HEADER OXIDOREDUCTASE 13-FEB-11 3QPI TITLE CRYSTAL STRUCTURE OF DIMERIC CHLORITE DISMUTASES FROM NITROBACTER TITLE 2 WINOGRADSKYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLORITE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-183; COMPND 5 EC: 1.13.11.49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROBACTER WINOGRADSKYI; SOURCE 3 ORGANISM_TAXID: 323098; SOURCE 4 STRAIN: NB-255 / ATCC 25391; SOURCE 5 GENE: NWI_2442; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21B(+) KEYWDS OXYGEN, OXIDOREDUCTASE, CHLORITE O(2)-LYASE, CYTOPLASMA, CHLORITE EXPDTA X-RAY DIFFRACTION AUTHOR G.MLYNEK,B.SJOEBLOM,J.KOSTAN,S.FUEREDER,F.MAIXNER,P.G.FURTMUELLER, AUTHOR 2 O.OBINGER,M.WAGNER,H.DAIMS,K.DJINOVIC-CARUGO REVDAT 4 21-FEB-24 3QPI 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3QPI 1 REMARK REVDAT 2 29-FEB-12 3QPI 1 JRNL VERSN REVDAT 1 06-JUL-11 3QPI 0 JRNL AUTH G.MLYNEK,B.SJOBLOM,J.KOSTAN,S.FUREDER,F.MAIXNER,K.GYSEL, JRNL AUTH 2 P.G.FURTMULLER,C.OBINGER,M.WAGNER,H.DAIMS,K.DJINOVIC-CARUGO JRNL TITL UNEXPECTED DIVERSITY OF CHLORITE DISMUTASES: A CATALYTICALLY JRNL TITL 2 EFFICIENT DIMERIC ENZYME FROM NITROBACTER WINOGRADSKYI. JRNL REF J.BACTERIOL. V. 193 2408 2011 JRNL REFN ISSN 0021-9193 JRNL PMID 21441524 JRNL DOI 10.1128/JB.01262-10 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 6.840 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9040 - 4.5234 1.00 2962 156 0.1861 0.2293 REMARK 3 2 4.5234 - 3.5908 1.00 2890 158 0.1479 0.1773 REMARK 3 3 3.5908 - 3.1370 1.00 2861 149 0.1659 0.2333 REMARK 3 4 3.1370 - 2.8502 1.00 2857 149 0.1873 0.2541 REMARK 3 5 2.8502 - 2.6460 1.00 2856 148 0.1786 0.2561 REMARK 3 6 2.6460 - 2.4900 1.00 2858 147 0.1930 0.2671 REMARK 3 7 2.4900 - 2.3653 1.00 2833 153 0.2133 0.2385 REMARK 3 8 2.3653 - 2.2623 1.00 2841 148 0.2308 0.2561 REMARK 3 9 2.2623 - 2.1752 1.00 2831 149 0.2799 0.3020 REMARK 3 10 2.1752 - 2.1002 0.99 2830 149 0.3581 0.3711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.650 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01290 REMARK 3 B22 (A**2) : 0.01290 REMARK 3 B33 (A**2) : 1.27940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2900 REMARK 3 ANGLE : 1.337 3968 REMARK 3 CHIRALITY : 0.069 417 REMARK 3 PLANARITY : 0.005 495 REMARK 3 DIHEDRAL : 14.247 1009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:22) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7862 62.7324 12.3672 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.2249 REMARK 3 T33: 0.0203 T12: 0.0086 REMARK 3 T13: -0.0148 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 0.0175 L22: 0.0264 REMARK 3 L33: 0.2162 L12: 0.0186 REMARK 3 L13: -0.0175 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0236 S13: 0.0136 REMARK 3 S21: -0.0566 S22: -0.0092 S23: -0.0227 REMARK 3 S31: 0.0161 S32: 0.0260 S33: 0.2019 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 23:40) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6796 58.6263 10.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.2301 REMARK 3 T33: 0.5464 T12: -0.0310 REMARK 3 T13: 0.0495 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.5216 L22: 0.7392 REMARK 3 L33: 1.6349 L12: 0.1837 REMARK 3 L13: -0.4178 L23: -0.6340 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.2513 S13: -0.1478 REMARK 3 S21: -0.1859 S22: 0.0866 S23: 0.1675 REMARK 3 S31: 0.3001 S32: -0.1868 S33: 0.0093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 41:59) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9796 52.7529 15.5203 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.2088 REMARK 3 T33: 0.5408 T12: 0.0176 REMARK 3 T13: 0.0351 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5979 L22: 3.6480 REMARK 3 L33: 6.2621 L12: -0.1879 REMARK 3 L13: 0.6187 L23: -4.6852 REMARK 3 S TENSOR REMARK 3 S11: 0.1817 S12: 0.1454 S13: 0.0852 REMARK 3 S21: -0.1658 S22: 0.2748 S23: 0.2951 REMARK 3 S31: 0.1894 S32: -0.2357 S33: -0.3725 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 60:109) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7072 52.8144 27.5571 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.1913 REMARK 3 T33: 0.5259 T12: -0.0171 REMARK 3 T13: -0.0091 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.0739 L22: 1.2627 REMARK 3 L33: 0.8430 L12: -0.1128 REMARK 3 L13: 0.3348 L23: -0.9861 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.0393 S13: -0.0099 REMARK 3 S21: 0.1036 S22: -0.1728 S23: -0.2119 REMARK 3 S31: -0.0434 S32: 0.0506 S33: 0.1236 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 110:120) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8325 56.1266 31.6354 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.2535 REMARK 3 T33: 0.5715 T12: -0.0739 REMARK 3 T13: -0.0699 T23: 0.0897 REMARK 3 L TENSOR REMARK 3 L11: 5.5502 L22: 2.3548 REMARK 3 L33: 2.9796 L12: 1.6360 REMARK 3 L13: -0.5315 L23: 1.0459 REMARK 3 S TENSOR REMARK 3 S11: -0.0828 S12: -0.2729 S13: -0.1425 REMARK 3 S21: 0.0257 S22: -0.1781 S23: -0.1219 REMARK 3 S31: -0.0896 S32: 0.1748 S33: 0.1737 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 121:157) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6216 59.8221 22.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1750 REMARK 3 T33: 0.5195 T12: -0.0124 REMARK 3 T13: -0.0043 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.0999 L22: 1.3642 REMARK 3 L33: 1.0850 L12: 0.1750 REMARK 3 L13: -0.2392 L23: -0.1152 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: -0.0390 S13: 0.0179 REMARK 3 S21: 0.1351 S22: -0.0504 S23: -0.1001 REMARK 3 S31: -0.0448 S32: 0.1141 S33: -0.0213 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 158:182) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6173 58.4313 18.0104 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.2273 REMARK 3 T33: 0.6085 T12: -0.0038 REMARK 3 T13: 0.0388 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.5471 L22: 0.4222 REMARK 3 L33: 0.7479 L12: 0.0990 REMARK 3 L13: 0.4059 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: 0.0472 S13: -0.0708 REMARK 3 S21: 0.0271 S22: -0.1491 S23: -0.1189 REMARK 3 S31: 0.0517 S32: 0.1009 S33: 0.1579 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 2:12) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8579 27.6735 13.2079 REMARK 3 T TENSOR REMARK 3 T11: 0.6223 T22: 0.3300 REMARK 3 T33: 0.4964 T12: -0.0075 REMARK 3 T13: -0.1899 T23: -0.0772 REMARK 3 L TENSOR REMARK 3 L11: 2.4979 L22: 1.6268 REMARK 3 L33: 5.4856 L12: -2.0047 REMARK 3 L13: -0.0711 L23: 0.3700 REMARK 3 S TENSOR REMARK 3 S11: 0.2924 S12: 0.0595 S13: -0.4223 REMARK 3 S21: -0.0110 S22: -0.0771 S23: 0.1778 REMARK 3 S31: 0.4002 S32: -0.3737 S33: -0.1737 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 13:40) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5626 24.6943 19.6504 REMARK 3 T TENSOR REMARK 3 T11: 0.3670 T22: 0.2728 REMARK 3 T33: 0.6273 T12: -0.0472 REMARK 3 T13: -0.0932 T23: -0.1143 REMARK 3 L TENSOR REMARK 3 L11: 0.9163 L22: 1.9477 REMARK 3 L33: 1.1320 L12: 0.0937 REMARK 3 L13: -0.6244 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.2489 S13: -0.2372 REMARK 3 S21: -0.5262 S22: -0.0013 S23: 0.3872 REMARK 3 S31: 0.2593 S32: -0.3054 S33: -0.0383 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 41:64) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6541 34.4032 22.5562 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.1764 REMARK 3 T33: 0.6541 T12: -0.0093 REMARK 3 T13: -0.0229 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 3.4773 L22: 1.7733 REMARK 3 L33: 1.3344 L12: 2.4731 REMARK 3 L13: 0.4545 L23: 0.4550 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.0723 S13: 0.2631 REMARK 3 S21: -0.3367 S22: -0.1625 S23: 0.1963 REMARK 3 S31: 0.0745 S32: -0.1012 S33: 0.2536 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 65:97) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9380 26.1531 25.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.1564 REMARK 3 T33: 0.4129 T12: 0.0479 REMARK 3 T13: -0.0409 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 1.0073 L22: 0.4989 REMARK 3 L33: 0.8513 L12: 0.1117 REMARK 3 L13: -0.1478 L23: -0.6514 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.1904 S13: -0.1683 REMARK 3 S21: -0.3573 S22: -0.1565 S23: -0.0995 REMARK 3 S31: 0.2552 S32: 0.0275 S33: 0.1173 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 98:113) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4562 37.6741 38.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2445 REMARK 3 T33: 0.4058 T12: -0.0077 REMARK 3 T13: -0.0629 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.5043 L22: 2.0113 REMARK 3 L33: 3.7377 L12: -0.4097 REMARK 3 L13: -0.5964 L23: -0.4005 REMARK 3 S TENSOR REMARK 3 S11: -0.1810 S12: -0.1088 S13: 0.0524 REMARK 3 S21: 0.2471 S22: 0.1094 S23: -0.1252 REMARK 3 S31: -0.3031 S32: 0.0527 S33: 0.0480 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 114:151) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4152 26.1274 25.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.1510 REMARK 3 T33: 0.4917 T12: 0.0152 REMARK 3 T13: 0.0013 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.4018 L22: 1.2438 REMARK 3 L33: 1.0780 L12: 0.1315 REMARK 3 L13: -0.0838 L23: 0.3055 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.0163 S13: -0.1861 REMARK 3 S21: -0.3862 S22: -0.0389 S23: -0.0376 REMARK 3 S31: 0.1450 S32: 0.0805 S33: -0.0050 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 152:182) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1056 23.9499 32.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.1887 REMARK 3 T33: 0.0010 T12: 0.0099 REMARK 3 T13: -0.0019 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.1294 L22: 0.8504 REMARK 3 L33: 1.0073 L12: -0.2339 REMARK 3 L13: -0.0719 L23: -0.0968 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.1385 S13: -0.0913 REMARK 3 S21: 0.1487 S22: -0.0353 S23: -0.0130 REMARK 3 S31: 0.1180 S32: 0.0468 S33: -0.1890 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.278 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 53.6 MM NA2HPO4, 846.4 MM NAH2PO4, PH REMARK 280 7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.56000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.28000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS HAVE CONFIRMED THE BIOLOGICAL UNIT BY PERFORMING REMARK 300 SIZE EXCLUSION COLUMN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 41 REMARK 465 GLY A 42 REMARK 465 ASP A 43 REMARK 465 THR A 44 REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 ILE A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 41 REMARK 465 GLY B 42 REMARK 465 ASP B 43 REMARK 465 THR B 44 REMARK 465 SER B 45 REMARK 465 ALA B 46 REMARK 465 THR B 47 REMARK 465 THR B 48 REMARK 465 ALA B 182 REMARK 465 ILE B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 110 O HOH B 301 2.02 REMARK 500 O HOH A 287 O HOH A 304 2.15 REMARK 500 O HOH A 193 O HOH A 341 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 22 -62.33 -127.04 REMARK 500 SER A 26 -159.96 -85.88 REMARK 500 SER B 11 123.89 94.96 REMARK 500 SER B 18 145.42 -173.42 REMARK 500 VAL B 22 -67.33 -124.61 REMARK 500 SER B 26 -163.44 -79.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HEM A1001 NA 90.4 REMARK 620 3 HEM A1001 NB 94.7 82.4 REMARK 620 4 HEM A1001 NC 100.1 166.4 88.0 REMARK 620 5 HEM A1001 ND 94.0 89.2 167.9 98.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HEM B1001 NA 99.5 REMARK 620 3 HEM B1001 NB 100.0 89.9 REMARK 620 4 HEM B1001 NC 92.9 167.6 88.7 REMARK 620 5 HEM B1001 ND 91.5 91.2 168.1 87.6 REMARK 620 6 HOH B 202 O 170.9 82.8 88.8 84.8 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 1001 DBREF 3QPI A 1 183 UNP Q3SPU6 Q3SPU6_NITWN 1 183 DBREF 3QPI B 1 183 UNP Q3SPU6 Q3SPU6_NITWN 1 183 SEQADV 3QPI HIS A 184 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 185 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 186 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 187 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 188 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 189 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 184 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 185 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 186 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 187 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 188 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 189 UNP Q3SPU6 EXPRESSION TAG SEQRES 1 A 189 MET THR PHE THR VAL PHE THR GLY GLY ASP SER GLY ALA SEQRES 2 A 189 TRP SER ILE LEU SER VAL ALA PRO VAL ILE GLY GLU SER SEQRES 3 A 189 LEU MET ALA ALA SER HIS LEU ALA ILE ALA PRO SER LEU SEQRES 4 A 189 SER LEU GLY ASP THR SER ALA THR THR PRO TRP GLN LEU SEQRES 5 A 189 ARG GLY VAL ALA SER HIS ALA ARG TYR VAL GLU ARG ALA SEQRES 6 A 189 GLU LYS ILE ALA LEU THR SER VAL GLN ALA GLY LEU GLY SEQRES 7 A 189 ARG ASN GLU ALA THR ARG ALA ALA LEU ILE PRO ILE ARG SEQRES 8 A 189 LYS SER ALA ALA TRP TRP GLU MET THR GLN ASP GLU ARG SEQRES 9 A 189 ARG ALA ILE PHE GLU ASP LYS SER HIS HIS ILE ALA ALA SEQRES 10 A 189 SER LEU LYS TYR LEU PRO ALA ILE ALA ARG GLN LEU TYR SEQRES 11 A 189 HIS CYS ARG ASP ILE GLY GLU PRO PHE ASP PHE LEU THR SEQRES 12 A 189 TRP PHE GLU TYR ALA PRO GLU HIS ALA THR MET PHE GLU SEQRES 13 A 189 ASP LEU VAL GLY VAL LEU ARG ALA THR GLU GLU TRP THR SEQRES 14 A 189 TYR VAL GLU ARG GLU VAL ASP ILE ARG LEU ALA ARG ALA SEQRES 15 A 189 ILE HIS HIS HIS HIS HIS HIS SEQRES 1 B 189 MET THR PHE THR VAL PHE THR GLY GLY ASP SER GLY ALA SEQRES 2 B 189 TRP SER ILE LEU SER VAL ALA PRO VAL ILE GLY GLU SER SEQRES 3 B 189 LEU MET ALA ALA SER HIS LEU ALA ILE ALA PRO SER LEU SEQRES 4 B 189 SER LEU GLY ASP THR SER ALA THR THR PRO TRP GLN LEU SEQRES 5 B 189 ARG GLY VAL ALA SER HIS ALA ARG TYR VAL GLU ARG ALA SEQRES 6 B 189 GLU LYS ILE ALA LEU THR SER VAL GLN ALA GLY LEU GLY SEQRES 7 B 189 ARG ASN GLU ALA THR ARG ALA ALA LEU ILE PRO ILE ARG SEQRES 8 B 189 LYS SER ALA ALA TRP TRP GLU MET THR GLN ASP GLU ARG SEQRES 9 B 189 ARG ALA ILE PHE GLU ASP LYS SER HIS HIS ILE ALA ALA SEQRES 10 B 189 SER LEU LYS TYR LEU PRO ALA ILE ALA ARG GLN LEU TYR SEQRES 11 B 189 HIS CYS ARG ASP ILE GLY GLU PRO PHE ASP PHE LEU THR SEQRES 12 B 189 TRP PHE GLU TYR ALA PRO GLU HIS ALA THR MET PHE GLU SEQRES 13 B 189 ASP LEU VAL GLY VAL LEU ARG ALA THR GLU GLU TRP THR SEQRES 14 B 189 TYR VAL GLU ARG GLU VAL ASP ILE ARG LEU ALA ARG ALA SEQRES 15 B 189 ILE HIS HIS HIS HIS HIS HIS HET HEM A1001 43 HET HEM B1001 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *282(H2 O) HELIX 1 1 GLU A 63 GLN A 74 1 12 HELIX 2 2 SER A 93 MET A 99 1 7 HELIX 3 3 THR A 100 GLU A 109 1 10 HELIX 4 4 SER A 118 LEU A 122 5 5 HELIX 5 5 ARG A 133 GLY A 136 5 4 HELIX 6 6 ALA A 148 GLU A 150 5 3 HELIX 7 7 HIS A 151 ALA A 164 1 14 HELIX 8 8 THR A 165 THR A 169 5 5 HELIX 9 9 GLU B 63 GLN B 74 1 12 HELIX 10 10 SER B 93 MET B 99 1 7 HELIX 11 11 THR B 100 GLU B 109 1 10 HELIX 12 12 ILE B 115 LEU B 122 5 8 HELIX 13 13 ALA B 148 GLU B 150 5 3 HELIX 14 14 HIS B 151 ALA B 164 1 14 HELIX 15 15 THR B 165 THR B 169 5 5 SHEET 1 A 8 TRP A 50 GLY A 54 0 SHEET 2 A 8 THR A 4 GLY A 9 -1 N PHE A 6 O LEU A 52 SHEET 3 A 8 HIS A 32 PRO A 37 -1 O ALA A 36 N VAL A 5 SHEET 4 A 8 TRP A 14 ILE A 23 -1 N TRP A 14 O LEU A 33 SHEET 5 A 8 VAL A 171 ARG A 181 -1 O ARG A 178 N SER A 18 SHEET 6 A 8 ARG A 84 LYS A 92 -1 N ALA A 85 O LEU A 179 SHEET 7 A 8 PHE A 141 TYR A 147 -1 O THR A 143 N ILE A 88 SHEET 8 A 8 ALA A 126 HIS A 131 -1 N ALA A 126 O GLU A 146 SHEET 1 B 8 TRP B 50 GLY B 54 0 SHEET 2 B 8 THR B 4 GLY B 9 -1 N THR B 4 O GLY B 54 SHEET 3 B 8 HIS B 32 PRO B 37 -1 O HIS B 32 N GLY B 9 SHEET 4 B 8 TRP B 14 ILE B 23 -1 N TRP B 14 O LEU B 33 SHEET 5 B 8 VAL B 171 ALA B 180 -1 O ALA B 180 N SER B 15 SHEET 6 B 8 ARG B 84 LYS B 92 -1 N ALA B 85 O LEU B 179 SHEET 7 B 8 PHE B 141 TYR B 147 -1 O TYR B 147 N ARG B 84 SHEET 8 B 8 ALA B 126 HIS B 131 -1 N ALA B 126 O GLU B 146 LINK NE2 HIS A 114 FE HEM A1001 1555 1555 2.19 LINK NE2 HIS B 114 FE HEM B1001 1555 1555 2.09 LINK O HOH B 202 FE HEM B1001 1555 1555 2.27 CISPEP 1 LEU A 122 PRO A 123 0 6.55 CISPEP 2 LEU B 122 PRO B 123 0 3.13 SITE 1 AC1 21 ARG A 60 TYR A 61 VAL A 62 LEU A 70 SITE 2 AC1 21 LYS A 92 PHE A 108 HIS A 114 ILE A 115 SITE 3 AC1 21 SER A 118 ARG A 127 PHE A 141 THR A 143 SITE 4 AC1 21 PHE A 145 LEU A 158 LEU A 162 TRP A 168 SITE 5 AC1 21 HOH A 200 HOH A 258 HOH A 286 HOH A 306 SITE 6 AC1 21 HOH A 307 SITE 1 AC2 23 ALA B 59 ARG B 60 TYR B 61 VAL B 62 SITE 2 AC2 23 LYS B 92 TRP B 96 PHE B 108 HIS B 114 SITE 3 AC2 23 ILE B 115 SER B 118 ARG B 127 PHE B 141 SITE 4 AC2 23 THR B 143 PHE B 145 LEU B 158 LEU B 162 SITE 5 AC2 23 TRP B 168 HOH B 202 HOH B 204 HOH B 218 SITE 6 AC2 23 HOH B 285 HOH B 287 HOH B 292 CRYST1 102.620 102.620 49.120 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020358 0.00000