HEADER VIRAL PROTEIN 15-FEB-11 3QQB TITLE CRYSTAL STRUCTURE OF HA2 R106H MUTANT OF H2 HEMAGGLUTININ, NEUTRAL PH TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HA1 CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: HA2 CHAIN ECTODOMAIN; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 387161; SOURCE 4 STRAIN: A/JAPAN/305/1957 H2N2; SOURCE 5 GENE: HA, HEMAGGLUTININ; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-HT; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 13 ORGANISM_TAXID: 387161; SOURCE 14 STRAIN: A/JAPAN/305/1957 H2N2; SOURCE 15 GENE: HA, HEMAGGLUTININ; SOURCE 16 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-HT KEYWDS VIRAL ENVELOPE PROTEIN, HEMAGGLUTININ, VIRAL FUSION PROTEIN, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.XU,I.A.WILSON REVDAT 5 29-JUL-20 3QQB 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 08-NOV-17 3QQB 1 REMARK REVDAT 3 04-MAY-11 3QQB 1 JRNL REVDAT 2 16-MAR-11 3QQB 1 JRNL REVDAT 1 09-MAR-11 3QQB 0 JRNL AUTH R.XU,I.A.WILSON JRNL TITL STRUCTURAL CHARACTERIZATION OF AN EARLY FUSION INTERMEDIATE JRNL TITL 2 OF INFLUENZA VIRUS HEMAGGLUTININ. JRNL REF J.VIROL. V. 85 5172 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21367895 JRNL DOI 10.1128/JVI.02430-10 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2346 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : -1.60000 REMARK 3 B12 (A**2) : 0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.940 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4092 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5536 ; 1.472 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 6.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;34.798 ;25.178 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 699 ;13.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3109 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1774 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2735 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 435 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2453 ; 0.841 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3954 ; 1.563 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1639 ; 2.486 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1582 ; 4.115 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1630 -6.7360 35.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0651 REMARK 3 T33: 0.1570 T12: 0.0063 REMARK 3 T13: 0.0054 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.0525 L22: 0.2307 REMARK 3 L33: 0.6598 L12: -0.0450 REMARK 3 L13: -0.0655 L23: -0.1543 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: 0.0131 S13: -0.0375 REMARK 3 S21: -0.0147 S22: -0.0365 S23: 0.0098 REMARK 3 S31: -0.0529 S32: -0.0320 S33: 0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 172 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7410 -12.8510 -16.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1314 REMARK 3 T33: 0.0000 T12: 0.0371 REMARK 3 T13: -0.0001 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3619 L22: -0.0847 REMARK 3 L33: 4.5355 L12: 0.0103 REMARK 3 L13: 0.7269 L23: -0.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: 0.0476 S13: 0.0384 REMARK 3 S21: 0.0289 S22: -0.0077 S23: -0.0192 REMARK 3 S31: -0.1007 S32: -0.2329 S33: 0.0664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3000, 0.1M TRIS, PH 8.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.56800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 118.56800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 118.56800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 35.14400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -60.87119 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 70.28800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 436 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 545 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 549 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 327 REMARK 465 SER A 328 REMARK 465 ARG A 329 REMARK 465 ILE B 173 REMARK 465 LYS B 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 440 O HOH A 591 3655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 146 -158.26 -143.36 REMARK 500 GLN A 196 -47.47 55.59 REMARK 500 THR A 206 -163.96 -120.31 REMARK 500 TRP A 240 -0.73 72.12 REMARK 500 SER A 265 -148.45 -147.09 REMARK 500 ALA B 5 -60.14 -93.24 REMARK 500 ARG B 127 -133.81 44.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QQE RELATED DB: PDB REMARK 900 RELATED ID: 3QQI RELATED DB: PDB REMARK 900 RELATED ID: 3QQO RELATED DB: PDB DBREF 3QQB A 10 329 UNP C7S226 C7S226_I57A0 15 340 DBREF 3QQB B 1 174 UNP C7S226 C7S226_I57A0 341 514 SEQADV 3QQB PRO A 9 UNP C7S226 EXPRESSION TAG SEQADV 3QQB HIS B 106 UNP C7S226 ARG 446 ENGINEERED MUTATION SEQRES 1 A 327 PRO GLY ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SEQRES 2 A 327 SER THR GLU LYS VAL ASP THR ILE LEU GLU ARG ASN VAL SEQRES 3 A 327 THR VAL THR HIS ALA LYS ASP ILE LEU GLU LYS THR HIS SEQRES 4 A 327 ASN GLY LYS LEU CYS LYS LEU ASN GLY ILE PRO PRO LEU SEQRES 5 A 327 GLU LEU GLY ASP CYS SER ILE ALA GLY TRP LEU LEU GLY SEQRES 6 A 327 ASN PRO GLU CYS ASP ARG LEU LEU SER VAL PRO GLU TRP SEQRES 7 A 327 SER TYR ILE MET GLU LYS GLU ASN PRO ARG ASP GLY LEU SEQRES 8 A 327 CYS TYR PRO GLY SER PHE ASN ASP TYR GLU GLU LEU LYS SEQRES 9 A 327 HIS LEU LEU SER SER VAL LYS HIS PHE GLU LYS VAL LYS SEQRES 10 A 327 ILE LEU PRO LYS ASP ARG TRP THR GLN HIS THR THR THR SEQRES 11 A 327 GLY GLY SER ARG ALA CYS ALA VAL SER GLY ASN PRO SER SEQRES 12 A 327 PHE PHE ARG ASN MET VAL TRP LEU THR GLU LYS GLY SER SEQRES 13 A 327 ASN TYR PRO VAL ALA LYS GLY SER TYR ASN ASN THR SER SEQRES 14 A 327 GLY GLU GLN MET LEU ILE ILE TRP GLY VAL HIS HIS PRO SEQRES 15 A 327 ASN ASP GLU THR GLU GLN ARG THR LEU TYR GLN ASN VAL SEQRES 16 A 327 GLY THR TYR VAL SER VAL GLY THR SER THR LEU ASN LYS SEQRES 17 A 327 ARG SER THR PRO GLU ILE ALA THR ARG PRO LYS VAL ASN SEQRES 18 A 327 GLY GLN GLY GLY ARG MET GLU PHE SER TRP THR LEU LEU SEQRES 19 A 327 ASP MET TRP ASP THR ILE ASN PHE GLU SER THR GLY ASN SEQRES 20 A 327 LEU ILE ALA PRO GLU TYR GLY PHE LYS ILE SER LYS ARG SEQRES 21 A 327 GLY SER SER GLY ILE MET LYS THR GLU GLY THR LEU GLU SEQRES 22 A 327 ASN CYS GLU THR LYS CYS GLN THR PRO LEU GLY ALA ILE SEQRES 23 A 327 ASN THR THR LEU PRO PHE HIS ASN VAL HIS PRO LEU THR SEQRES 24 A 327 ILE GLY GLU CYS PRO LYS TYR VAL LYS SER GLU LYS LEU SEQRES 25 A 327 VAL LEU ALA THR GLY LEU ARG ASN VAL PRO GLN ILE GLU SEQRES 26 A 327 SER ARG SEQRES 1 B 174 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 174 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 174 SER ASN ASP GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 174 SER THR GLN LYS ALA PHE ASP GLY ILE THR ASN LYS VAL SEQRES 5 B 174 ASN SER VAL ILE GLU LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 174 VAL GLY LYS GLU PHE SER ASN LEU GLU ARG ARG LEU GLU SEQRES 7 B 174 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 174 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 174 GLU HIS THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 174 LEU TYR ASP LYS VAL ARG MET GLN LEU ARG ASP ASN VAL SEQRES 11 B 174 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 174 CYS ASP ASP GLU CYS MET ASN SER VAL LYS ASN GLY THR SEQRES 13 B 174 TYR ASP TYR PRO LYS TYR GLU GLU GLU SER LYS LEU ASN SEQRES 14 B 174 ARG ASN GLU ILE LYS MODRES 3QQB ASN A 169 ASN GLYCOSYLATION SITE MODRES 3QQB ASN A 33 ASN GLYCOSYLATION SITE MODRES 3QQB ASN B 154 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG A 332 14 HET EDO A 1 4 HET NAG B 175 14 HET PEG B 176 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 EDO C2 H6 O2 FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *540(H2 O) HELIX 1 1 SER A 65 GLY A 72 1 8 HELIX 2 2 ASN A 73 LEU A 80 5 8 HELIX 3 3 ASP A 104 SER A 113 1 10 HELIX 4 4 PRO A 122 TRP A 127 5 5 HELIX 5 5 ASP A 187 GLN A 196 1 10 HELIX 6 6 ASP B 37 MET B 59 1 23 HELIX 7 7 GLU B 74 ARG B 127 1 54 HELIX 8 8 ASP B 145 ASN B 154 1 10 HELIX 9 9 ASP B 158 GLU B 172 1 15 SHEET 1 A 5 GLY B 31 ALA B 36 0 SHEET 2 A 5 TYR B 22 ASN B 28 -1 N TYR B 24 O ALA B 35 SHEET 3 A 5 GLN A 12 TYR A 17 -1 N CYS A 14 O HIS B 25 SHEET 4 A 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 A 5 VAL B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 B 2 LYS A 25 VAL A 26 0 SHEET 2 B 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 C 2 ALA A 39 ASP A 41 0 SHEET 2 C 2 VAL A 315 ALA A 317 -1 O LEU A 316 N LYS A 40 SHEET 1 D 3 LEU A 43 GLU A 44 0 SHEET 2 D 3 PHE A 294 HIS A 295 1 O PHE A 294 N GLU A 44 SHEET 3 D 3 LYS A 307 TYR A 308 1 O LYS A 307 N HIS A 295 SHEET 1 E 2 LEU A 51 LEU A 53A 0 SHEET 2 E 2 LEU A 274 THR A 279 1 O GLU A 275 N LEU A 51 SHEET 1 F 3 LEU A 59 GLU A 60 0 SHEET 2 F 3 ILE A 87 GLU A 89 1 O MET A 88 N LEU A 59 SHEET 3 F 3 ILE A 267 LYS A 269 1 O MET A 268 N ILE A 87 SHEET 1 G 5 GLY A 100 PHE A 102 0 SHEET 2 G 5 ARG A 229 LEU A 237 1 O PHE A 232 N SER A 101 SHEET 3 G 5 MET A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 G 5 GLY A 257 ARG A 263 -1 O PHE A 258 N LEU A 177 SHEET 5 G 5 VAL A 115 VAL A 118 -1 N LYS A 116 O LYS A 262 SHEET 1 H 5 GLY A 100 PHE A 102 0 SHEET 2 H 5 ARG A 229 LEU A 237 1 O PHE A 232 N SER A 101 SHEET 3 H 5 MET A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 H 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 H 5 MET A 151 TRP A 153 -1 N VAL A 152 O ALA A 253 SHEET 1 I 2 SER A 136 VAL A 141 0 SHEET 2 I 2 ASN A 144 SER A 146 -1 O ASN A 144 N VAL A 141 SHEET 1 J 4 ALA A 164 ASN A 169 0 SHEET 2 J 4 THR A 242 SER A 247 -1 O SER A 247 N ALA A 164 SHEET 3 J 4 VAL A 202 GLY A 205 -1 N SER A 203 O GLU A 246 SHEET 4 J 4 ASN A 210 SER A 213 -1 O SER A 213 N VAL A 202 SHEET 1 K 3 GLY A 286 ILE A 288 0 SHEET 2 K 3 CYS A 281 THR A 283 -1 N CYS A 281 O ILE A 288 SHEET 3 K 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.08 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.11 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.11 SSBOND 4 CYS A 281 CYS A 305 1555 1555 2.11 SSBOND 5 CYS B 144 CYS B 148 1555 1555 2.09 LINK ND2 ASN A 33 C1 NAG A 332 1555 1555 1.45 LINK ND2 ASN A 169 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 154 C1 NAG B 175 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CRYST1 70.288 70.288 237.136 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014227 0.008214 0.000000 0.00000 SCALE2 0.000000 0.016428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004217 0.00000