HEADER HYDROLASE 18-FEB-11 3QRY
TITLE ANALYSIS OF A NEW FAMILY OF WIDELY DISTRIBUTED METAL-INDEPENDENT ALPHA
TITLE 2 MANNOSIDASES PROVIDES UNIQUE INSIGHT INTO THE PROCESSING OF N-LINKED
TITLE 3 GLYCANS, STREPTOCOCCUS PNEUMONIAE SP_2144 1-DEOXYMANNOJIRIMYCIN
TITLE 4 COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN;
COMPND 3 CHAIN: B, A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 1313;
SOURCE 4 GENE: SP_2144;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 STAR
KEYWDS ALPHA-ALPHA SIX FOLD, GLYCOSIDE HYDROLASE, MANNOSIDASE, 1-
KEYWDS 2 DEOXYMANNOJIRIMYCIN, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.J.GREGG,W.F.ZANDBERG,J.-H.HEHEMANN,G.E.WHITWORTH,L.E.DENG,
AUTHOR 2 D.J.VOCADLO,A.B.BORASTON
REVDAT 4 21-FEB-24 3QRY 1 REMARK
REVDAT 3 11-MAY-11 3QRY 1 JRNL
REVDAT 2 23-MAR-11 3QRY 1 JRNL
REVDAT 1 09-MAR-11 3QRY 0
JRNL AUTH K.J.GREGG,W.F.ZANDBERG,J.H.HEHEMANN,G.E.WHITWORTH,L.DENG,
JRNL AUTH 2 D.J.VOCADLO,A.B.BORASTON
JRNL TITL ANALYSIS OF A NEW FAMILY OF WIDELY DISTRIBUTED
JRNL TITL 2 METAL-INDEPENDENT {ALPHA}-MANNOSIDASES PROVIDES UNIQUE
JRNL TITL 3 INSIGHT INTO THE PROCESSING OF N-LINKED GLYCANS.
JRNL REF J.BIOL.CHEM. V. 286 15586 2011
JRNL REFN ISSN 0021-9258
JRNL PMID 21388958
JRNL DOI 10.1074/JBC.M111.223172
REMARK 2
REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0072
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4
REMARK 3 NUMBER OF REFLECTIONS : 88818
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.172
REMARK 3 R VALUE (WORKING SET) : 0.170
REMARK 3 FREE R VALUE : 0.218
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 4679
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80
REMARK 3 REFLECTION IN BIN (WORKING SET) : 5261
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.52
REMARK 3 BIN R VALUE (WORKING SET) : 0.2160
REMARK 3 BIN FREE R VALUE SET COUNT : 303
REMARK 3 BIN FREE R VALUE : 0.2660
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6922
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 46
REMARK 3 SOLVENT ATOMS : 1388
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.15
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.74000
REMARK 3 B22 (A**2) : -0.99000
REMARK 3 B33 (A**2) : -0.38000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.63000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.226
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7164 ; 0.015 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9746 ; 1.401 ; 1.945
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 860 ; 5.868 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 365 ;36.382 ;24.301
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1161 ;12.927 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.816 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1055 ; 0.099 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5528 ; 0.007 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4259 ; 0.748 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6890 ; 1.280 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2905 ; 2.232 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2851 ; 3.571 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3QRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11.
REMARK 100 THE DEPOSITION ID IS D_1000064027.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10
REMARK 200 TEMPERATURE (KELVIN) : 117
REMARK 200 PH : 8.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL9-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88818
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750
REMARK 200 RESOLUTION RANGE LOW (A) : 158.800
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84
REMARK 200 COMPLETENESS FOR SHELL (%) : 2.0
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.38
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.2 M LISO4, PH 8.0,
REMARK 280 VAPOR DIFFUSION, HANGING DROP
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 79.40000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 1111 O HOH A 1362 1.82
REMARK 500 O HOH B 978 O HOH B 1074 1.93
REMARK 500 CZ3 TRP B 60 O HOH B 1322 1.95
REMARK 500 O HOH A 526 O HOH A 1199 1.95
REMARK 500 O HOH B 664 O HOH B 777 1.97
REMARK 500 NH1 ARG A 426 O HOH A 1214 2.01
REMARK 500 O HOH B 542 O HOH A 1309 2.02
REMARK 500 O HOH A 638 O HOH A 689 2.04
REMARK 500 O HOH B 1232 O HOH B 1249 2.07
REMARK 500 NH1 ARG B 18 O HOH B 809 2.08
REMARK 500 O HOH B 749 O HOH B 930 2.09
REMARK 500 O HOH B 443 O HOH B 1106 2.10
REMARK 500 O HOH B 465 O HOH B 1076 2.11
REMARK 500 O HOH A 436 O HOH A 1126 2.12
REMARK 500 OE2 GLU A 417 O HOH A 758 2.13
REMARK 500 CD GLU A 417 O HOH A 1209 2.14
REMARK 500 O HOH B 466 O HOH B 822 2.16
REMARK 500 O HOH A 478 O HOH A 1078 2.16
REMARK 500 O HOH A 488 O HOH A 1363 2.17
REMARK 500 OE1 GLU A 417 O HOH A 1209 2.17
REMARK 500 OD2 ASP A 251 O HOH A 1102 2.17
REMARK 500 OD2 ASP A 198 O HOH A 1040 2.18
REMARK 500 CG2 THR A 49 O HOH A 814 2.18
REMARK 500 O HOH B 572 O HOH B 1263 2.19
REMARK 500 O HOH B 1130 O HOH B 1153 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP B 99 105.55 -170.19
REMARK 500 MET B 298 -179.33 -174.34
REMARK 500 LEU B 330 50.68 -96.07
REMARK 500 ASP B 399 89.26 -169.52
REMARK 500 ARG B 405 93.77 65.91
REMARK 500 ASP A 99 105.42 -168.38
REMARK 500 ARG A 129 50.50 -112.00
REMARK 500 ASP A 157 -169.52 -101.57
REMARK 500 LEU A 330 50.87 -95.33
REMARK 500 ARG A 354 -8.33 79.92
REMARK 500 ASP A 399 93.07 -170.05
REMARK 500 ARG A 405 99.44 64.23
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMJ B 427
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 428
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 429
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 430
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 427
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 428
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 429
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMJ A 430
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3QPF RELATED DB: PDB
REMARK 900 THE SAME PROTEIN COMPLEXED WITH 1-DEOXYMANNOJIRIMYCIN
REMARK 900 RELATED ID: 3QSP RELATED DB: PDB
DBREF 3QRY B 1 426 UNP Q97NA8 Q97NA8_STRPN 1 426
DBREF 3QRY A 1 426 UNP Q97NA8 Q97NA8_STRPN 1 426
SEQRES 1 B 426 MET VAL TYR SER LYS GLU ILE VAL ARG GLU TRP LEU ASP
SEQRES 2 B 426 GLU VAL ALA GLU ARG ALA LYS ASP TYR PRO GLU TRP VAL
SEQRES 3 B 426 ASP VAL PHE GLU ARG CYS TYR THR ASP THR LEU ASP ASN
SEQRES 4 B 426 THR VAL GLU ILE LEU GLU ASP GLY SER THR PHE VAL LEU
SEQRES 5 B 426 THR GLY ASP ILE PRO ALA MET TRP LEU ARG ASP SER THR
SEQRES 6 B 426 ALA GLN LEU ARG PRO TYR LEU HIS VAL ALA LYS ARG ASP
SEQRES 7 B 426 ALA LEU LEU ARG GLN THR ILE ALA GLY LEU VAL LYS ARG
SEQRES 8 B 426 GLN MET THR LEU VAL LEU LYS ASP PRO TYR ALA ASN SER
SEQRES 9 B 426 PHE ASN ILE GLU GLU ASN TRP LYS GLY HIS HIS GLU THR
SEQRES 10 B 426 ASP HIS THR ASP LEU ASN GLY TRP ILE TRP GLU ARG LYS
SEQRES 11 B 426 TYR GLU VAL ASP SER LEU CYS TYR PRO LEU GLN LEU ALA
SEQRES 12 B 426 TYR LEU LEU TRP LYS GLU THR GLY GLU THR SER GLN PHE
SEQRES 13 B 426 ASP GLU ILE PHE VAL ALA ALA THR LYS GLU ILE LEU HIS
SEQRES 14 B 426 LEU TRP THR VAL GLU GLN ASP HIS LYS ASN SER PRO TYR
SEQRES 15 B 426 ARG PHE VAL ARG ASP THR ASP ARG LYS GLU ASP THR LEU
SEQRES 16 B 426 VAL ASN ASP GLY PHE GLY PRO ASP PHE ALA VAL THR GLY
SEQRES 17 B 426 MET THR TRP SER ALA PHE ARG PRO SER ASP ASP CYS CYS
SEQRES 18 B 426 GLN TYR SER TYR LEU ILE PRO SER ASN MET PHE ALA VAL
SEQRES 19 B 426 VAL VAL LEU GLY TYR VAL GLN GLU ILE PHE ALA ALA LEU
SEQRES 20 B 426 ASN LEU ALA ASP SER GLN SER VAL ILE ALA ASP ALA LYS
SEQRES 21 B 426 ARG LEU GLN ASP GLU ILE GLN GLU GLY ILE LYS ASN TYR
SEQRES 22 B 426 ALA TYR THR THR ASN SER LYS GLY GLU LYS ILE TYR ALA
SEQRES 23 B 426 PHE GLU VAL ASP GLY LEU GLY ASN ALA SER ILE MET ASP
SEQRES 24 B 426 ASP PRO ASN VAL PRO SER LEU LEU ALA ALA PRO TYR LEU
SEQRES 25 B 426 GLY TYR CYS SER VAL ASP ASP GLU VAL TYR GLN ALA THR
SEQRES 26 B 426 ARG ARG THR ILE LEU SER SER GLU ASN PRO TYR PHE TYR
SEQRES 27 B 426 GLN GLY GLU TYR ALA SER GLY LEU GLY SER SER HIS THR
SEQRES 28 B 426 PHE TYR ARG TYR ILE TRP PRO ILE ALA LEU SER ILE GLN
SEQRES 29 B 426 GLY LEU THR THR ARG ASP LYS ALA GLU LYS LYS PHE LEU
SEQRES 30 B 426 LEU ASP GLN LEU VAL ALA CYS ASP GLY GLY THR GLY VAL
SEQRES 31 B 426 MET HIS GLU SER PHE HIS VAL ASP ASP PRO THR LEU TYR
SEQRES 32 B 426 SER ARG GLU TRP PHE SER TRP ALA ASN MET MET PHE CYS
SEQRES 33 B 426 GLU LEU VAL LEU ASP TYR LEU ASP ILE ARG
SEQRES 1 A 426 MET VAL TYR SER LYS GLU ILE VAL ARG GLU TRP LEU ASP
SEQRES 2 A 426 GLU VAL ALA GLU ARG ALA LYS ASP TYR PRO GLU TRP VAL
SEQRES 3 A 426 ASP VAL PHE GLU ARG CYS TYR THR ASP THR LEU ASP ASN
SEQRES 4 A 426 THR VAL GLU ILE LEU GLU ASP GLY SER THR PHE VAL LEU
SEQRES 5 A 426 THR GLY ASP ILE PRO ALA MET TRP LEU ARG ASP SER THR
SEQRES 6 A 426 ALA GLN LEU ARG PRO TYR LEU HIS VAL ALA LYS ARG ASP
SEQRES 7 A 426 ALA LEU LEU ARG GLN THR ILE ALA GLY LEU VAL LYS ARG
SEQRES 8 A 426 GLN MET THR LEU VAL LEU LYS ASP PRO TYR ALA ASN SER
SEQRES 9 A 426 PHE ASN ILE GLU GLU ASN TRP LYS GLY HIS HIS GLU THR
SEQRES 10 A 426 ASP HIS THR ASP LEU ASN GLY TRP ILE TRP GLU ARG LYS
SEQRES 11 A 426 TYR GLU VAL ASP SER LEU CYS TYR PRO LEU GLN LEU ALA
SEQRES 12 A 426 TYR LEU LEU TRP LYS GLU THR GLY GLU THR SER GLN PHE
SEQRES 13 A 426 ASP GLU ILE PHE VAL ALA ALA THR LYS GLU ILE LEU HIS
SEQRES 14 A 426 LEU TRP THR VAL GLU GLN ASP HIS LYS ASN SER PRO TYR
SEQRES 15 A 426 ARG PHE VAL ARG ASP THR ASP ARG LYS GLU ASP THR LEU
SEQRES 16 A 426 VAL ASN ASP GLY PHE GLY PRO ASP PHE ALA VAL THR GLY
SEQRES 17 A 426 MET THR TRP SER ALA PHE ARG PRO SER ASP ASP CYS CYS
SEQRES 18 A 426 GLN TYR SER TYR LEU ILE PRO SER ASN MET PHE ALA VAL
SEQRES 19 A 426 VAL VAL LEU GLY TYR VAL GLN GLU ILE PHE ALA ALA LEU
SEQRES 20 A 426 ASN LEU ALA ASP SER GLN SER VAL ILE ALA ASP ALA LYS
SEQRES 21 A 426 ARG LEU GLN ASP GLU ILE GLN GLU GLY ILE LYS ASN TYR
SEQRES 22 A 426 ALA TYR THR THR ASN SER LYS GLY GLU LYS ILE TYR ALA
SEQRES 23 A 426 PHE GLU VAL ASP GLY LEU GLY ASN ALA SER ILE MET ASP
SEQRES 24 A 426 ASP PRO ASN VAL PRO SER LEU LEU ALA ALA PRO TYR LEU
SEQRES 25 A 426 GLY TYR CYS SER VAL ASP ASP GLU VAL TYR GLN ALA THR
SEQRES 26 A 426 ARG ARG THR ILE LEU SER SER GLU ASN PRO TYR PHE TYR
SEQRES 27 A 426 GLN GLY GLU TYR ALA SER GLY LEU GLY SER SER HIS THR
SEQRES 28 A 426 PHE TYR ARG TYR ILE TRP PRO ILE ALA LEU SER ILE GLN
SEQRES 29 A 426 GLY LEU THR THR ARG ASP LYS ALA GLU LYS LYS PHE LEU
SEQRES 30 A 426 LEU ASP GLN LEU VAL ALA CYS ASP GLY GLY THR GLY VAL
SEQRES 31 A 426 MET HIS GLU SER PHE HIS VAL ASP ASP PRO THR LEU TYR
SEQRES 32 A 426 SER ARG GLU TRP PHE SER TRP ALA ASN MET MET PHE CYS
SEQRES 33 A 426 GLU LEU VAL LEU ASP TYR LEU ASP ILE ARG
HET DMJ B 427 11
HET EDO B 428 4
HET EDO B 429 4
HET EDO B 430 4
HET EDO A 427 4
HET EDO A 428 4
HET EDO A 429 4
HET DMJ A 430 11
HETNAM DMJ 1-DEOXYMANNOJIRIMYCIN
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 DMJ 2(C6 H13 N O4)
FORMUL 4 EDO 6(C2 H6 O2)
FORMUL 11 HOH *1388(H2 O)
HELIX 1 1 SER B 4 ALA B 19 1 16
HELIX 2 2 TYR B 22 THR B 40 1 19
HELIX 3 3 LEU B 61 ARG B 69 1 9
HELIX 4 4 TYR B 71 LYS B 76 1 6
HELIX 5 5 ASP B 78 ASP B 99 1 22
HELIX 6 6 GLU B 132 GLY B 151 1 20
HELIX 7 7 ASP B 157 GLU B 174 1 18
HELIX 8 8 GLN B 175 SER B 180 5 6
HELIX 9 9 ARG B 190 THR B 194 5 5
HELIX 10 10 LEU B 195 PHE B 200 1 6
HELIX 11 11 ILE B 227 ASN B 248 1 22
HELIX 12 12 ASP B 251 ALA B 274 1 24
HELIX 13 13 ASP B 319 LEU B 330 1 12
HELIX 14 14 TRP B 357 THR B 367 1 11
HELIX 15 15 ASP B 370 CYS B 384 1 15
HELIX 16 16 PHE B 408 LEU B 423 1 16
HELIX 17 17 SER A 4 ALA A 19 1 16
HELIX 18 18 TYR A 22 THR A 40 1 19
HELIX 19 19 LEU A 61 ARG A 69 1 9
HELIX 20 20 PRO A 70 ARG A 77 5 8
HELIX 21 21 ASP A 78 ASP A 99 1 22
HELIX 22 22 GLU A 132 GLY A 151 1 20
HELIX 23 23 ASP A 157 GLU A 174 1 18
HELIX 24 24 GLN A 175 SER A 180 5 6
HELIX 25 25 ARG A 190 THR A 194 5 5
HELIX 26 26 LEU A 195 PHE A 200 1 6
HELIX 27 27 ILE A 227 ASN A 248 1 22
HELIX 28 28 ASP A 251 ALA A 274 1 24
HELIX 29 29 ASP A 319 LEU A 330 1 12
HELIX 30 30 TRP A 357 THR A 367 1 11
HELIX 31 31 ASP A 370 CYS A 384 1 15
HELIX 32 32 PHE A 408 LEU A 423 1 16
SHEET 1 A 2 VAL B 41 ILE B 43 0
SHEET 2 A 2 THR B 49 VAL B 51 -1 O PHE B 50 N GLU B 42
SHEET 1 B 3 ALA B 58 TRP B 60 0
SHEET 2 B 3 SER B 104 ASN B 106 -1 O PHE B 105 N MET B 59
SHEET 3 B 3 ILE B 126 GLU B 128 -1 O TRP B 127 N SER B 104
SHEET 1 C 2 ASP B 118 HIS B 119 0
SHEET 2 C 2 VAL B 185 ARG B 186 -1 O VAL B 185 N HIS B 119
SHEET 1 D 2 TYR B 225 LEU B 226 0
SHEET 2 D 2 GLU B 288 VAL B 289 -1 O VAL B 289 N TYR B 225
SHEET 1 E 2 TYR B 275 THR B 277 0
SHEET 2 E 2 LYS B 283 TYR B 285 -1 O ILE B 284 N THR B 276
SHEET 1 F 2 PHE B 337 GLN B 339 0
SHEET 2 F 2 SER B 344 LEU B 346 -1 O GLY B 345 N TYR B 338
SHEET 1 G 3 TYR B 355 ILE B 356 0
SHEET 2 G 3 SER B 394 HIS B 396 -1 O PHE B 395 N ILE B 356
SHEET 3 G 3 ASP B 399 SER B 404 -1 O LEU B 402 N HIS B 396
SHEET 1 H 2 VAL A 41 ILE A 43 0
SHEET 2 H 2 THR A 49 VAL A 51 -1 O PHE A 50 N GLU A 42
SHEET 1 I 3 MET A 59 TRP A 60 0
SHEET 2 I 3 SER A 104 PHE A 105 -1 O PHE A 105 N MET A 59
SHEET 3 I 3 ILE A 126 GLU A 128 -1 O TRP A 127 N SER A 104
SHEET 1 J 2 ASP A 118 HIS A 119 0
SHEET 2 J 2 VAL A 185 ARG A 186 -1 O VAL A 185 N HIS A 119
SHEET 1 K 2 TYR A 225 LEU A 226 0
SHEET 2 K 2 GLU A 288 VAL A 289 -1 O VAL A 289 N TYR A 225
SHEET 1 L 2 TYR A 275 THR A 277 0
SHEET 2 L 2 LYS A 283 TYR A 285 -1 O ILE A 284 N THR A 276
SHEET 1 M 2 PHE A 337 GLN A 339 0
SHEET 2 M 2 SER A 344 LEU A 346 -1 O GLY A 345 N TYR A 338
SHEET 1 N 3 TYR A 355 ILE A 356 0
SHEET 2 N 3 SER A 394 HIS A 396 -1 O PHE A 395 N ILE A 356
SHEET 3 N 3 ASP A 399 SER A 404 -1 O LEU A 402 N HIS A 396
CISPEP 1 VAL B 303 PRO B 304 0 2.80
CISPEP 2 VAL A 303 PRO A 304 0 9.76
SITE 1 AC1 14 THR B 53 TRP B 60 ARG B 62 ASP B 63
SITE 2 AC1 14 PRO B 216 SER B 217 ASP B 218 ASN B 302
SITE 3 AC1 14 HIS B 350 TRP B 357 ARG B 405 TRP B 410
SITE 4 AC1 14 HOH B 629 HOH B 780
SITE 1 AC2 4 ASP B 251 SER B 252 GLN B 253 HOH B 968
SITE 1 AC3 6 ARG B 69 GLU B 149 GLU B 417 HOH B 599
SITE 2 AC3 6 HOH B 932 HOH B1100
SITE 1 AC4 5 GLU B 14 ILE B 425 HOH B 970 HOH B1027
SITE 2 AC4 5 HOH B1049
SITE 1 AC5 3 ASN A 197 ASP A 198 HOH A 438
SITE 1 AC6 2 SER A 316 ARG A 369
SITE 1 AC7 2 GLU A 14 HOH A1227
SITE 1 AC8 14 TRP A 60 ARG A 62 ASP A 63 PRO A 216
SITE 2 AC8 14 ASP A 218 ASN A 302 HIS A 350 TRP A 357
SITE 3 AC8 14 ARG A 405 PHE A 408 TRP A 410 HOH A 478
SITE 4 AC8 14 HOH A 533 HOH A1078
CRYST1 53.460 158.800 60.040 90.00 107.19 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018706 0.000000 0.005787 0.00000
SCALE2 0.000000 0.006297 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017434 0.00000