SEQRES 1 A 307 MET SER SER SER TYR ASP GLU ALA SER LEU ALA PRO GLU SEQRES 2 A 307 GLU THR THR ASP SER PHE TRP GLU VAL GLY ASN TYR LYS SEQRES 3 A 307 ARG THR VAL LYS ARG ILE ASP ASP GLY HIS ARG LEU CYS SEQRES 4 A 307 ASN ASP LEU MET ASN CYS VAL GLN GLU ARG ALA LYS ILE SEQRES 5 A 307 GLU LYS ALA TYR GLY GLN GLN LEU THR ASP TRP ALA LYS SEQRES 6 A 307 ARG TRP ARG GLN LEU ILE GLU LYS GLY PRO GLN TYR GLY SEQRES 7 A 307 SER LEU GLU ARG ALA TRP GLY ALA ILE MET THR GLU ALA SEQRES 8 A 307 ASP LYS VAL SER GLU LEU HIS GLN GLU VAL LYS ASN ASN SEQRES 9 A 307 LEU LEU ASN GLU ASP LEU GLU LYS VAL LYS ASN TRP GLN SEQRES 10 A 307 LYS ASP ALA TYR HIS LYS GLN ILE MET GLY GLY PHE LYS SEQRES 11 A 307 GLU THR LYS GLU ALA GLU ASP GLY PHE ARG LYS ALA GLN SEQRES 12 A 307 LYS PRO TRP ALA LYS LYS MET LYS GLU LEU GLU ALA ALA SEQRES 13 A 307 LYS LYS ALA TYR HIS LEU ALA CYS LYS GLU GLU LYS LEU SEQRES 14 A 307 ALA MET THR ARG GLU MET ASN SER LYS THR GLU GLN SER SEQRES 15 A 307 VAL THR PRO GLU GLN GLN LYS LYS LEU GLN ASP LYS VAL SEQRES 16 A 307 ASP LYS CYS LYS GLN ASP VAL GLN LYS THR GLN GLU LYS SEQRES 17 A 307 TYR GLU LYS VAL LEU GLU ASP VAL GLY LYS THR THR PRO SEQRES 18 A 307 GLN TYR MET GLU ASN MET GLU GLN VAL PHE GLU GLN CYS SEQRES 19 A 307 GLN GLN PHE GLU GLU LYS ARG LEU VAL PHE LEU LYS GLU SEQRES 20 A 307 VAL LEU LEU ASP ILE LYS ARG HIS LEU ASN LEU ALA GLU SEQRES 21 A 307 ASN SER SER TYR ILE HIS VAL TYR ARG GLU LEU GLU GLN SEQRES 22 A 307 ALA ILE ARG GLY ALA ASP ALA GLN GLU ASP LEU ARG TRP SEQRES 23 A 307 PHE ARG SER THR SER GLY PRO GLY MET PRO MET ASN TRP SEQRES 24 A 307 PRO GLN PHE GLU GLU TRP ASN PRO SEQRES 1 B 307 MET SER SER SER TYR ASP GLU ALA SER LEU ALA PRO GLU SEQRES 2 B 307 GLU THR THR ASP SER PHE TRP GLU VAL GLY ASN TYR LYS SEQRES 3 B 307 ARG THR VAL LYS ARG ILE ASP ASP GLY HIS ARG LEU CYS SEQRES 4 B 307 ASN ASP LEU MET ASN CYS VAL GLN GLU ARG ALA LYS ILE SEQRES 5 B 307 GLU LYS ALA TYR GLY GLN GLN LEU THR ASP TRP ALA LYS SEQRES 6 B 307 ARG TRP ARG GLN LEU ILE GLU LYS GLY PRO GLN TYR GLY SEQRES 7 B 307 SER LEU GLU ARG ALA TRP GLY ALA ILE MET THR GLU ALA SEQRES 8 B 307 ASP LYS VAL SER GLU LEU HIS GLN GLU VAL LYS ASN ASN SEQRES 9 B 307 LEU LEU ASN GLU ASP LEU GLU LYS VAL LYS ASN TRP GLN SEQRES 10 B 307 LYS ASP ALA TYR HIS LYS GLN ILE MET GLY GLY PHE LYS SEQRES 11 B 307 GLU THR LYS GLU ALA GLU ASP GLY PHE ARG LYS ALA GLN SEQRES 12 B 307 LYS PRO TRP ALA LYS LYS MET LYS GLU LEU GLU ALA ALA SEQRES 13 B 307 LYS LYS ALA TYR HIS LEU ALA CYS LYS GLU GLU LYS LEU SEQRES 14 B 307 ALA MET THR ARG GLU MET ASN SER LYS THR GLU GLN SER SEQRES 15 B 307 VAL THR PRO GLU GLN GLN LYS LYS LEU GLN ASP LYS VAL SEQRES 16 B 307 ASP LYS CYS LYS GLN ASP VAL GLN LYS THR GLN GLU LYS SEQRES 17 B 307 TYR GLU LYS VAL LEU GLU ASP VAL GLY LYS THR THR PRO SEQRES 18 B 307 GLN TYR MET GLU ASN MET GLU GLN VAL PHE GLU GLN CYS SEQRES 19 B 307 GLN GLN PHE GLU GLU LYS ARG LEU VAL PHE LEU LYS GLU SEQRES 20 B 307 VAL LEU LEU ASP ILE LYS ARG HIS LEU ASN LEU ALA GLU SEQRES 21 B 307 ASN SER SER TYR ILE HIS VAL TYR ARG GLU LEU GLU GLN SEQRES 22 B 307 ALA ILE ARG GLY ALA ASP ALA GLN GLU ASP LEU ARG TRP SEQRES 23 B 307 PHE ARG SER THR SER GLY PRO GLY MET PRO MET ASN TRP SEQRES 24 B 307 PRO GLN PHE GLU GLU TRP ASN PRO HET CA A 400 1 HET CA B 400 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *199(H2 O) HELIX 1 1 TYR A 25 GLY A 74 1 50 HELIX 2 2 TYR A 77 GLU A 108 1 32 HELIX 3 3 GLU A 108 TYR A 121 1 14 HELIX 4 4 PHE A 129 LYS A 168 1 40 HELIX 5 5 ASP A 196 LYS A 199 5 4 HELIX 6 6 GLN A 200 ASN A 257 1 58 HELIX 7 7 LEU A 258 GLU A 260 5 3 HELIX 8 8 ASN A 261 GLY A 277 1 17 HELIX 9 9 ASP A 279 GLY A 292 1 14 HELIX 10 10 TYR B 25 GLY B 74 1 50 HELIX 11 11 TYR B 77 GLU B 108 1 32 HELIX 12 12 GLU B 108 TYR B 121 1 14 HELIX 13 13 PHE B 129 HIS B 161 1 33 HELIX 14 14 GLU B 166 MET B 171 1 6 HELIX 15 15 CYS B 198 ASN B 257 1 60 HELIX 16 16 ASN B 261 ALA B 278 1 18 HELIX 17 17 ASP B 279 GLY B 292 1 14 LINK O ILE A 71 CA CA A 400 1555 1555 2.69 LINK O GLU A 72 CA CA A 400 1555 1555 2.83 LINK O GLY A 74 CA CA A 400 1555 1555 2.59 LINK O GLN A 76 CA CA A 400 1555 1555 2.62 LINK OE1 GLU A 81 CA CA A 400 1555 1555 2.33 LINK O ILE B 71 CA CA B 400 1555 1555 2.66 LINK O GLU B 72 CA CA B 400 1555 1555 2.55 LINK O GLY B 74 CA CA B 400 1555 1555 2.48 LINK O GLN B 76 CA CA B 400 1555 1555 2.63 LINK OE1 GLU B 81 CA CA B 400 1555 1555 2.29 CISPEP 1 MET B 126 GLY B 127 0 5.45 SITE 1 AC1 5 ILE A 71 GLU A 72 GLY A 74 GLN A 76 SITE 2 AC1 5 GLU A 81 SITE 1 AC2 5 ILE B 71 GLU B 72 GLY B 74 GLN B 76 SITE 2 AC2 5 GLU B 81 CRYST1 147.899 83.739 86.511 90.00 114.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006761 0.000000 0.003067 0.00000 SCALE2 0.000000 0.011942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012693 0.00000