HEADER RNA BINDING PROTEIN/RNA 18-FEB-11 3QRP TITLE STRUCTURE OF THERMUS THERMOPHILUS CSE3 BOUND TO AN RNA REPRESENTING A TITLE 2 PRODUCT MIMIC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN TTHB192; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(*GP*UP*CP*CP*CP*CP*AP*CP*(PGP))-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: CRISPR RNA; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: RNA (5'-R(P*(U5P)P*GP*UP*GP*GP*GP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: CRISPR RNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHB1192, TTHB192; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED RNA; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: CHEMICALLY SYNTHESIZED RNA KEYWDS RAMP DOMAIN, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.SCHELLENBERG,E.M.GESNER,E.L.GARSIDE,A.M.MACMILLAN REVDAT 3 21-FEB-24 3QRP 1 REMARK SEQADV LINK REVDAT 2 22-JUN-11 3QRP 1 JRNL REVDAT 1 25-MAY-11 3QRP 0 JRNL AUTH E.M.GESNER,M.J.SCHELLENBERG,E.L.GARSIDE,M.M.GEORGE, JRNL AUTH 2 A.M.MACMILLAN JRNL TITL RECOGNITION AND MATURATION OF EFFECTOR RNAS IN A CRISPR JRNL TITL 2 INTERFERENCE PATHWAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 688 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21572444 JRNL DOI 10.1038/NSMB.2042 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 11249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1709 REMARK 3 NUCLEIC ACID ATOMS : 345 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.463 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2133 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2963 ; 1.518 ; 2.200 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 8.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;31.440 ;21.519 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 311 ;17.635 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1498 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 842 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1365 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.207 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1104 ; 1.681 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1715 ; 2.228 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1282 ; 3.744 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1248 ; 4.593 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4810 -15.5740 14.3620 REMARK 3 T TENSOR REMARK 3 T11: -0.0288 T22: -0.0263 REMARK 3 T33: -0.0172 T12: -0.0062 REMARK 3 T13: 0.0065 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.2797 L22: 0.3220 REMARK 3 L33: 0.4084 L12: 0.0215 REMARK 3 L13: -0.0625 L23: 0.0898 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0078 S13: -0.0172 REMARK 3 S21: 0.0180 S22: -0.0137 S23: 0.0268 REMARK 3 S31: -0.0126 S32: 0.0029 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9300 -16.3000 32.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: -0.0398 REMARK 3 T33: -0.0381 T12: -0.0142 REMARK 3 T13: 0.0089 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9221 L22: 0.6842 REMARK 3 L33: 0.8772 L12: -0.0211 REMARK 3 L13: -0.4513 L23: 0.4043 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.0241 S13: -0.0005 REMARK 3 S21: 0.1666 S22: -0.0382 S23: 0.0881 REMARK 3 S31: 0.0515 S32: -0.0310 S33: 0.0211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.352 REMARK 200 RESOLUTION RANGE LOW (A) : 34.752 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 100MM KCL, 5MM MGSO4, REMARK 280 1MM SPERMIDINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K, REMARK 280 PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.52850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.11250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.20250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.11250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.52850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.20250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -55 REMARK 465 HIS A -54 REMARK 465 HIS A -53 REMARK 465 HIS A -52 REMARK 465 HIS A -51 REMARK 465 HIS A -50 REMARK 465 HIS A -49 REMARK 465 SER A -48 REMARK 465 SER A -47 REMARK 465 GLY A -46 REMARK 465 LEU A -45 REMARK 465 VAL A -44 REMARK 465 PRO A -43 REMARK 465 ARG A -42 REMARK 465 GLY A -41 REMARK 465 SER A -40 REMARK 465 GLY A -39 REMARK 465 MET A -38 REMARK 465 LYS A -37 REMARK 465 GLU A -36 REMARK 465 THR A -35 REMARK 465 ALA A -34 REMARK 465 ALA A -33 REMARK 465 ALA A -32 REMARK 465 LYS A -31 REMARK 465 PHE A -30 REMARK 465 GLU A -29 REMARK 465 ARG A -28 REMARK 465 GLN A -27 REMARK 465 HIS A -26 REMARK 465 MET A -25 REMARK 465 ASP A -24 REMARK 465 SER A -23 REMARK 465 PRO A -22 REMARK 465 ASP A -21 REMARK 465 LEU A -20 REMARK 465 GLY A -19 REMARK 465 THR A -18 REMARK 465 ASP A -17 REMARK 465 ASP A -16 REMARK 465 ASP A -15 REMARK 465 ASP A -14 REMARK 465 LYS A -13 REMARK 465 ALA A -12 REMARK 465 MET A -11 REMARK 465 ALA A -10 REMARK 465 ASP A -9 REMARK 465 ILE A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C B 7 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 C B 11 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 U5P C 15 C3' - O3' - P ANGL. DEV. = 12.9 DEGREES REMARK 500 G C 16 O3' - P - OP1 ANGL. DEV. = 11.8 DEGREES REMARK 500 G C 16 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 G C 18 C3' - C2' - C1' ANGL. DEV. = -4.2 DEGREES REMARK 500 G C 18 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 74 GLY A 75 -146.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QRQ RELATED DB: PDB REMARK 900 RELATED ID: 3QRR RELATED DB: PDB DBREF 3QRP A 1 211 UNP Q53WG9 Q53WG9_THET8 1 211 DBREF 3QRP B 4 12 PDB 3QRP 3QRP 4 12 DBREF 3QRP C 15 21 PDB 3QRP 3QRP 15 21 SEQADV 3QRP MET A -55 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP HIS A -54 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP HIS A -53 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP HIS A -52 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP HIS A -51 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP HIS A -50 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP HIS A -49 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP SER A -48 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP SER A -47 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLY A -46 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP LEU A -45 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP VAL A -44 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP PRO A -43 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ARG A -42 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLY A -41 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP SER A -40 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLY A -39 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP MET A -38 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP LYS A -37 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLU A -36 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP THR A -35 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ALA A -34 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ALA A -33 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ALA A -32 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP LYS A -31 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP PHE A -30 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLU A -29 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ARG A -28 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLN A -27 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP HIS A -26 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP MET A -25 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASP A -24 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP SER A -23 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP PRO A -22 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASP A -21 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP LEU A -20 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLY A -19 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP THR A -18 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASP A -17 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASP A -16 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASP A -15 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASP A -14 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP LYS A -13 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ALA A -12 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP MET A -11 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ALA A -10 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASP A -9 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ILE A -8 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLY A -7 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP SER A -6 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLU A -5 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP ASN A -4 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP LEU A -3 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP TYR A -2 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP PHE A -1 UNP Q53WG9 EXPRESSION TAG SEQADV 3QRP GLN A 0 UNP Q53WG9 EXPRESSION TAG SEQRES 1 A 267 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 267 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 267 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP SEQRES 4 A 267 ASP ASP ASP LYS ALA MET ALA ASP ILE GLY SER GLU ASN SEQRES 5 A 267 LEU TYR PHE GLN MET TRP LEU THR LYS LEU VAL LEU ASN SEQRES 6 A 267 PRO ALA SER ARG ALA ALA ARG ARG ASP LEU ALA ASN PRO SEQRES 7 A 267 TYR GLU MET HIS ARG THR LEU SER LYS ALA VAL SER ARG SEQRES 8 A 267 ALA LEU GLU GLU GLY ARG GLU ARG LEU LEU TRP ARG LEU SEQRES 9 A 267 GLU PRO ALA ARG GLY LEU GLU PRO PRO VAL VAL LEU VAL SEQRES 10 A 267 GLN THR LEU THR GLU PRO ASP TRP SER VAL LEU ASP GLU SEQRES 11 A 267 GLY TYR ALA GLN VAL PHE PRO PRO LYS PRO PHE HIS PRO SEQRES 12 A 267 ALA LEU LYS PRO GLY GLN ARG LEU ARG PHE ARG LEU ARG SEQRES 13 A 267 ALA ASN PRO ALA LYS ARG LEU ALA ALA THR GLY LYS ARG SEQRES 14 A 267 VAL ALA LEU LYS THR PRO ALA GLU LYS VAL ALA TRP LEU SEQRES 15 A 267 GLU ARG ARG LEU GLU GLU GLY GLY PHE ARG LEU LEU GLU SEQRES 16 A 267 GLY GLU ARG GLY PRO TRP VAL GLN ILE LEU GLN ASP THR SEQRES 17 A 267 PHE LEU GLU VAL ARG ARG LYS LYS ASP GLY GLU GLU ALA SEQRES 18 A 267 GLY LYS LEU LEU GLN VAL GLN ALA VAL LEU PHE GLU GLY SEQRES 19 A 267 ARG LEU GLU VAL VAL ASP PRO GLU ARG ALA LEU ALA THR SEQRES 20 A 267 LEU ARG ARG GLY VAL GLY PRO GLY LYS ALA LEU GLY LEU SEQRES 21 A 267 GLY LEU LEU SER VAL ALA PRO SEQRES 1 B 9 G U C C C C A C PGP SEQRES 1 C 7 U5P G U G G G G MODRES 3QRP PGP B 12 G GUANOSINE-3',5'-DIPHOSPHATE HET PGP B 12 27 HET U5P C 15 21 HET SO4 A 212 5 HETNAM PGP GUANOSINE-3',5'-DIPHOSPHATE HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 PGP C10 H15 N5 O11 P2 FORMUL 3 U5P C9 H13 N2 O9 P FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *152(H2 O) HELIX 1 1 SER A 12 ASN A 21 1 10 HELIX 2 2 ASN A 21 LYS A 31 1 11 HELIX 3 3 VAL A 33 GLY A 40 1 8 HELIX 4 4 ASP A 68 LEU A 72 5 5 HELIX 5 5 THR A 118 GLY A 133 1 16 HELIX 6 6 ASP A 184 GLY A 195 1 12 HELIX 7 7 GLY A 199 GLY A 203 5 5 SHEET 1 A 4 LEU A 45 GLU A 49 0 SHEET 2 A 4 VAL A 58 THR A 63 -1 O VAL A 58 N GLU A 49 SHEET 3 A 4 MET A 1 LEU A 8 -1 N TRP A 2 O THR A 63 SHEET 4 A 4 ALA A 77 VAL A 79 -1 O GLN A 78 N VAL A 7 SHEET 1 B 4 LEU A 45 GLU A 49 0 SHEET 2 B 4 VAL A 58 THR A 63 -1 O VAL A 58 N GLU A 49 SHEET 3 B 4 MET A 1 LEU A 8 -1 N TRP A 2 O THR A 63 SHEET 4 B 4 LYS A 83 PHE A 85 -1 O LYS A 83 N LEU A 3 SHEET 1 C 3 PHE A 135 LEU A 137 0 SHEET 2 C 3 GLU A 164 VAL A 182 -1 O GLU A 181 N ARG A 136 SHEET 3 C 3 VAL A 146 LYS A 160 -1 N THR A 152 O ALA A 173 SHEET 1 D 4 PHE A 135 LEU A 137 0 SHEET 2 D 4 GLU A 164 VAL A 182 -1 O GLU A 181 N ARG A 136 SHEET 3 D 4 ARG A 94 ALA A 101 -1 N LEU A 99 O PHE A 176 SHEET 4 D 4 SER A 208 ALA A 210 -1 O ALA A 210 N ARG A 96 SHEET 1 E 2 ALA A 104 ARG A 106 0 SHEET 2 E 2 ARG A 113 ALA A 115 -1 O VAL A 114 N LYS A 105 SHEET 1 F 2 GLU A 139 GLY A 140 0 SHEET 2 F 2 GLY A 143 PRO A 144 -1 O GLY A 143 N GLY A 140 LINK O3' C B 11 P PGP B 12 1555 1555 1.60 SITE 1 AC1 7 PHE A -1 ARG A 41 ARG A 193 ARG A 194 SITE 2 AC1 7 HOH A 271 HOH A 296 HOH A 303 CRYST1 37.057 72.405 100.225 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009978 0.00000