HEADER CELL ADHESION 17-FEB-11 3QRB TITLE CRYSTAL STRUCTURE OF E-CADHERIN EC1-2 P5A P6A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CADHERIN 1 AND CADHERIN 2 DOMAINS, UNP RESIDUES 157-369; COMPND 5 SYNONYM: ARC-1, EPITHELIAL CADHERIN, E-CADHERIN, UVOMORULIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CADHERIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,L.SHAPIRO REVDAT 3 13-SEP-23 3QRB 1 REMARK SEQADV LINK REVDAT 2 09-DEC-15 3QRB 1 JRNL VERSN REVDAT 1 18-MAY-11 3QRB 0 JRNL AUTH J.VENDOME,S.POSY,X.JIN,F.BAHNA,G.AHLSEN,L.SHAPIRO,B.HONIG JRNL TITL MOLECULAR DESIGN PRINCIPLES UNDERLYING BETA-STRAND SWAPPING JRNL TITL 2 IN THE ADHESIVE DIMERIZATION OF CADHERINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 693 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21572446 JRNL DOI 10.1038/NSMB.2051 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 69888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 903 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.567 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3434 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4691 ; 1.324 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 6.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;36.971 ;26.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;13.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.231 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2609 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1553 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2336 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 692 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 26 ; 0.072 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 64 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2168 ; 0.596 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3559 ; 1.146 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 2.020 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1118 ; 3.492 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6307 -14.1377 30.5549 REMARK 3 T TENSOR REMARK 3 T11: 0.0027 T22: 0.0091 REMARK 3 T33: 0.0099 T12: 0.0000 REMARK 3 T13: 0.0025 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.0777 L22: 2.5836 REMARK 3 L33: 2.1974 L12: -1.2810 REMARK 3 L13: 0.3503 L23: -0.7201 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0749 S13: 0.0113 REMARK 3 S21: -0.0617 S22: -0.0393 S23: -0.0401 REMARK 3 S31: 0.0431 S32: 0.0858 S33: 0.0431 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8023 15.3777 20.7301 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0816 REMARK 3 T33: 0.0399 T12: 0.0660 REMARK 3 T13: 0.0085 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 5.3979 L22: 2.1164 REMARK 3 L33: 0.3657 L12: -3.0157 REMARK 3 L13: 0.7084 L23: -0.5024 REMARK 3 S TENSOR REMARK 3 S11: 0.2022 S12: 0.2813 S13: 0.0861 REMARK 3 S21: -0.1289 S22: -0.1966 S23: -0.0490 REMARK 3 S31: 0.0046 S32: -0.0127 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 61.1575 6.8888 7.9874 REMARK 3 T TENSOR REMARK 3 T11: 0.0116 T22: 0.0404 REMARK 3 T33: 0.0163 T12: -0.0204 REMARK 3 T13: 0.0025 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.7618 L22: 2.5363 REMARK 3 L33: 2.1539 L12: 1.4452 REMARK 3 L13: -0.3325 L23: -0.6619 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: -0.0662 S13: 0.0167 REMARK 3 S21: -0.0123 S22: -0.0532 S23: -0.0726 REMARK 3 S31: -0.1409 S32: 0.2641 S33: 0.0356 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 98 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7394 -24.8535 17.1608 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1121 REMARK 3 T33: 0.0538 T12: -0.1168 REMARK 3 T13: -0.0463 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 5.8562 L22: 2.6265 REMARK 3 L33: 0.5292 L12: 3.8249 REMARK 3 L13: -0.1900 L23: -0.1666 REMARK 3 S TENSOR REMARK 3 S11: 0.4025 S12: -0.4529 S13: -0.2919 REMARK 3 S21: 0.2485 S22: -0.3210 S23: -0.1459 REMARK 3 S31: 0.2170 S32: -0.1439 S33: -0.0815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73693 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1FF5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 10% ETHYLENE GLYCOL, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.59250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.29150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.59250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.29150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 108.05136 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.40319 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.18500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 215 O HOH B 482 1.83 REMARK 500 O HOH A 237 O HOH A 457 1.91 REMARK 500 O HOH A 737 O HOH B 264 1.95 REMARK 500 OE1 GLU B 54 O HOH B 825 2.03 REMARK 500 O HOH A 289 O HOH A 673 2.07 REMARK 500 O HOH A 464 O HOH A 535 2.11 REMARK 500 OG SER A 82 OD1 ASN A 84 2.14 REMARK 500 OG SER B 82 OD1 ASN B 84 2.17 REMARK 500 O HOH B 289 O HOH B 317 2.18 REMARK 500 O HOH A 319 O HOH A 549 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 43 -92.72 -115.76 REMARK 500 ALA A 70 -60.66 -99.16 REMARK 500 GLU A 156 41.51 -88.87 REMARK 500 LEU B 21 -74.57 -110.33 REMARK 500 ALA B 43 -88.19 -115.06 REMARK 500 GLU B 156 43.38 -87.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 92.4 REMARK 620 3 GLU A 69 OE1 86.4 93.5 REMARK 620 4 ASP A 103 OD2 91.0 157.3 109.0 REMARK 620 5 HOH A 287 O 90.7 78.6 171.5 79.0 REMARK 620 6 HOH A 288 O 170.8 94.0 86.6 85.7 97.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE2 108.7 REMARK 620 3 GLU A 69 OE1 85.9 50.3 REMARK 620 4 ASP A 100 OD1 83.5 77.2 118.8 REMARK 620 5 GLN A 101 O 81.9 156.8 152.9 83.8 REMARK 620 6 ASP A 103 OD1 87.9 119.8 75.2 162.8 80.3 REMARK 620 7 ASP A 136 OD1 163.1 87.8 102.7 104.4 84.1 80.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 106.9 REMARK 620 3 ASP A 134 OD2 153.5 88.5 REMARK 620 4 ASP A 134 OD1 143.9 94.0 52.0 REMARK 620 5 ASP A 136 OD2 74.7 80.6 130.2 80.3 REMARK 620 6 ASN A 143 O 78.9 173.8 85.3 82.0 103.2 REMARK 620 7 ASP A 195 OD2 77.4 91.2 80.9 132.4 147.0 88.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD1 92.6 REMARK 620 3 GLU B 69 OE1 89.0 88.6 REMARK 620 4 ASP B 103 OD2 92.2 160.3 110.6 REMARK 620 5 ASP B 103 OD1 92.1 154.6 66.5 44.1 REMARK 620 6 HOH B 533 O 87.4 83.7 171.3 77.4 121.5 REMARK 620 7 HOH B 537 O 173.5 92.5 87.1 84.3 81.6 97.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 69 OE2 110.6 REMARK 620 3 GLU B 69 OE1 88.3 50.6 REMARK 620 4 ASP B 100 OD1 84.4 79.0 122.1 REMARK 620 5 GLN B 101 O 82.0 155.9 153.1 82.1 REMARK 620 6 ASP B 103 OD1 88.7 119.2 74.3 161.9 80.4 REMARK 620 7 ASP B 136 OD1 162.4 85.9 98.2 105.5 84.9 77.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 102 OD1 REMARK 620 2 ASN B 104 O 106.7 REMARK 620 3 ASP B 134 OD2 155.4 87.6 REMARK 620 4 ASP B 134 OD1 143.7 91.4 52.3 REMARK 620 5 ASP B 136 OD2 73.3 80.2 129.9 79.4 REMARK 620 6 ASN B 143 O 80.9 172.4 85.2 82.3 102.7 REMARK 620 7 ASP B 195 OD2 79.6 91.3 80.2 132.2 147.7 89.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 1001 DBREF 3QRB A 1 213 UNP P09803 CADH1_MOUSE 157 369 DBREF 3QRB B 1 213 UNP P09803 CADH1_MOUSE 157 369 SEQADV 3QRB ALA A 5 UNP P09803 PRO 161 ENGINEERED MUTATION SEQADV 3QRB ALA A 6 UNP P09803 PRO 162 ENGINEERED MUTATION SEQADV 3QRB ALA B 5 UNP P09803 PRO 161 ENGINEERED MUTATION SEQADV 3QRB ALA B 6 UNP P09803 PRO 162 ENGINEERED MUTATION SEQRES 1 A 213 ASP TRP VAL ILE ALA ALA ILE SER CYS PRO GLU ASN GLU SEQRES 2 A 213 LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE LYS SER SEQRES 3 A 213 ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER ILE THR SEQRES 4 A 213 GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL PHE ILE SEQRES 5 A 213 ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLN PRO SEQRES 6 A 213 LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU TYR SER SEQRES 7 A 213 HIS ALA VAL SER SER ASN GLY GLU ALA VAL GLU ASP PRO SEQRES 8 A 213 MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN ASP ASN SEQRES 9 A 213 ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SER VAL SEQRES 10 A 213 ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET LYS VAL SEQRES 11 A 213 SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN SEQRES 12 A 213 ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP PRO GLU SEQRES 13 A 213 LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG ASP THR SEQRES 14 A 213 GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP ARG GLU SEQRES 15 A 213 SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP SEQRES 16 A 213 LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS ALA VAL SEQRES 17 A 213 ILE THR VAL LYS ASP SEQRES 1 B 213 ASP TRP VAL ILE ALA ALA ILE SER CYS PRO GLU ASN GLU SEQRES 2 B 213 LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE LYS SER SEQRES 3 B 213 ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER ILE THR SEQRES 4 B 213 GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL PHE ILE SEQRES 5 B 213 ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLN PRO SEQRES 6 B 213 LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU TYR SER SEQRES 7 B 213 HIS ALA VAL SER SER ASN GLY GLU ALA VAL GLU ASP PRO SEQRES 8 B 213 MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN ASP ASN SEQRES 9 B 213 ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SER VAL SEQRES 10 B 213 ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET LYS VAL SEQRES 11 B 213 SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN SEQRES 12 B 213 ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP PRO GLU SEQRES 13 B 213 LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG ASP THR SEQRES 14 B 213 GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP ARG GLU SEQRES 15 B 213 SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP SEQRES 16 B 213 LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS ALA VAL SEQRES 17 B 213 ILE THR VAL LYS ASP HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET EDO A 901 4 HET EDO A 902 4 HET PGE A1002 10 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HET EDO B 903 4 HET EDO B 904 4 HET PGE B1001 10 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 6(CA 2+) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 8 PGE 2(C6 H14 O4) FORMUL 15 HOH *903(H2 O) HELIX 1 1 SER A 26 GLU A 31 5 6 HELIX 2 2 LEU A 196 GLU A 199 5 4 HELIX 3 3 SER B 26 GLU B 31 5 6 HELIX 4 4 LEU B 196 GLU B 199 5 4 SHEET 1 A 4 ILE A 4 PRO A 10 0 SHEET 2 A 4 MET A 92 THR A 99 1 O VAL A 95 N ILE A 4 SHEET 3 A 4 LYS A 73 SER A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 A 4 VAL A 34 THR A 39 -1 N PHE A 35 O VAL A 81 SHEET 1 B 3 LYS A 19 GLN A 23 0 SHEET 2 B 3 TRP A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 B 3 PHE A 51 ILE A 53 -1 N ILE A 52 O LYS A 61 SHEET 1 C 2 GLU A 107 PHE A 108 0 SHEET 2 C 2 ALA A 132 THR A 133 -1 O THR A 133 N GLU A 107 SHEET 1 D 4 VAL A 112 ALA A 118 0 SHEET 2 D 4 SER A 202 LYS A 212 1 O VAL A 208 N PHE A 113 SHEET 3 D 4 THR A 186 ALA A 194 -1 N LEU A 189 O ALA A 207 SHEET 4 D 4 ALA A 147 ASP A 154 -1 N ASP A 154 O THR A 188 SHEET 1 E 3 SER A 126 LYS A 129 0 SHEET 2 E 3 VAL A 171 VAL A 174 -1 O ILE A 172 N VAL A 127 SHEET 3 E 3 PHE A 163 VAL A 165 -1 N THR A 164 O SER A 173 SHEET 1 F 4 ILE B 7 PRO B 10 0 SHEET 2 F 4 MET B 92 THR B 99 1 O THR B 97 N ILE B 7 SHEET 3 F 4 LYS B 73 SER B 82 -1 N LEU B 76 O ILE B 94 SHEET 4 F 4 VAL B 34 THR B 39 -1 N PHE B 35 O VAL B 81 SHEET 1 G 3 LYS B 19 GLN B 23 0 SHEET 2 G 3 TRP B 59 VAL B 62 -1 O LEU B 60 N VAL B 22 SHEET 3 G 3 PHE B 51 ILE B 53 -1 N ILE B 52 O LYS B 61 SHEET 1 H 2 GLU B 107 PHE B 108 0 SHEET 2 H 2 ALA B 132 THR B 133 -1 O THR B 133 N GLU B 107 SHEET 1 I 4 VAL B 112 ALA B 118 0 SHEET 2 I 4 SER B 202 LYS B 212 1 O LYS B 212 N VAL B 117 SHEET 3 I 4 THR B 186 ALA B 194 -1 N LEU B 189 O ALA B 207 SHEET 4 I 4 ALA B 147 ASP B 154 -1 N THR B 149 O GLN B 192 SHEET 1 J 3 SER B 126 LYS B 129 0 SHEET 2 J 3 VAL B 171 VAL B 174 -1 O ILE B 172 N VAL B 127 SHEET 3 J 3 PHE B 163 VAL B 165 -1 N THR B 164 O SER B 173 LINK OE1 GLU A 11 CA CA A 301 1555 1555 2.36 LINK OE2 GLU A 11 CA CA A 302 1555 1555 2.28 LINK OD1 ASP A 67 CA CA A 301 1555 1555 2.26 LINK OE1 GLU A 69 CA CA A 301 1555 1555 2.25 LINK OE2 GLU A 69 CA CA A 302 1555 1555 2.42 LINK OE1 GLU A 69 CA CA A 302 1555 1555 2.74 LINK OD1 ASP A 100 CA CA A 302 1555 1555 2.23 LINK O GLN A 101 CA CA A 302 1555 1555 2.45 LINK OD1 ASN A 102 CA CA A 303 1555 1555 2.34 LINK OD2 ASP A 103 CA CA A 301 1555 1555 2.31 LINK OD1 ASP A 103 CA CA A 302 1555 1555 2.35 LINK O ASN A 104 CA CA A 303 1555 1555 2.29 LINK OD2 ASP A 134 CA CA A 303 1555 1555 2.42 LINK OD1 ASP A 134 CA CA A 303 1555 1555 2.57 LINK OD1 ASP A 136 CA CA A 302 1555 1555 2.30 LINK OD2 ASP A 136 CA CA A 303 1555 1555 2.33 LINK O ASN A 143 CA CA A 303 1555 1555 2.33 LINK OD2 ASP A 195 CA CA A 303 1555 1555 2.35 LINK O HOH A 287 CA CA A 301 1555 1555 2.40 LINK O HOH A 288 CA CA A 301 1555 1555 2.44 LINK OE1 GLU B 11 CA CA B 301 1555 1555 2.33 LINK OE2 GLU B 11 CA CA B 302 1555 1555 2.29 LINK OD1 ASP B 67 CA CA B 301 1555 1555 2.29 LINK OE1 GLU B 69 CA CA B 301 1555 1555 2.23 LINK OE2 GLU B 69 CA CA B 302 1555 1555 2.42 LINK OE1 GLU B 69 CA CA B 302 1555 1555 2.74 LINK OD1 ASP B 100 CA CA B 302 1555 1555 2.24 LINK O GLN B 101 CA CA B 302 1555 1555 2.45 LINK OD1 ASN B 102 CA CA B 303 1555 1555 2.35 LINK OD2 ASP B 103 CA CA B 301 1555 1555 2.33 LINK OD1 ASP B 103 CA CA B 301 1555 1555 3.19 LINK OD1 ASP B 103 CA CA B 302 1555 1555 2.34 LINK O ASN B 104 CA CA B 303 1555 1555 2.28 LINK OD2 ASP B 134 CA CA B 303 1555 1555 2.38 LINK OD1 ASP B 134 CA CA B 303 1555 1555 2.59 LINK OD1 ASP B 136 CA CA B 302 1555 1555 2.28 LINK OD2 ASP B 136 CA CA B 303 1555 1555 2.37 LINK O ASN B 143 CA CA B 303 1555 1555 2.29 LINK OD2 ASP B 195 CA CA B 303 1555 1555 2.30 LINK CA CA B 301 O HOH B 533 1555 1555 2.35 LINK CA CA B 301 O HOH B 537 1555 1555 2.35 CISPEP 1 PHE A 17 PRO A 18 0 0.04 CISPEP 2 PRO A 46 PRO A 47 0 0.90 CISPEP 3 ASP A 154 PRO A 155 0 -1.92 CISPEP 4 LEU A 157 PRO A 158 0 3.16 CISPEP 5 PHE B 17 PRO B 18 0 1.09 CISPEP 6 PRO B 46 PRO B 47 0 -1.85 CISPEP 7 ASP B 154 PRO B 155 0 -1.66 CISPEP 8 LEU B 157 PRO B 158 0 -0.95 SITE 1 AC1 6 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC1 6 HOH A 287 HOH A 288 SITE 1 AC2 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC2 6 ASP A 103 ASP A 136 SITE 1 AC3 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC3 6 ASN A 143 ASP A 195 SITE 1 AC4 4 ASP A 1 TRP A 2 HOH A 363 HOH A 641 SITE 1 AC5 7 TYR A 77 HIS A 79 VAL A 122 HOH A 243 SITE 2 AC5 7 HOH A 818 HOH A 821 HOH A 858 SITE 1 AC6 3 ASP A 138 ASN A 140 TYR A 142 SITE 1 AC7 6 GLU B 11 ASP B 67 GLU B 69 ASP B 103 SITE 2 AC7 6 HOH B 533 HOH B 537 SITE 1 AC8 6 GLU B 11 GLU B 69 ASP B 100 GLN B 101 SITE 2 AC8 6 ASP B 103 ASP B 136 SITE 1 AC9 6 ASN B 102 ASN B 104 ASP B 134 ASP B 136 SITE 2 AC9 6 ASN B 143 ASP B 195 SITE 1 BC1 5 TYR B 77 HIS B 79 HOH B 267 HOH B 406 SITE 2 BC1 5 HOH B 414 SITE 1 BC2 3 TRP B 2 HOH B 489 HOH B 562 SITE 1 BC3 5 ASP B 138 VAL B 139 ASN B 140 THR B 141 SITE 2 BC3 5 TYR B 142 CRYST1 111.185 92.583 79.465 90.00 92.26 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008994 0.000000 0.000355 0.00000 SCALE2 0.000000 0.010801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012594 0.00000