HEADER HYDROLASE 10-FEB-11 3QOL TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT D+PHS/V23E AT PH TITLE 2 6 DETERMINED AT 100 K COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DELETION UNP RESIDUES 126-131; COMPND 5 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE, COMPND 6 NUCLEASE B, NUCLEASE A; COMPND 7 EC: 3.1.31.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: NUC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS HYDROLASE, HYPERSTABLE, NUCLEASE, PDTP EXPDTA X-RAY DIFFRACTION AUTHOR A.ROBINSON,J.L.SCHLESSMAN,E.B.GARCIA-MORENO REVDAT 4 13-SEP-23 3QOL 1 REMARK SEQADV LINK REVDAT 3 03-SEP-14 3QOL 1 JRNL REVDAT 2 20-AUG-14 3QOL 1 JRNL VERSN REVDAT 1 16-MAR-11 3QOL 0 JRNL AUTH A.C.ROBINSON,C.A.CASTANEDA,J.L.SCHLESSMAN,B.GARCIA-MORENO E JRNL TITL STRUCTURAL AND THERMODYNAMIC CONSEQUENCES OF BURIAL OF AN JRNL TITL 2 ARTIFICIAL ION PAIR IN THE HYDROPHOBIC INTERIOR OF A JRNL TITL 3 PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 11685 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25074910 JRNL DOI 10.1073/PNAS.1402900111 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 528 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1079 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1451 ; 1.695 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 6.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;35.259 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 209 ;16.444 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 6.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 154 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 785 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 639 ; 1.467 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1020 ; 2.522 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 440 ; 3.518 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 431 ; 5.523 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6150 -4.5700 3.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.3097 T22: 0.2550 REMARK 3 T33: 0.2394 T12: 0.0177 REMARK 3 T13: -0.0471 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.6811 L22: 1.6046 REMARK 3 L33: -0.1394 L12: -0.9278 REMARK 3 L13: -0.3643 L23: 0.3817 REMARK 3 S TENSOR REMARK 3 S11: -0.1357 S12: -0.0810 S13: -0.3107 REMARK 3 S21: 0.0863 S22: 0.0381 S23: 0.0592 REMARK 3 S31: 0.0104 S32: 0.0467 S33: 0.0975 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2680 1.2540 4.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.3196 T22: 0.2882 REMARK 3 T33: 0.2575 T12: 0.0163 REMARK 3 T13: -0.0315 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.8878 L22: 1.1336 REMARK 3 L33: -0.2603 L12: -1.0752 REMARK 3 L13: 0.2520 L23: 0.4302 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: -0.0307 S13: 0.0421 REMARK 3 S21: 0.0359 S22: 0.1047 S23: -0.1718 REMARK 3 S31: 0.0338 S32: 0.0143 S33: -0.0385 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8430 4.3020 16.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.4379 T22: 0.6938 REMARK 3 T33: 0.0653 T12: 0.2342 REMARK 3 T13: -0.0368 T23: 0.0969 REMARK 3 L TENSOR REMARK 3 L11: 5.3953 L22: 2.3563 REMARK 3 L33: 0.5340 L12: -1.1129 REMARK 3 L13: 0.4964 L23: 2.4891 REMARK 3 S TENSOR REMARK 3 S11: -0.8644 S12: -1.9679 S13: -0.3175 REMARK 3 S21: 0.1785 S22: 0.7149 S23: 0.1499 REMARK 3 S31: 0.1295 S32: -0.0667 S33: 0.1495 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4060 -3.0360 -1.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.3160 T22: 0.2823 REMARK 3 T33: 0.3649 T12: -0.0195 REMARK 3 T13: -0.1110 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 2.3906 L22: 4.7576 REMARK 3 L33: -0.5779 L12: -2.3962 REMARK 3 L13: -0.1133 L23: -0.8040 REMARK 3 S TENSOR REMARK 3 S11: 0.3326 S12: 0.3932 S13: -0.8897 REMARK 3 S21: -0.1739 S22: -0.2310 S23: 0.5165 REMARK 3 S31: -0.1318 S32: 0.1207 S33: -0.1017 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0490 1.7950 0.0540 REMARK 3 T TENSOR REMARK 3 T11: 0.2999 T22: 0.2919 REMARK 3 T33: 0.2763 T12: -0.0092 REMARK 3 T13: -0.0104 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.7246 L22: 2.2036 REMARK 3 L33: -0.0182 L12: 0.3164 REMARK 3 L13: -0.0815 L23: -0.6994 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: 0.1626 S13: -0.1519 REMARK 3 S21: -0.0339 S22: 0.0627 S23: 0.0160 REMARK 3 S31: 0.0556 S32: 0.0445 S33: -0.1414 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9680 9.8330 2.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.2848 REMARK 3 T33: 0.2484 T12: -0.0198 REMARK 3 T13: -0.0427 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.7443 L22: 1.1664 REMARK 3 L33: 0.6252 L12: -2.1016 REMARK 3 L13: -0.4290 L23: 0.6359 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0189 S13: 0.1864 REMARK 3 S21: -0.0389 S22: 0.1069 S23: 0.2353 REMARK 3 S31: 0.0383 S32: 0.0321 S33: -0.1069 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6750 14.8900 10.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.3129 REMARK 3 T33: 0.3345 T12: 0.0465 REMARK 3 T13: 0.0389 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 2.5206 L22: 1.8618 REMARK 3 L33: 2.2723 L12: 0.4704 REMARK 3 L13: 1.9030 L23: -0.0442 REMARK 3 S TENSOR REMARK 3 S11: -0.1910 S12: -0.2151 S13: 0.4900 REMARK 3 S21: -0.0182 S22: 0.1978 S23: 0.3253 REMARK 3 S31: -0.0562 S32: -0.1135 S33: -0.0068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000063906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GE111 REMARK 200 OPTICS : MULTI-LAYER OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT, XPREP REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11002 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.13 REMARK 200 R MERGE (I) : 0.03650 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.21 REMARK 200 R MERGE FOR SHELL (I) : 0.21390 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BDC WITH NON-PROTEIN ATOMS REMOVED, B-FACTORS SET REMARK 200 TO 20 AND RESIDUES 23,113-116 CHANGED TO ALA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 PDTP, CACL2, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.22650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -70.58 -115.79 REMARK 500 ASP A 19 -158.13 -149.30 REMARK 500 TYR A 54 -3.20 76.16 REMARK 500 ASN A 138 -104.75 48.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 150 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD2 REMARK 620 2 ASP A 40 OD1 80.3 REMARK 620 3 THR A 41 O 88.9 78.9 REMARK 620 4 GLU A 43 OE2 148.8 128.0 107.6 REMARK 620 5 THP A 151 O5P 88.4 64.6 143.3 92.9 REMARK 620 6 HOH A 157 O 72.2 132.2 136.9 77.9 76.1 REMARK 620 7 HOH A 167 O 80.4 138.4 64.2 83.3 150.5 74.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP A 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BDC RELATED DB: PDB REMARK 900 STAPHYLOCOCCAL NUCLEASE VARIANT D+PHS REMARK 900 RELATED ID: 3NHH RELATED DB: PDB REMARK 900 STAPHYLOCOCCAL NUCLEASE VARIANT D+PHS/V23E/L36K DBREF 3QOL A 1 149 UNP P00644 NUC_STAAU 41 189 SEQADV 3QOL GLU A 23 UNP P00644 VAL 63 ENGINEERED MUTATION SEQADV 3QOL A UNP P00644 THR 84 DELETION SEQADV 3QOL A UNP P00644 LYS 85 DELETION SEQADV 3QOL A UNP P00644 HIS 86 DELETION SEQADV 3QOL A UNP P00644 PRO 87 DELETION SEQADV 3QOL A UNP P00644 LYS 88 DELETION SEQADV 3QOL A UNP P00644 LYS 89 DELETION SEQADV 3QOL PHE A 50 UNP P00644 GLY 90 ENGINEERED MUTATION SEQADV 3QOL ASN A 51 UNP P00644 VAL 91 ENGINEERED MUTATION SEQADV 3QOL GLY A 117 UNP P00644 PRO 157 ENGINEERED MUTATION SEQADV 3QOL LEU A 124 UNP P00644 HIS 164 ENGINEERED MUTATION SEQADV 3QOL ALA A 128 UNP P00644 SER 168 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR GLU LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET CA A 150 1 HET THP A 151 25 HETNAM CA CALCIUM ION HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE FORMUL 2 CA CA 2+ FORMUL 3 THP C10 H16 N2 O11 P2 FORMUL 4 HOH *76(H2 O) HELIX 1 1 TYR A 54 ALA A 69 1 16 HELIX 2 2 VAL A 99 GLN A 106 1 8 HELIX 3 3 HIS A 121 GLU A 135 1 15 HELIX 4 4 LEU A 137 SER A 141 5 5 SHEET 1 A 7 LYS A 97 MET A 98 0 SHEET 2 A 7 GLY A 88 ALA A 94 -1 N ALA A 94 O LYS A 97 SHEET 3 A 7 ILE A 72 GLU A 75 -1 N GLU A 75 O TYR A 91 SHEET 4 A 7 GLU A 10 ALA A 17 -1 N GLU A 10 O VAL A 74 SHEET 5 A 7 THR A 22 TYR A 27 -1 O MET A 26 N THR A 13 SHEET 6 A 7 GLN A 30 LEU A 36 -1 O PHE A 34 N GLU A 23 SHEET 7 A 7 GLY A 88 ALA A 94 1 O GLY A 88 N ARG A 35 SHEET 1 B 2 VAL A 39 ASP A 40 0 SHEET 2 B 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 LINK OD2 ASP A 21 CA CA A 150 1555 1555 2.97 LINK OD1 ASP A 40 CA CA A 150 1555 1555 2.79 LINK O THR A 41 CA CA A 150 1555 1555 2.75 LINK OE2 GLU A 43 CA CA A 150 1555 1555 3.03 LINK CA CA A 150 O5P THP A 151 1555 1555 3.14 LINK CA CA A 150 O HOH A 157 1555 1555 2.78 LINK CA CA A 150 O HOH A 167 1555 1555 3.04 SITE 1 AC1 7 ASP A 21 ASP A 40 THR A 41 GLU A 43 SITE 2 AC1 7 THP A 151 HOH A 157 HOH A 167 SITE 1 AC2 18 ARG A 35 ASP A 40 LYS A 84 TYR A 85 SITE 2 AC2 18 ARG A 87 LEU A 89 TYR A 113 TYR A 115 SITE 3 AC2 18 LYS A 127 CA A 150 HOH A 156 HOH A 157 SITE 4 AC2 18 HOH A 159 HOH A 162 HOH A 173 HOH A 190 SITE 5 AC2 18 HOH A 195 HOH A 220 CRYST1 31.033 60.453 37.626 90.00 94.44 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032224 0.000000 0.002502 0.00000 SCALE2 0.000000 0.016542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026657 0.00000