data_3QO4 # _entry.id 3QO4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QO4 RCSB RCSB063889 WWPDB D_1000063889 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QO4 _pdbx_database_status.recvd_initial_deposition_date 2011-02-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuester, M.' 1 'Kemmerzehl, S.' 2 'Dahms, S.O.' 3 'Roeser, D.' 4 'Than, M.E.' 5 # _citation.id primary _citation.title 'The crystal structure of death receptor 6 (DR6): a potential receptor of the amyloid precursor protein (APP).' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 409 _citation.page_first 189 _citation.page_last 201 _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21463639 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.03.048 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuester, M.' 1 primary 'Kemmerzehl, S.' 2 primary 'Dahms, S.O.' 3 primary 'Roeser, D.' 4 primary 'Than, M.E.' 5 # _cell.entry_id 3QO4 _cell.length_a 77.910 _cell.length_b 77.910 _cell.length_c 187.844 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QO4 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor necrosis factor receptor superfamily member 21' 19648.445 1 ? ? 'unp residues 42-218' ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 211 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Death receptor 6' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMQPEQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPM IEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNL VVIKPGTKETDNVCGTLPSFS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMQPEQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPM IEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNL VVIKPGTKETDNVCGTLPSFS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLN n 1 6 PRO n 1 7 GLU n 1 8 GLN n 1 9 LYS n 1 10 ALA n 1 11 SER n 1 12 ASN n 1 13 LEU n 1 14 ILE n 1 15 GLY n 1 16 THR n 1 17 TYR n 1 18 ARG n 1 19 HIS n 1 20 VAL n 1 21 ASP n 1 22 ARG n 1 23 ALA n 1 24 THR n 1 25 GLY n 1 26 GLN n 1 27 VAL n 1 28 LEU n 1 29 THR n 1 30 CYS n 1 31 ASP n 1 32 LYS n 1 33 CYS n 1 34 PRO n 1 35 ALA n 1 36 GLY n 1 37 THR n 1 38 TYR n 1 39 VAL n 1 40 SER n 1 41 GLU n 1 42 HIS n 1 43 CYS n 1 44 THR n 1 45 ASN n 1 46 THR n 1 47 SER n 1 48 LEU n 1 49 ARG n 1 50 VAL n 1 51 CYS n 1 52 SER n 1 53 SER n 1 54 CYS n 1 55 PRO n 1 56 VAL n 1 57 GLY n 1 58 THR n 1 59 PHE n 1 60 THR n 1 61 ARG n 1 62 HIS n 1 63 GLU n 1 64 ASN n 1 65 GLY n 1 66 ILE n 1 67 GLU n 1 68 LYS n 1 69 CYS n 1 70 HIS n 1 71 ASP n 1 72 CYS n 1 73 SER n 1 74 GLN n 1 75 PRO n 1 76 CYS n 1 77 PRO n 1 78 TRP n 1 79 PRO n 1 80 MET n 1 81 ILE n 1 82 GLU n 1 83 LYS n 1 84 LEU n 1 85 PRO n 1 86 CYS n 1 87 ALA n 1 88 ALA n 1 89 LEU n 1 90 THR n 1 91 ASP n 1 92 ARG n 1 93 GLU n 1 94 CYS n 1 95 THR n 1 96 CYS n 1 97 PRO n 1 98 PRO n 1 99 GLY n 1 100 MET n 1 101 PHE n 1 102 GLN n 1 103 SER n 1 104 ASN n 1 105 ALA n 1 106 THR n 1 107 CYS n 1 108 ALA n 1 109 PRO n 1 110 HIS n 1 111 THR n 1 112 VAL n 1 113 CYS n 1 114 PRO n 1 115 VAL n 1 116 GLY n 1 117 TRP n 1 118 GLY n 1 119 VAL n 1 120 ARG n 1 121 LYS n 1 122 LYS n 1 123 GLY n 1 124 THR n 1 125 GLU n 1 126 THR n 1 127 GLU n 1 128 ASP n 1 129 VAL n 1 130 ARG n 1 131 CYS n 1 132 LYS n 1 133 GLN n 1 134 CYS n 1 135 ALA n 1 136 ARG n 1 137 GLY n 1 138 THR n 1 139 PHE n 1 140 SER n 1 141 ASP n 1 142 VAL n 1 143 PRO n 1 144 SER n 1 145 SER n 1 146 VAL n 1 147 MET n 1 148 LYS n 1 149 CYS n 1 150 LYS n 1 151 ALA n 1 152 TYR n 1 153 THR n 1 154 ASP n 1 155 CYS n 1 156 LEU n 1 157 SER n 1 158 GLN n 1 159 ASN n 1 160 LEU n 1 161 VAL n 1 162 VAL n 1 163 ILE n 1 164 LYS n 1 165 PRO n 1 166 GLY n 1 167 THR n 1 168 LYS n 1 169 GLU n 1 170 THR n 1 171 ASP n 1 172 ASN n 1 173 VAL n 1 174 CYS n 1 175 GLY n 1 176 THR n 1 177 LEU n 1 178 PRO n 1 179 SER n 1 180 PHE n 1 181 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TNFRSF21, DR6, UNQ437/PRO868' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Origami2(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TNR21_HUMAN _struct_ref.pdbx_db_accession O75509 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QPEQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKL PCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIK PGTKETDNVCGTLPSFS ; _struct_ref.pdbx_align_begin 42 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QO4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75509 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 218 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 42 _struct_ref_seq.pdbx_auth_seq_align_end 218 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QO4 GLY A 1 ? UNP O75509 ? ? 'EXPRESSION TAG' 38 1 1 3QO4 SER A 2 ? UNP O75509 ? ? 'EXPRESSION TAG' 39 2 1 3QO4 HIS A 3 ? UNP O75509 ? ? 'EXPRESSION TAG' 40 3 1 3QO4 MET A 4 ? UNP O75509 ? ? 'EXPRESSION TAG' 41 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QO4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.19 _exptl_crystal.density_percent_sol 70.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;0.1 M Sodium citrate, 30% PEG4000, 0.5 M Ammoniumacetate , pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2010-06-03 _diffrn_detector.details 'double crystal monochromator with two sets of mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.918 1.0 2 1.03936 1.0 3 1.04008 1.0 4 1.04064 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.918, 1.03936, 1.04008, 1.04064' # _reflns.entry_id 3QO4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.982 _reflns.d_resolution_high 2.1 _reflns.number_obs 20455 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 11.2 _reflns.B_iso_Wilson_estimate 34.1 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_all 98.2 _reflns_shell.Rmerge_I_obs 0.325 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 2.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3QO4 _refine.ls_number_reflns_obs 17891 _refine.ls_number_reflns_all 17933 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.7 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.261 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 917 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1222 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 211 _refine_hist.number_atoms_total 1442 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 29.7 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0092 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.61 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.2 _refine_ls_shell.d_res_low 2.24 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.314 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.361 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3QO4 _struct.title 'The Crystal Structure of Death Receptor 6' _struct.pdbx_descriptor 'Tumor necrosis factor receptor superfamily member 21' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QO4 _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'Tumor Necrosis Factor Receptor (TNFR), Apoptosis, Alzheimer s Disease, Ligand-Receptor-Recognition' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;CONSIDERING A RATHER SMALL INTERFACE AREA OF 709 A2, ONLY TWO HYDROGEN BONDS AS ADDITIONAL STABILIZING CONTACTS AND MANY CONTACT MEDIATING WATER MOLECULES, WE CONCLUDE HOWEVER, THAT THE INTERACTION DETERMINED BY THE PISA SOFTWARE IS NOT OF PHYSIOLOGICAL RELEVANCE BUT RATHER IMPORTANT FOR STABILIZING THE DR6-CRD CRYSTALS ; # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id CYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 155 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 158 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id CYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 192 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 195 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 67 A CYS 80 1_555 ? ? ? ? ? ? ? 2.049 ? disulf2 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 70 A CYS 88 1_555 ? ? ? ? ? ? ? 2.034 ? disulf3 disulf ? ? A CYS 54 SG ? ? ? 1_555 A CYS 69 SG ? ? A CYS 91 A CYS 106 1_555 ? ? ? ? ? ? ? 2.046 ? disulf4 disulf ? ? A CYS 72 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 109 A CYS 123 1_555 ? ? ? ? ? ? ? 2.021 ? disulf5 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 113 A CYS 131 1_555 ? ? ? ? ? ? ? 2.020 ? disulf6 disulf ? ? A CYS 96 SG ? ? ? 1_555 A CYS 107 SG ? ? A CYS 133 A CYS 144 1_555 ? ? ? ? ? ? ? 2.025 ? disulf7 disulf ? ? A CYS 113 SG ? ? ? 1_555 A CYS 131 SG ? ? A CYS 150 A CYS 168 1_555 ? ? ? ? ? ? ? 2.029 ? disulf8 disulf ? ? A CYS 134 SG ? ? ? 1_555 A CYS 149 SG ? ? A CYS 171 A CYS 186 1_555 ? ? ? ? ? ? ? 2.033 ? disulf9 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 174 SG ? ? A CYS 192 A CYS 211 1_555 ? ? ? ? ? ? ? 2.024 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 78 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 115 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 79 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 116 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.16 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 16 ? ASP A 21 ? THR A 53 ASP A 58 A 2 GLY A 25 ? ASP A 31 ? GLY A 62 ASP A 68 B 1 THR A 37 ? GLU A 41 ? THR A 74 GLU A 78 B 2 VAL A 50 ? SER A 53 ? VAL A 87 SER A 90 C 1 ILE A 81 ? LEU A 84 ? ILE A 118 LEU A 121 C 2 GLU A 93 ? THR A 95 ? GLU A 130 THR A 132 D 1 MET A 100 ? SER A 103 ? MET A 137 SER A 140 D 2 THR A 106 ? PRO A 109 ? THR A 143 PRO A 146 E 1 TRP A 117 ? LYS A 121 ? TRP A 154 LYS A 158 E 2 ARG A 130 ? GLN A 133 ? ARG A 167 GLN A 170 F 1 VAL A 161 ? LYS A 164 ? VAL A 198 LYS A 201 F 2 VAL A 173 ? GLY A 175 ? VAL A 210 GLY A 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 19 ? N HIS A 56 O LEU A 28 ? O LEU A 65 B 1 2 N GLU A 41 ? N GLU A 78 O VAL A 50 ? O VAL A 87 C 1 2 N LYS A 83 ? N LYS A 120 O GLU A 93 ? O GLU A 130 D 1 2 N SER A 103 ? N SER A 140 O THR A 106 ? O THR A 143 E 1 2 N ARG A 120 ? N ARG A 157 O ARG A 130 ? O ARG A 167 F 1 2 N VAL A 161 ? N VAL A 198 O GLY A 175 ? O GLY A 212 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT A 1' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TYR A 17 ? TYR A 54 . ? 1_545 ? 2 AC1 4 ARG A 18 ? ARG A 55 . ? 1_545 ? 3 AC1 4 LYS A 164 ? LYS A 201 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 355 . ? 7_645 ? 5 AC2 5 THR A 60 ? THR A 97 . ? 1_555 ? 6 AC2 5 ARG A 61 ? ARG A 98 . ? 1_555 ? 7 AC2 5 HIS A 62 ? HIS A 99 . ? 1_555 ? 8 AC2 5 HIS A 70 ? HIS A 107 . ? 1_555 ? 9 AC2 5 HOH D . ? HOH A 274 . ? 1_555 ? # _database_PDB_matrix.entry_id 3QO4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QO4 _atom_sites.fract_transf_matrix[1][1] 0.012835 _atom_sites.fract_transf_matrix[1][2] 0.007410 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005324 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 38 ? ? ? A . n A 1 2 SER 2 39 ? ? ? A . n A 1 3 HIS 3 40 ? ? ? A . n A 1 4 MET 4 41 ? ? ? A . n A 1 5 GLN 5 42 ? ? ? A . n A 1 6 PRO 6 43 ? ? ? A . n A 1 7 GLU 7 44 ? ? ? A . n A 1 8 GLN 8 45 ? ? ? A . n A 1 9 LYS 9 46 ? ? ? A . n A 1 10 ALA 10 47 ? ? ? A . n A 1 11 SER 11 48 ? ? ? A . n A 1 12 ASN 12 49 ? ? ? A . n A 1 13 LEU 13 50 50 LEU LEU A . n A 1 14 ILE 14 51 51 ILE ILE A . n A 1 15 GLY 15 52 52 GLY GLY A . n A 1 16 THR 16 53 53 THR THR A . n A 1 17 TYR 17 54 54 TYR TYR A . n A 1 18 ARG 18 55 55 ARG ARG A . n A 1 19 HIS 19 56 56 HIS HIS A . n A 1 20 VAL 20 57 57 VAL VAL A . n A 1 21 ASP 21 58 58 ASP ASP A . n A 1 22 ARG 22 59 59 ARG ARG A . n A 1 23 ALA 23 60 60 ALA ALA A . n A 1 24 THR 24 61 61 THR THR A . n A 1 25 GLY 25 62 62 GLY GLY A . n A 1 26 GLN 26 63 63 GLN GLN A . n A 1 27 VAL 27 64 64 VAL VAL A . n A 1 28 LEU 28 65 65 LEU LEU A . n A 1 29 THR 29 66 66 THR THR A . n A 1 30 CYS 30 67 67 CYS CYS A . n A 1 31 ASP 31 68 68 ASP ASP A . n A 1 32 LYS 32 69 69 LYS LYS A . n A 1 33 CYS 33 70 70 CYS CYS A . n A 1 34 PRO 34 71 71 PRO PRO A . n A 1 35 ALA 35 72 72 ALA ALA A . n A 1 36 GLY 36 73 73 GLY GLY A . n A 1 37 THR 37 74 74 THR THR A . n A 1 38 TYR 38 75 75 TYR TYR A . n A 1 39 VAL 39 76 76 VAL VAL A . n A 1 40 SER 40 77 77 SER SER A . n A 1 41 GLU 41 78 78 GLU GLU A . n A 1 42 HIS 42 79 79 HIS HIS A . n A 1 43 CYS 43 80 80 CYS CYS A . n A 1 44 THR 44 81 81 THR THR A . n A 1 45 ASN 45 82 82 ASN ASN A . n A 1 46 THR 46 83 83 THR THR A . n A 1 47 SER 47 84 84 SER SER A . n A 1 48 LEU 48 85 85 LEU LEU A . n A 1 49 ARG 49 86 86 ARG ARG A . n A 1 50 VAL 50 87 87 VAL VAL A . n A 1 51 CYS 51 88 88 CYS CYS A . n A 1 52 SER 52 89 89 SER SER A . n A 1 53 SER 53 90 90 SER SER A . n A 1 54 CYS 54 91 91 CYS CYS A . n A 1 55 PRO 55 92 92 PRO PRO A . n A 1 56 VAL 56 93 93 VAL VAL A . n A 1 57 GLY 57 94 94 GLY GLY A . n A 1 58 THR 58 95 95 THR THR A . n A 1 59 PHE 59 96 96 PHE PHE A . n A 1 60 THR 60 97 97 THR THR A . n A 1 61 ARG 61 98 98 ARG ARG A . n A 1 62 HIS 62 99 99 HIS HIS A . n A 1 63 GLU 63 100 100 GLU GLU A . n A 1 64 ASN 64 101 101 ASN ASN A . n A 1 65 GLY 65 102 102 GLY GLY A . n A 1 66 ILE 66 103 103 ILE ILE A . n A 1 67 GLU 67 104 104 GLU GLU A . n A 1 68 LYS 68 105 105 LYS LYS A . n A 1 69 CYS 69 106 106 CYS CYS A . n A 1 70 HIS 70 107 107 HIS HIS A . n A 1 71 ASP 71 108 108 ASP ASP A . n A 1 72 CYS 72 109 109 CYS CYS A . n A 1 73 SER 73 110 110 SER SER A . n A 1 74 GLN 74 111 111 GLN GLN A . n A 1 75 PRO 75 112 112 PRO PRO A . n A 1 76 CYS 76 113 113 CYS CYS A . n A 1 77 PRO 77 114 114 PRO PRO A . n A 1 78 TRP 78 115 115 TRP TRP A . n A 1 79 PRO 79 116 116 PRO PRO A . n A 1 80 MET 80 117 117 MET MET A . n A 1 81 ILE 81 118 118 ILE ILE A . n A 1 82 GLU 82 119 119 GLU GLU A . n A 1 83 LYS 83 120 120 LYS LYS A . n A 1 84 LEU 84 121 121 LEU LEU A . n A 1 85 PRO 85 122 122 PRO PRO A . n A 1 86 CYS 86 123 123 CYS CYS A . n A 1 87 ALA 87 124 124 ALA ALA A . n A 1 88 ALA 88 125 125 ALA ALA A . n A 1 89 LEU 89 126 126 LEU LEU A . n A 1 90 THR 90 127 127 THR THR A . n A 1 91 ASP 91 128 128 ASP ASP A . n A 1 92 ARG 92 129 129 ARG ARG A . n A 1 93 GLU 93 130 130 GLU GLU A . n A 1 94 CYS 94 131 131 CYS CYS A . n A 1 95 THR 95 132 132 THR THR A . n A 1 96 CYS 96 133 133 CYS CYS A . n A 1 97 PRO 97 134 134 PRO PRO A . n A 1 98 PRO 98 135 135 PRO PRO A . n A 1 99 GLY 99 136 136 GLY GLY A . n A 1 100 MET 100 137 137 MET MET A . n A 1 101 PHE 101 138 138 PHE PHE A . n A 1 102 GLN 102 139 139 GLN GLN A . n A 1 103 SER 103 140 140 SER SER A . n A 1 104 ASN 104 141 141 ASN ASN A . n A 1 105 ALA 105 142 142 ALA ALA A . n A 1 106 THR 106 143 143 THR THR A . n A 1 107 CYS 107 144 144 CYS CYS A . n A 1 108 ALA 108 145 145 ALA ALA A . n A 1 109 PRO 109 146 146 PRO PRO A . n A 1 110 HIS 110 147 147 HIS HIS A . n A 1 111 THR 111 148 148 THR THR A . n A 1 112 VAL 112 149 149 VAL VAL A . n A 1 113 CYS 113 150 150 CYS CYS A . n A 1 114 PRO 114 151 151 PRO PRO A . n A 1 115 VAL 115 152 152 VAL VAL A . n A 1 116 GLY 116 153 153 GLY GLY A . n A 1 117 TRP 117 154 154 TRP TRP A . n A 1 118 GLY 118 155 155 GLY GLY A . n A 1 119 VAL 119 156 156 VAL VAL A . n A 1 120 ARG 120 157 157 ARG ARG A . n A 1 121 LYS 121 158 158 LYS LYS A . n A 1 122 LYS 122 159 159 LYS LYS A . n A 1 123 GLY 123 160 160 GLY GLY A . n A 1 124 THR 124 161 161 THR THR A . n A 1 125 GLU 125 162 162 GLU GLU A . n A 1 126 THR 126 163 163 THR THR A . n A 1 127 GLU 127 164 164 GLU GLU A . n A 1 128 ASP 128 165 165 ASP ASP A . n A 1 129 VAL 129 166 166 VAL VAL A . n A 1 130 ARG 130 167 167 ARG ARG A . n A 1 131 CYS 131 168 168 CYS CYS A . n A 1 132 LYS 132 169 169 LYS LYS A . n A 1 133 GLN 133 170 170 GLN GLN A . n A 1 134 CYS 134 171 171 CYS CYS A . n A 1 135 ALA 135 172 172 ALA ALA A . n A 1 136 ARG 136 173 173 ARG ARG A . n A 1 137 GLY 137 174 174 GLY GLY A . n A 1 138 THR 138 175 175 THR THR A . n A 1 139 PHE 139 176 176 PHE PHE A . n A 1 140 SER 140 177 177 SER SER A . n A 1 141 ASP 141 178 178 ASP ASP A . n A 1 142 VAL 142 179 179 VAL VAL A . n A 1 143 PRO 143 180 180 PRO PRO A . n A 1 144 SER 144 181 181 SER SER A . n A 1 145 SER 145 182 182 SER SER A . n A 1 146 VAL 146 183 183 VAL VAL A . n A 1 147 MET 147 184 184 MET MET A . n A 1 148 LYS 148 185 185 LYS LYS A . n A 1 149 CYS 149 186 186 CYS CYS A . n A 1 150 LYS 150 187 187 LYS LYS A . n A 1 151 ALA 151 188 188 ALA ALA A . n A 1 152 TYR 152 189 189 TYR TYR A . n A 1 153 THR 153 190 190 THR THR A . n A 1 154 ASP 154 191 191 ASP ASP A . n A 1 155 CYS 155 192 192 CYS CYS A . n A 1 156 LEU 156 193 193 LEU LEU A . n A 1 157 SER 157 194 194 SER SER A . n A 1 158 GLN 158 195 195 GLN GLN A . n A 1 159 ASN 159 196 196 ASN ASN A . n A 1 160 LEU 160 197 197 LEU LEU A . n A 1 161 VAL 161 198 198 VAL VAL A . n A 1 162 VAL 162 199 199 VAL VAL A . n A 1 163 ILE 163 200 200 ILE ILE A . n A 1 164 LYS 164 201 201 LYS LYS A . n A 1 165 PRO 165 202 202 PRO PRO A . n A 1 166 GLY 166 203 203 GLY GLY A . n A 1 167 THR 167 204 204 THR THR A . n A 1 168 LYS 168 205 205 LYS LYS A . n A 1 169 GLU 169 206 206 GLU GLU A . n A 1 170 THR 170 207 207 THR THR A . n A 1 171 ASP 171 208 208 ASP ASP A . n A 1 172 ASN 172 209 209 ASN ASN A . n A 1 173 VAL 173 210 210 VAL VAL A . n A 1 174 CYS 174 211 211 CYS CYS A . n A 1 175 GLY 175 212 212 GLY GLY A . n A 1 176 THR 176 213 ? ? ? A . n A 1 177 LEU 177 214 ? ? ? A . n A 1 178 PRO 178 215 ? ? ? A . n A 1 179 SER 179 216 ? ? ? A . n A 1 180 PHE 180 217 ? ? ? A . n A 1 181 SER 181 218 ? ? ? A . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2120 ? 2 MORE -46 ? 2 'SSA (A^2)' 19900 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.3073333333 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 293 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-02-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHARP phasing . ? 1 CNS refinement . ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED BY USING PYMOL'S DSS-FUNCTION ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED BY USING PYMOL'S DSS-FUNCTION ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 181 ? ? -173.17 142.72 2 1 SER A 194 ? ? -61.04 0.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 105 ? CE ? A LYS 68 CE 2 1 Y 0 A LYS 105 ? NZ ? A LYS 68 NZ 3 1 Y 0 A LEU 126 ? CG ? A LEU 89 CG 4 1 Y 0 A LEU 126 ? CD1 ? A LEU 89 CD1 5 1 Y 0 A LEU 126 ? CD2 ? A LEU 89 CD2 6 1 Y 0 A ASN 141 ? CB ? A ASN 104 CB 7 1 Y 0 A ASN 141 ? CG ? A ASN 104 CG 8 1 Y 0 A ASN 141 ? OD1 ? A ASN 104 OD1 9 1 Y 0 A ASN 141 ? ND2 ? A ASN 104 ND2 10 1 Y 0 A LYS 158 ? CE ? A LYS 121 CE 11 1 Y 0 A LYS 158 ? NZ ? A LYS 121 NZ 12 1 Y 0 A GLU 164 ? CD ? A GLU 127 CD 13 1 Y 0 A GLU 164 ? OE1 ? A GLU 127 OE1 14 1 Y 0 A GLU 164 ? OE2 ? A GLU 127 OE2 15 1 Y 0 A LYS 169 ? CG ? A LYS 132 CG 16 1 Y 0 A LYS 169 ? CD ? A LYS 132 CD 17 1 Y 0 A LYS 169 ? CE ? A LYS 132 CE 18 1 Y 0 A LYS 169 ? NZ ? A LYS 132 NZ 19 1 Y 0 A ARG 173 ? CG ? A ARG 136 CG 20 1 Y 0 A ARG 173 ? CD ? A ARG 136 CD 21 1 Y 0 A ARG 173 ? NE ? A ARG 136 NE 22 1 Y 0 A ARG 173 ? CZ ? A ARG 136 CZ 23 1 Y 0 A ARG 173 ? NH1 ? A ARG 136 NH1 24 1 Y 0 A ARG 173 ? NH2 ? A ARG 136 NH2 25 1 Y 0 A LYS 185 ? CE ? A LYS 148 CE 26 1 Y 0 A LYS 185 ? NZ ? A LYS 148 NZ 27 1 Y 0 A LEU 193 ? CD1 ? A LEU 156 CD1 28 1 Y 0 A LEU 193 ? CD2 ? A LEU 156 CD2 29 1 Y 0 A VAL 198 ? CG1 ? A VAL 161 CG1 30 1 Y 0 A VAL 198 ? CG2 ? A VAL 161 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 38 ? A GLY 1 2 1 Y 1 A SER 39 ? A SER 2 3 1 Y 1 A HIS 40 ? A HIS 3 4 1 Y 1 A MET 41 ? A MET 4 5 1 Y 1 A GLN 42 ? A GLN 5 6 1 Y 1 A PRO 43 ? A PRO 6 7 1 Y 1 A GLU 44 ? A GLU 7 8 1 Y 1 A GLN 45 ? A GLN 8 9 1 Y 1 A LYS 46 ? A LYS 9 10 1 Y 1 A ALA 47 ? A ALA 10 11 1 Y 1 A SER 48 ? A SER 11 12 1 Y 1 A ASN 49 ? A ASN 12 13 1 Y 1 A THR 213 ? A THR 176 14 1 Y 1 A LEU 214 ? A LEU 177 15 1 Y 1 A PRO 215 ? A PRO 178 16 1 Y 1 A SER 216 ? A SER 179 17 1 Y 1 A PHE 217 ? A PHE 180 18 1 Y 1 A SER 218 ? A SER 181 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 1 1 ACT ACT A . C 3 SO4 1 2 2 SO4 SO4 A . D 4 HOH 1 219 219 HOH HOH A . D 4 HOH 2 220 220 HOH HOH A . D 4 HOH 3 221 221 HOH HOH A . D 4 HOH 4 222 222 HOH HOH A . D 4 HOH 5 223 223 HOH HOH A . D 4 HOH 6 224 224 HOH HOH A . D 4 HOH 7 225 225 HOH HOH A . D 4 HOH 8 226 226 HOH HOH A . D 4 HOH 9 227 227 HOH HOH A . D 4 HOH 10 228 228 HOH HOH A . D 4 HOH 11 229 229 HOH HOH A . D 4 HOH 12 230 230 HOH HOH A . D 4 HOH 13 231 231 HOH HOH A . D 4 HOH 14 232 232 HOH HOH A . D 4 HOH 15 233 233 HOH HOH A . D 4 HOH 16 234 234 HOH HOH A . D 4 HOH 17 235 235 HOH HOH A . D 4 HOH 18 236 236 HOH HOH A . D 4 HOH 19 237 237 HOH HOH A . D 4 HOH 20 238 238 HOH HOH A . D 4 HOH 21 239 239 HOH HOH A . D 4 HOH 22 240 240 HOH HOH A . D 4 HOH 23 241 241 HOH HOH A . D 4 HOH 24 242 242 HOH HOH A . D 4 HOH 25 243 243 HOH HOH A . D 4 HOH 26 244 244 HOH HOH A . D 4 HOH 27 245 245 HOH HOH A . D 4 HOH 28 246 246 HOH HOH A . D 4 HOH 29 247 247 HOH HOH A . D 4 HOH 30 248 248 HOH HOH A . D 4 HOH 31 249 249 HOH HOH A . D 4 HOH 32 250 250 HOH HOH A . D 4 HOH 33 251 251 HOH HOH A . D 4 HOH 34 252 252 HOH HOH A . D 4 HOH 35 253 253 HOH HOH A . D 4 HOH 36 254 254 HOH HOH A . D 4 HOH 37 255 255 HOH HOH A . D 4 HOH 38 256 256 HOH HOH A . D 4 HOH 39 257 257 HOH HOH A . D 4 HOH 40 258 258 HOH HOH A . D 4 HOH 41 259 259 HOH HOH A . D 4 HOH 42 260 260 HOH HOH A . D 4 HOH 43 261 261 HOH HOH A . D 4 HOH 44 262 262 HOH HOH A . D 4 HOH 45 263 263 HOH HOH A . D 4 HOH 46 264 264 HOH HOH A . D 4 HOH 47 265 265 HOH HOH A . D 4 HOH 48 266 266 HOH HOH A . D 4 HOH 49 267 267 HOH HOH A . D 4 HOH 50 268 268 HOH HOH A . D 4 HOH 51 269 269 HOH HOH A . D 4 HOH 52 270 270 HOH HOH A . D 4 HOH 53 271 271 HOH HOH A . D 4 HOH 54 272 272 HOH HOH A . D 4 HOH 55 273 273 HOH HOH A . D 4 HOH 56 274 274 HOH HOH A . D 4 HOH 57 275 275 HOH HOH A . D 4 HOH 58 276 276 HOH HOH A . D 4 HOH 59 277 277 HOH HOH A . D 4 HOH 60 278 278 HOH HOH A . D 4 HOH 61 279 279 HOH HOH A . D 4 HOH 62 280 280 HOH HOH A . D 4 HOH 63 281 281 HOH HOH A . D 4 HOH 64 282 282 HOH HOH A . D 4 HOH 65 283 283 HOH HOH A . D 4 HOH 66 284 284 HOH HOH A . D 4 HOH 67 285 285 HOH HOH A . D 4 HOH 68 286 286 HOH HOH A . D 4 HOH 69 287 287 HOH HOH A . D 4 HOH 70 288 288 HOH HOH A . D 4 HOH 71 289 289 HOH HOH A . D 4 HOH 72 290 290 HOH HOH A . D 4 HOH 73 291 291 HOH HOH A . D 4 HOH 74 292 292 HOH HOH A . D 4 HOH 75 293 293 HOH HOH A . D 4 HOH 76 294 294 HOH HOH A . D 4 HOH 77 295 295 HOH HOH A . D 4 HOH 78 296 296 HOH HOH A . D 4 HOH 79 297 297 HOH HOH A . D 4 HOH 80 298 298 HOH HOH A . D 4 HOH 81 299 299 HOH HOH A . D 4 HOH 82 300 300 HOH HOH A . D 4 HOH 83 301 301 HOH HOH A . D 4 HOH 84 302 302 HOH HOH A . D 4 HOH 85 303 303 HOH HOH A . D 4 HOH 86 304 304 HOH HOH A . D 4 HOH 87 305 305 HOH HOH A . D 4 HOH 88 306 306 HOH HOH A . D 4 HOH 89 307 307 HOH HOH A . D 4 HOH 90 308 308 HOH HOH A . D 4 HOH 91 309 309 HOH HOH A . D 4 HOH 92 310 310 HOH HOH A . D 4 HOH 93 311 311 HOH HOH A . D 4 HOH 94 312 312 HOH HOH A . D 4 HOH 95 313 313 HOH HOH A . D 4 HOH 96 314 314 HOH HOH A . D 4 HOH 97 315 315 HOH HOH A . D 4 HOH 98 316 316 HOH HOH A . D 4 HOH 99 317 317 HOH HOH A . D 4 HOH 100 318 318 HOH HOH A . D 4 HOH 101 319 319 HOH HOH A . D 4 HOH 102 320 320 HOH HOH A . D 4 HOH 103 321 321 HOH HOH A . D 4 HOH 104 322 322 HOH HOH A . D 4 HOH 105 323 323 HOH HOH A . D 4 HOH 106 324 324 HOH HOH A . D 4 HOH 107 325 325 HOH HOH A . D 4 HOH 108 326 326 HOH HOH A . D 4 HOH 109 327 327 HOH HOH A . D 4 HOH 110 328 328 HOH HOH A . D 4 HOH 111 329 329 HOH HOH A . D 4 HOH 112 330 330 HOH HOH A . D 4 HOH 113 331 331 HOH HOH A . D 4 HOH 114 332 332 HOH HOH A . D 4 HOH 115 333 333 HOH HOH A . D 4 HOH 116 334 334 HOH HOH A . D 4 HOH 117 335 335 HOH HOH A . D 4 HOH 118 336 336 HOH HOH A . D 4 HOH 119 337 337 HOH HOH A . D 4 HOH 120 338 338 HOH HOH A . D 4 HOH 121 339 339 HOH HOH A . D 4 HOH 122 340 340 HOH HOH A . D 4 HOH 123 341 341 HOH HOH A . D 4 HOH 124 342 342 HOH HOH A . D 4 HOH 125 343 343 HOH HOH A . D 4 HOH 126 344 344 HOH HOH A . D 4 HOH 127 345 345 HOH HOH A . D 4 HOH 128 346 346 HOH HOH A . D 4 HOH 129 347 347 HOH HOH A . D 4 HOH 130 348 348 HOH HOH A . D 4 HOH 131 349 349 HOH HOH A . D 4 HOH 132 350 350 HOH HOH A . D 4 HOH 133 351 351 HOH HOH A . D 4 HOH 134 352 352 HOH HOH A . D 4 HOH 135 353 353 HOH HOH A . D 4 HOH 136 354 354 HOH HOH A . D 4 HOH 137 355 355 HOH HOH A . D 4 HOH 138 356 356 HOH HOH A . D 4 HOH 139 357 357 HOH HOH A . D 4 HOH 140 358 358 HOH HOH A . D 4 HOH 141 359 359 HOH HOH A . D 4 HOH 142 360 360 HOH HOH A . D 4 HOH 143 361 361 HOH HOH A . D 4 HOH 144 362 362 HOH HOH A . D 4 HOH 145 363 363 HOH HOH A . D 4 HOH 146 364 364 HOH HOH A . D 4 HOH 147 365 365 HOH HOH A . D 4 HOH 148 366 366 HOH HOH A . D 4 HOH 149 367 367 HOH HOH A . D 4 HOH 150 368 368 HOH HOH A . D 4 HOH 151 369 369 HOH HOH A . D 4 HOH 152 370 370 HOH HOH A . D 4 HOH 153 371 371 HOH HOH A . D 4 HOH 154 372 372 HOH HOH A . D 4 HOH 155 373 373 HOH HOH A . D 4 HOH 156 374 374 HOH HOH A . D 4 HOH 157 375 375 HOH HOH A . D 4 HOH 158 376 376 HOH HOH A . D 4 HOH 159 377 377 HOH HOH A . D 4 HOH 160 378 378 HOH HOH A . D 4 HOH 161 379 379 HOH HOH A . D 4 HOH 162 380 380 HOH HOH A . D 4 HOH 163 381 381 HOH HOH A . D 4 HOH 164 382 382 HOH HOH A . D 4 HOH 165 383 383 HOH HOH A . D 4 HOH 166 384 384 HOH HOH A . D 4 HOH 167 385 385 HOH HOH A . D 4 HOH 168 386 386 HOH HOH A . D 4 HOH 169 387 387 HOH HOH A . D 4 HOH 170 388 388 HOH HOH A . D 4 HOH 171 389 389 HOH HOH A . D 4 HOH 172 390 390 HOH HOH A . D 4 HOH 173 391 391 HOH HOH A . D 4 HOH 174 392 392 HOH HOH A . D 4 HOH 175 393 393 HOH HOH A . D 4 HOH 176 394 394 HOH HOH A . D 4 HOH 177 395 395 HOH HOH A . D 4 HOH 178 396 396 HOH HOH A . D 4 HOH 179 397 397 HOH HOH A . D 4 HOH 180 398 398 HOH HOH A . D 4 HOH 181 399 399 HOH HOH A . D 4 HOH 182 400 400 HOH HOH A . D 4 HOH 183 401 401 HOH HOH A . D 4 HOH 184 402 402 HOH HOH A . D 4 HOH 185 403 403 HOH HOH A . D 4 HOH 186 404 404 HOH HOH A . D 4 HOH 187 405 405 HOH HOH A . D 4 HOH 188 406 406 HOH HOH A . D 4 HOH 189 407 407 HOH HOH A . D 4 HOH 190 408 408 HOH HOH A . D 4 HOH 191 409 409 HOH HOH A . D 4 HOH 192 410 410 HOH HOH A . D 4 HOH 193 411 411 HOH HOH A . D 4 HOH 194 412 412 HOH HOH A . D 4 HOH 195 413 413 HOH HOH A . D 4 HOH 196 414 414 HOH HOH A . D 4 HOH 197 415 415 HOH HOH A . D 4 HOH 198 416 416 HOH HOH A . D 4 HOH 199 417 417 HOH HOH A . D 4 HOH 200 418 418 HOH HOH A . D 4 HOH 201 419 419 HOH HOH A . D 4 HOH 202 420 420 HOH HOH A . D 4 HOH 203 421 421 HOH HOH A . D 4 HOH 204 422 422 HOH HOH A . D 4 HOH 205 423 423 HOH HOH A . D 4 HOH 206 424 424 HOH HOH A . D 4 HOH 207 425 425 HOH HOH A . D 4 HOH 208 426 426 HOH HOH A . D 4 HOH 209 427 427 HOH HOH A . D 4 HOH 210 428 428 HOH HOH A . D 4 HOH 211 429 429 HOH HOH A . #