HEADER OXIDOREDUCTASE 15-FEB-11 3QQ5 TITLE CRYSTAL STRUCTURE OF THE [FEFE]-HYDROGENASE MATURATION PROTEIN HYDF COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL GTP-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA NEAPOLITANA; SOURCE 3 ORGANISM_TAXID: 309803; SOURCE 4 STRAIN: ATCC 49049 / DSM 4359 / NS-E; SOURCE 5 GENE: CTN_0227; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B/TNHYDF(D1-36) KEYWDS HYDROGENASE, H-CLUSTER, HYDA MATURATION, GTP-BINDING DOMAIN, KEYWDS 2 MATURATION ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CENDRON,P.BERTO,S.D'ADAMO,F.VALLESE,C.GOVONI,M.C.POSEWITZ, AUTHOR 2 G.M.GIACOMETTI,P.COSTANTINI,G.ZANOTTI REVDAT 4 06-NOV-24 3QQ5 1 SEQADV REVDAT 3 11-JAN-12 3QQ5 1 JRNL REVDAT 2 23-NOV-11 3QQ5 1 JRNL REVDAT 1 16-NOV-11 3QQ5 0 JRNL AUTH L.CENDRON,P.BERTO,S.D'ADAMO,F.VALLESE,C.GOVONI,M.C.POSEWITZ, JRNL AUTH 2 G.M.GIACOMETTI,P.COSTANTINI,G.ZANOTTI JRNL TITL CRYSTAL STRUCTURE OF HYDF SCAFFOLD PROTEIN PROVIDES INSIGHTS JRNL TITL 2 INTO [FEFE]-HYDROGENASE MATURATION. JRNL REF J.BIOL.CHEM. V. 286 43944 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 22057316 JRNL DOI 10.1074/JBC.M111.281956 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2760504.530 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 913 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2736 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM SIGMAA (A) : 0.67 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.61 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.010 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 108.1 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3QQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-10; 27-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-1; ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9795, 0.9769; 0.9765 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 79.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 31.90 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 32.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PGA-LM (POLY-L-GLUTAMIC ACID, LOW REMARK 280 MOLECULAR WEIGHT RANGE), 0.2 M NA-FORMATE, 0.1 M TRIS BUFFER, PH REMARK 280 7.8, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 138.25900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 138.25900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 138.25900 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 138.25900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 VAL A -14 REMARK 465 PRO A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 MET A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 ASP A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A -2 REMARK 465 PRO A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 32 REMARK 465 ASN A 33 REMARK 465 VAL A 34 REMARK 465 SER A 35 REMARK 465 ILE A 36 REMARK 465 VAL A 37 REMARK 465 SER A 38 REMARK 465 ASP A 39 REMARK 465 TYR A 40 REMARK 465 ALA A 41 REMARK 465 GLY A 42 REMARK 465 THR A 43 REMARK 465 THR A 44 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A -1 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 0 OG1 CG2 REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 3 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 0 147.62 162.74 REMARK 500 PHE A 8 66.43 29.88 REMARK 500 ARG A 18 -169.39 -67.90 REMARK 500 ASN A 19 -47.90 175.39 REMARK 500 LYS A 22 -44.18 -139.05 REMARK 500 MET A 26 -125.42 -55.96 REMARK 500 ASN A 27 -51.06 -13.40 REMARK 500 ALA A 28 -144.36 -65.07 REMARK 500 LEU A 29 61.13 13.90 REMARK 500 ASP A 46 -38.86 -142.94 REMARK 500 MET A 52 -158.28 -154.09 REMARK 500 ILE A 57 -48.37 -155.82 REMARK 500 THR A 65 100.44 -51.94 REMARK 500 PRO A 66 -100.46 -51.42 REMARK 500 LEU A 77 -75.60 -46.24 REMARK 500 ARG A 78 46.88 120.72 REMARK 500 VAL A 79 -80.95 -21.95 REMARK 500 ALA A 82 -72.07 -68.19 REMARK 500 ARG A 83 -50.56 -26.16 REMARK 500 ALA A 89 142.31 -27.58 REMARK 500 CYS A 91 160.45 172.89 REMARK 500 SER A 98 -159.48 -97.50 REMARK 500 GLU A 115 56.78 39.52 REMARK 500 VAL A 122 -137.55 -152.68 REMARK 500 ASN A 123 68.91 178.38 REMARK 500 LYS A 124 98.22 -61.24 REMARK 500 ASP A 126 72.68 -111.78 REMARK 500 VAL A 127 -3.31 -147.24 REMARK 500 LYS A 131 94.11 155.94 REMARK 500 GLU A 133 -21.27 -37.25 REMARK 500 LEU A 135 -76.91 -52.96 REMARK 500 LYS A 136 -6.70 -50.77 REMARK 500 TYR A 139 -96.64 -49.52 REMARK 500 SER A 141 -158.44 40.37 REMARK 500 ARG A 142 -83.41 -127.23 REMARK 500 TYR A 143 23.57 45.68 REMARK 500 GLU A 144 23.90 32.02 REMARK 500 LEU A 149 -165.54 -165.22 REMARK 500 VAL A 150 163.38 176.04 REMARK 500 ALA A 152 35.76 -76.17 REMARK 500 LEU A 153 61.77 11.39 REMARK 500 LYS A 155 -55.06 -1.06 REMARK 500 LYS A 156 22.08 -74.14 REMARK 500 PHE A 158 40.98 -71.52 REMARK 500 ASP A 159 -93.50 -111.53 REMARK 500 LYS A 163 -91.62 -53.98 REMARK 500 LEU A 169 -179.58 -44.60 REMARK 500 PRO A 170 -113.69 -49.69 REMARK 500 GLU A 174 78.36 33.84 REMARK 500 TYR A 177 -8.73 -55.15 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FEH RELATED DB: PDB REMARK 900 FE-ONLY HYDROGENASE FROM CLOSTRIDIUM PASTEURIANUM REMARK 900 RELATED ID: 3CIW RELATED DB: PDB REMARK 900 [FEFE]-HYDROGENASE MATURASE HYDE REMARK 900 RELATED ID: 3LX4 RELATED DB: PDB REMARK 900 STRUCTURE OF HYDA(DELTAEFG) [FEFE]-HYDROGENASE DBREF 3QQ5 A 2 398 UNP B9KBK7 B9KBK7_THENN 37 433 SEQADV 3QQ5 HIS A -24 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 HIS A -23 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 HIS A -22 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 HIS A -21 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 HIS A -20 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 HIS A -19 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 SER A -18 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 SER A -17 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 GLY A -16 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 LEU A -15 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 VAL A -14 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 PRO A -13 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 ARG A -12 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 GLY A -11 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 SER A -10 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 HIS A -9 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 MET A -8 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 LEU A -7 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 GLU A -6 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 ASP A -5 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 PRO A -4 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 ARG A -3 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 ARG A -2 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 TYR A -1 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 THR A 0 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 MET A 1 UNP B9KBK7 EXPRESSION TAG SEQADV 3QQ5 ALA A 250 UNP B9KBK7 VAL 285 CONFLICT SEQRES 1 A 423 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 423 GLY SER HIS MET LEU GLU ASP PRO ARG ARG TYR THR MET SEQRES 3 A 423 ARG LEU PRO ASP ALA GLY PHE ARG ARG TYR ILE VAL VAL SEQRES 4 A 423 ALA GLY ARG ARG ASN VAL GLY LYS SER SER PHE MET ASN SEQRES 5 A 423 ALA LEU VAL GLY GLN ASN VAL SER ILE VAL SER ASP TYR SEQRES 6 A 423 ALA GLY THR THR THR ASP PRO VAL TYR LYS SER MET GLU SEQRES 7 A 423 LEU HIS PRO ILE GLY PRO VAL THR LEU VAL ASP THR PRO SEQRES 8 A 423 GLY LEU ASP ASP VAL GLY GLU LEU GLY ARG LEU ARG VAL SEQRES 9 A 423 GLU LYS ALA ARG ARG VAL PHE TYR ARG ALA ASP CYS GLY SEQRES 10 A 423 ILE LEU VAL THR ASP SER ALA PRO THR PRO TYR GLU ASP SEQRES 11 A 423 ASP VAL VAL ASN LEU PHE LYS GLU MET GLU ILE PRO PHE SEQRES 12 A 423 VAL VAL VAL VAL ASN LYS ILE ASP VAL LEU GLY GLU LYS SEQRES 13 A 423 ALA GLU GLU LEU LYS GLY LEU TYR GLU SER ARG TYR GLU SEQRES 14 A 423 ALA LYS VAL LEU LEU VAL SER ALA LEU GLN LYS LYS GLY SEQRES 15 A 423 PHE ASP ASP ILE GLY LYS THR ILE SER GLU ILE LEU PRO SEQRES 16 A 423 GLY ASP GLU GLU ILE PRO TYR LEU GLY ASP LEU ILE ASP SEQRES 17 A 423 GLY GLY ASP LEU VAL ILE LEU VAL VAL PRO ILE ASP LEU SEQRES 18 A 423 GLY ALA PRO LYS GLY ARG LEU ILE MET PRO GLN VAL HIS SEQRES 19 A 423 ALA ILE ARG GLU ALA LEU ASP ARG GLU ALA ILE ALA LEU SEQRES 20 A 423 VAL VAL LYS GLU ARG GLU LEU ARG TYR VAL MET GLU ASN SEQRES 21 A 423 ILE GLY MET LYS PRO LYS LEU VAL ILE THR ASP SER GLN SEQRES 22 A 423 VAL ALA MET LYS VAL ALA SER ASP VAL PRO GLU ASP VAL SEQRES 23 A 423 GLU LEU THR THR PHE SER ILE VAL GLU SER ARG TYR ARG SEQRES 24 A 423 GLY ASP LEU ALA TYR PHE VAL GLU SER VAL ARG LYS ILE SEQRES 25 A 423 GLU GLU LEU GLU ASP GLY ASP THR VAL VAL ILE MET GLU SEQRES 26 A 423 GLY CYS THR HIS ARG PRO LEU THR GLU ASP ILE GLY ARG SEQRES 27 A 423 VAL LYS ILE PRO ARG TRP LEU VAL ASN HIS THR GLY ALA SEQRES 28 A 423 GLN LEU ASN PHE LYS VAL ILE ALA GLY LYS ASP PHE PRO SEQRES 29 A 423 ASP LEU GLU GLU ILE GLU ASN ALA LYS LEU ILE ILE HIS SEQRES 30 A 423 CYS GLY GLY CYS ILE LEU ASN ARG SER ALA MET MET ARG SEQRES 31 A 423 ARG VAL ARG MET ALA LYS ARG LEU GLY ILE PRO MET THR SEQRES 32 A 423 ASN TYR GLY VAL THR ILE SER TYR LEU HIS GLY VAL LEU SEQRES 33 A 423 GLU ARG ALA ILE ARG PRO PHE HELIX 1 1 ARG A 78 TYR A 87 1 10 HELIX 2 2 THR A 101 MET A 114 1 14 HELIX 3 3 GLU A 133 TYR A 139 1 7 HELIX 4 4 ASP A 160 LEU A 169 1 10 HELIX 5 5 ILE A 204 ARG A 217 1 14 HELIX 6 6 GLU A 228 ILE A 236 1 9 HELIX 7 7 GLN A 248 ASP A 256 1 9 HELIX 8 8 PHE A 266 ARG A 274 1 9 HELIX 9 9 LEU A 277 LYS A 286 1 10 HELIX 10 10 VAL A 314 THR A 324 1 11 HELIX 11 11 ASP A 340 GLU A 345 1 6 HELIX 12 12 ASN A 359 LEU A 373 1 15 HELIX 13 13 TYR A 380 LEU A 387 1 8 SHEET 1 A 5 TYR A 49 LEU A 54 0 SHEET 2 A 5 GLY A 58 ASP A 64 -1 O VAL A 60 N MET A 52 SHEET 3 A 5 ARG A 10 ALA A 15 1 N VAL A 14 O VAL A 63 SHEET 4 A 5 CYS A 91 VAL A 95 1 O ILE A 93 N VAL A 13 SHEET 5 A 5 PHE A 118 VAL A 121 1 O VAL A 121 N LEU A 94 SHEET 1 B 2 VAL A 188 VAL A 191 0 SHEET 2 B 2 ILE A 220 VAL A 223 1 O LEU A 222 N ILE A 189 SHEET 1 C 4 ASN A 329 ILE A 333 0 SHEET 2 C 4 THR A 295 MET A 299 1 N VAL A 296 O ASN A 329 SHEET 3 C 4 LEU A 349 HIS A 352 1 O ILE A 351 N VAL A 297 SHEET 4 C 4 MET A 377 ASN A 379 1 O THR A 378 N ILE A 350 SSBOND 1 CYS A 302 CYS A 302 1555 3656 1.98 SSBOND 2 CYS A 353 CYS A 356 1555 1555 2.03 CISPEP 1 HIS A 55 PRO A 56 0 0.02 CISPEP 2 ALA A 198 PRO A 199 0 -0.56 CISPEP 3 VAL A 257 PRO A 258 0 -0.55 CRYST1 138.259 138.259 138.259 90.00 90.00 90.00 P 2 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007233 0.00000