HEADER HYDROLASE 09-FEB-11 3QNU TITLE CRYSTAL STRUCTURE OF THE CYTOSOLIC DOMAIN OF HUMAN ATLASTIN-1 IN TITLE 2 COMPLEX WITH GDP, HEXAGONAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATLASTIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ATLASTIN ECTO-DOMAIN (UNP RESIDUES 18-447); COMPND 5 SYNONYM: BRAIN-SPECIFIC GTP-BINDING PROTEIN, GTP-BINDING PROTEIN 3, COMPND 6 GBP-3, HGBP3, GUANINE NUCLEOTIDE-BINDING PROTEIN 3, SPASTIC COMPND 7 PARAPLEGIA 3 PROTEIN A; COMPND 8 EC: 3.6.5.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATL1, GBP3, SPG3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS GTPASE, HOMOTYPIC FUSION, RAS-LIKE GTPASE, MEMBRANE FUSION, GDP, GTP, KEYWDS 2 ENDOPALSMIC RETICULUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU REVDAT 4 20-MAR-24 3QNU 1 REMARK SEQADV LINK REVDAT 3 23-MAR-11 3QNU 1 JRNL REVDAT 2 09-MAR-11 3QNU 1 TITLE REVDAT 1 02-MAR-11 3QNU 0 JRNL AUTH X.BIAN,R.W.KLEMM,T.Y.LIU,M.ZHANG,S.SUN,X.SUI,X.LIU, JRNL AUTH 2 T.A.RAPOPORT,J.HU JRNL TITL STRUCTURES OF THE ATLASTIN GTPASE PROVIDE INSIGHT INTO JRNL TITL 2 HOMOTYPIC FUSION OF ENDOPLASMIC RETICULUM MEMBRANES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 3976 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21368113 JRNL DOI 10.1073/PNAS.1101643108 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9701 - 5.0851 1.00 2757 126 0.2352 0.3262 REMARK 3 2 5.0851 - 4.0374 1.00 2591 136 0.2020 0.2528 REMARK 3 3 4.0374 - 3.5274 1.00 2548 156 0.2300 0.2902 REMARK 3 4 3.5274 - 3.2051 1.00 2552 114 0.2508 0.3244 REMARK 3 5 3.2051 - 2.9754 1.00 2499 160 0.2671 0.3328 REMARK 3 6 2.9754 - 2.8000 1.00 2522 131 0.2637 0.3406 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 50.65 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52490 REMARK 3 B22 (A**2) : -1.52490 REMARK 3 B33 (A**2) : -19.70860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3142 REMARK 3 ANGLE : 1.466 4259 REMARK 3 CHIRALITY : 0.094 474 REMARK 3 PLANARITY : 0.005 546 REMARK 3 DIHEDRAL : 21.499 1124 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE REMARK 4 REMARK 4 3QNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9795 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH8.5, 25%(W/V) REMARK 280 PEG1500, 20%(V/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.12933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.56467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.84700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.28233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.41167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.12933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 34.56467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 17.28233 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.84700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 86.41167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 465 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 TRP A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 PHE A 14 REMARK 465 SER A 15 REMARK 465 GLU A 16 REMARK 465 LYS A 17 REMARK 465 THR A 18 REMARK 465 TYR A 19 REMARK 465 GLU A 20 REMARK 465 TRP A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 LYS A 30 REMARK 465 ASN A 245 REMARK 465 GLN A 246 REMARK 465 HIS A 247 REMARK 465 GLU A 248 REMARK 465 GLU A 249 REMARK 465 LEU A 250 REMARK 465 GLN A 251 REMARK 465 ASN A 252 REMARK 465 VAL A 253 REMARK 465 HIS A 435 REMARK 465 ASN A 436 REMARK 465 ASP A 437 REMARK 465 SER A 438 REMARK 465 LYS A 439 REMARK 465 ASN A 440 REMARK 465 ILE A 441 REMARK 465 PHE A 442 REMARK 465 HIS A 443 REMARK 465 ALA A 444 REMARK 465 ALA A 445 REMARK 465 ARG A 446 REMARK 465 THR A 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 PHE A 46 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LEU A 58 CG CD1 CD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 VAL A 62 CG1 CG2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 SER A 96 OG REMARK 470 VAL A 97 CG1 CG2 REMARK 470 TYR A 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 107 CG CD1 CD2 REMARK 470 THR A 108 OG1 CG2 REMARK 470 SER A 116 OG REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 153 OG REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 SER A 155 OG REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 PHE A 205 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 VAL A 242 CG1 CG2 REMARK 470 SER A 243 OG REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 ILE A 257 CG1 CG2 CD1 REMARK 470 SER A 259 OG REMARK 470 ASP A 378 CG OD1 OD2 REMARK 470 LYS A 379 CG CD CE NZ REMARK 470 PHE A 381 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 382 CG CD1 CD2 REMARK 470 LYS A 434 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 179 O ARG A 217 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 84.72 51.61 REMARK 500 ASP A 43 28.17 -76.00 REMARK 500 ARG A 55 2.25 -64.60 REMARK 500 ALA A 61 -31.92 158.48 REMARK 500 GLN A 94 -81.57 -38.60 REMARK 500 SER A 96 168.71 126.34 REMARK 500 VAL A 97 -179.29 66.63 REMARK 500 SER A 116 108.33 -55.49 REMARK 500 ASP A 136 44.94 -81.93 REMARK 500 THR A 150 -59.67 -125.74 REMARK 500 SER A 153 157.36 175.24 REMARK 500 SER A 179 -93.12 -74.57 REMARK 500 GLU A 203 61.42 99.68 REMARK 500 THR A 204 -154.36 -62.35 REMARK 500 GLN A 210 -88.73 -85.42 REMARK 500 LYS A 241 42.02 -74.87 REMARK 500 ASN A 281 76.32 52.56 REMARK 500 ASP A 283 -44.64 76.54 REMARK 500 GLU A 373 -26.95 -35.79 REMARK 500 ILE A 374 70.18 -153.26 REMARK 500 CYS A 375 -12.13 170.64 REMARK 500 PRO A 380 79.24 -25.15 REMARK 500 PHE A 381 30.31 -98.06 REMARK 500 LEU A 382 -157.81 48.02 REMARK 500 ALA A 383 74.52 101.24 REMARK 500 PRO A 384 7.95 -56.74 REMARK 500 ASP A 386 -31.22 70.50 REMARK 500 GLU A 411 -71.49 -27.67 REMARK 500 ILE A 430 24.71 -69.02 REMARK 500 GLN A 431 40.41 -89.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 599 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 81 OG REMARK 620 2 GDP A 593 O3B 79.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 593 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 599 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QOF RELATED DB: PDB DBREF 3QNU A 18 447 UNP Q8WXF7 ATLA1_HUMAN 18 447 SEQADV 3QNU MET A -11 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU HIS A -10 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU HIS A -9 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU HIS A -8 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU HIS A -7 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU HIS A -6 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU HIS A -5 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU GLY A -4 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU SER A -3 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU HIS A -2 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU MET A -1 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ALA A 0 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU SER A 1 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ALA A 2 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU LYS A 3 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ASN A 4 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ARG A 5 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ARG A 6 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ASP A 7 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ARG A 8 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU ASN A 9 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU SER A 10 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU TRP A 11 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU GLY A 12 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU GLY A 13 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU PHE A 14 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU SER A 15 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU GLU A 16 UNP Q8WXF7 EXPRESSION TAG SEQADV 3QNU LYS A 17 UNP Q8WXF7 EXPRESSION TAG SEQRES 1 A 459 MET HIS HIS HIS HIS HIS HIS GLY SER HIS MET ALA SER SEQRES 2 A 459 ALA LYS ASN ARG ARG ASP ARG ASN SER TRP GLY GLY PHE SEQRES 3 A 459 SER GLU LYS THR TYR GLU TRP SER SER GLU GLU GLU GLU SEQRES 4 A 459 PRO VAL LYS LYS ALA GLY PRO VAL GLN VAL LEU ILE VAL SEQRES 5 A 459 LYS ASP ASP HIS SER PHE GLU LEU ASP GLU THR ALA LEU SEQRES 6 A 459 ASN ARG ILE LEU LEU SER GLU ALA VAL ARG ASP LYS GLU SEQRES 7 A 459 VAL VAL ALA VAL SER VAL ALA GLY ALA PHE ARG LYS GLY SEQRES 8 A 459 LYS SER PHE LEU MET ASP PHE MET LEU ARG TYR MET TYR SEQRES 9 A 459 ASN GLN GLU SER VAL ASP TRP VAL GLY ASP TYR ASN GLU SEQRES 10 A 459 PRO LEU THR GLY PHE SER TRP ARG GLY GLY SER GLU ARG SEQRES 11 A 459 GLU THR THR GLY ILE GLN ILE TRP SER GLU ILE PHE LEU SEQRES 12 A 459 ILE ASN LYS PRO ASP GLY LYS LYS VAL ALA VAL LEU LEU SEQRES 13 A 459 MET ASP THR GLN GLY THR PHE ASP SER GLN SER THR LEU SEQRES 14 A 459 ARG ASP SER ALA THR VAL PHE ALA LEU SER THR MET ILE SEQRES 15 A 459 SER SER ILE GLN VAL TYR ASN LEU SER GLN ASN VAL GLN SEQRES 16 A 459 GLU ASP ASP LEU GLN HIS LEU GLN LEU PHE THR GLU TYR SEQRES 17 A 459 GLY ARG LEU ALA MET GLU GLU THR PHE LEU LYS PRO PHE SEQRES 18 A 459 GLN SER LEU ILE PHE LEU VAL ARG ASP TRP SER PHE PRO SEQRES 19 A 459 TYR GLU PHE SER TYR GLY ALA ASP GLY GLY ALA LYS PHE SEQRES 20 A 459 LEU GLU LYS ARG LEU LYS VAL SER GLY ASN GLN HIS GLU SEQRES 21 A 459 GLU LEU GLN ASN VAL ARG LYS HIS ILE HIS SER CYS PHE SEQRES 22 A 459 THR ASN ILE SER CYS PHE LEU LEU PRO HIS PRO GLY LEU SEQRES 23 A 459 LYS VAL ALA THR ASN PRO ASN PHE ASP GLY LYS LEU LYS SEQRES 24 A 459 GLU ILE ASP ASP GLU PHE ILE LYS ASN LEU LYS ILE LEU SEQRES 25 A 459 ILE PRO TRP LEU LEU SER PRO GLU SER LEU ASP ILE LYS SEQRES 26 A 459 GLU ILE ASN GLY ASN LYS ILE THR CYS ARG GLY LEU VAL SEQRES 27 A 459 GLU TYR PHE LYS ALA TYR ILE LYS ILE TYR GLN GLY GLU SEQRES 28 A 459 GLU LEU PRO HIS PRO LYS SER MET LEU GLN ALA THR ALA SEQRES 29 A 459 GLU ALA ASN ASN LEU ALA ALA VAL ALA THR ALA LYS ASP SEQRES 30 A 459 THR TYR ASN LYS LYS MET GLU GLU ILE CYS GLY GLY ASP SEQRES 31 A 459 LYS PRO PHE LEU ALA PRO ASN ASP LEU GLN THR LYS HIS SEQRES 32 A 459 LEU GLN LEU LYS GLU GLU SER VAL LYS LEU PHE ARG GLY SEQRES 33 A 459 VAL LYS LYS MET GLY GLY GLU GLU PHE SER ARG ARG TYR SEQRES 34 A 459 LEU GLN GLN LEU GLU SER GLU ILE ASP GLU LEU TYR ILE SEQRES 35 A 459 GLN TYR ILE LYS HIS ASN ASP SER LYS ASN ILE PHE HIS SEQRES 36 A 459 ALA ALA ARG THR HET GDP A 593 28 HET MG A 599 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *20(H2 O) HELIX 1 1 ASP A 49 LEU A 58 1 10 HELIX 2 2 GLY A 79 ASN A 93 1 15 HELIX 3 3 SER A 153 SER A 171 1 19 HELIX 4 4 GLN A 183 ALA A 200 1 18 HELIX 5 5 GLY A 228 LYS A 241 1 14 HELIX 6 6 HIS A 256 CYS A 260 1 5 HELIX 7 7 GLY A 273 ASN A 279 1 7 HELIX 8 8 LYS A 285 ILE A 289 5 5 HELIX 9 9 ASP A 290 SER A 306 1 17 HELIX 10 10 THR A 321 GLU A 339 1 19 HELIX 11 11 SER A 346 GLU A 373 1 28 HELIX 12 12 ASP A 386 VAL A 405 1 20 HELIX 13 13 GLY A 410 LEU A 428 1 19 SHEET 1 A 4 PRO A 34 ILE A 39 0 SHEET 2 A 4 GLY A 122 TRP A 126 -1 O ILE A 125 N VAL A 35 SHEET 3 A 4 LYS A 139 GLY A 149 -1 O GLN A 148 N GLY A 122 SHEET 4 A 4 PHE A 130 ASN A 133 -1 N PHE A 130 O VAL A 142 SHEET 1 B 7 PRO A 34 ILE A 39 0 SHEET 2 B 7 GLY A 122 TRP A 126 -1 O ILE A 125 N VAL A 35 SHEET 3 B 7 LYS A 139 GLY A 149 -1 O GLN A 148 N GLY A 122 SHEET 4 B 7 VAL A 67 ALA A 75 1 N VAL A 70 O MET A 145 SHEET 5 B 7 ILE A 173 LEU A 178 1 O ASN A 177 N ALA A 73 SHEET 6 B 7 PHE A 209 TRP A 219 1 O ARG A 217 N LEU A 178 SHEET 7 B 7 PHE A 261 PRO A 270 1 O LEU A 269 N TRP A 219 SHEET 1 C 2 GLU A 314 ILE A 315 0 SHEET 2 C 2 ASN A 318 LYS A 319 -1 O ASN A 318 N ILE A 315 LINK OG SER A 81 MG MG A 599 1555 1555 2.50 LINK O3B GDP A 593 MG MG A 599 1555 1555 2.48 SITE 1 AC1 18 PHE A 76 ARG A 77 LYS A 78 GLY A 79 SITE 2 AC1 18 LYS A 80 SER A 81 PHE A 82 ARG A 113 SITE 3 AC1 18 ARG A 217 ASP A 218 PRO A 272 VAL A 276 SITE 4 AC1 18 ASN A 279 PRO A 280 HOH A 448 HOH A 452 SITE 5 AC1 18 HOH A 459 MG A 599 SITE 1 AC2 2 SER A 81 GDP A 593 CRYST1 144.889 144.889 103.694 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006902 0.003985 0.000000 0.00000 SCALE2 0.000000 0.007970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009644 0.00000