HEADER HEME-BINDING PROTEIN 24-FEB-11 3QUH TITLE STRUCTURE OF HEME TRANSPORT PROTEIN ISDH-NEAT3 FROM S. AUREUS IN TITLE 2 COMPLEX WITH MANGANESE(III)-PORPHYRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-REGULATED SURFACE DETERMINANT PROTEIN H; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NEAT DOMAIN (UNP REIDUES 539-664); COMPND 5 SYNONYM: HAPTOGLOBIN RECEPTOR A, STAPHYLOCOCCUS AUREUS SURFACE COMPND 6 PROTEIN I; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50 / ATCC 700699; SOURCE 5 GENE: HARA, ISDH, ISDH-NEAT3, SASI, SAV1731; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS MANGANESE (III), METALLOPORPHYRIN, METAL SELECTIVITY, NEAT DOMAIN, KEYWDS 2 HEME BINDING, HEME TRANSPORT, HEME, HEMIN, PPIX, PROTOPORPHYRIN IX, KEYWDS 3 CELL WALL, HEME-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.MORIWAKI,J.M.M.CAAVEIRO,K.TSUMOTO REVDAT 3 01-NOV-23 3QUH 1 REMARK REVDAT 2 15-FEB-12 3QUH 1 JRNL VERSN REVDAT 1 30-MAR-11 3QUH 0 JRNL AUTH Y.MORIWAKI,J.M.M.CAAVEIRO,Y.TANAKA,H.TSUTSUMI,I.HAMACHI, JRNL AUTH 2 K.TSUMOTO JRNL TITL MOLECULAR BASIS OF RECOGNITION OF ANTIBACTERIAL PORPHYRINS JRNL TITL 2 BY HEME-TRANSPORTER ISDH-NEAT3 OF STAPHYLOCOCCUS AUREUS. JRNL REF BIOCHEMISTRY V. 50 7311 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21797259 JRNL DOI 10.1021/BI200493H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.WATANABE,Y.TANAKA,A.SUENAGA,M.KURODA,M.YAO,N.WATANABE, REMARK 1 AUTH 2 F.ARISAKA,T.OHTA,I.TANAKA,K.TSUMOTO REMARK 1 TITL STRUCTURAL BASIS FOR MULTIMERIC HEME COMPLEXATION THROUGH A REMARK 1 TITL 2 SPECIFIC PROTEIN-HEME INTERACTION: THE CASE OF THE THIRD REMARK 1 TITL 3 NEAT DOMAIN OF ISDH FROM STAPHYLOCOCCUS AUREUS. REMARK 1 REF J.BIOL.CHEM. V. 283 28649 2008 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 18667422 REMARK 1 DOI 10.1074/JBC.M803383200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 7754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.85000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.398 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.351 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.824 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1966 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2694 ; 1.230 ; 2.081 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 6.702 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;38.964 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;17.382 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;25.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1492 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1116 ; 0.287 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 0.545 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 850 ; 0.842 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 864 ; 1.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 544 A 655 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2392 -53.8891 44.2627 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.1285 REMARK 3 T33: 0.1166 T12: -0.0107 REMARK 3 T13: 0.0148 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.6537 L22: 4.8011 REMARK 3 L33: 3.0469 L12: 0.4765 REMARK 3 L13: -0.6618 L23: -0.8630 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: -0.0180 S13: -0.2296 REMARK 3 S21: 0.0219 S22: -0.0621 S23: -0.2924 REMARK 3 S31: -0.0189 S32: 0.0048 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 544 B 655 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5866 -23.7817 29.8303 REMARK 3 T TENSOR REMARK 3 T11: 0.3002 T22: 0.1105 REMARK 3 T33: 0.0192 T12: 0.0185 REMARK 3 T13: -0.0093 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.1043 L22: 6.4461 REMARK 3 L33: 2.0381 L12: -0.4619 REMARK 3 L13: -0.1489 L23: -0.6270 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: 0.1187 S13: 0.1224 REMARK 3 S21: 0.0356 S22: 0.0269 S23: -0.1898 REMARK 3 S31: -0.0235 S32: 0.0470 S33: 0.0337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 LIQUID NITROGEN COOLING REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14200 REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : 0.40400 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2Z6F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-MME 500 30%, BICINE 0.1M, SODIUM REMARK 280 CHLORIDE 0.1M, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.96500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 539 REMARK 465 THR A 540 REMARK 465 ASN A 541 REMARK 465 ASP A 542 REMARK 465 GLN A 543 REMARK 465 ASN A 656 REMARK 465 THR A 657 REMARK 465 LYS A 658 REMARK 465 ASP A 659 REMARK 465 ASP A 660 REMARK 465 ASP A 661 REMARK 465 THR A 662 REMARK 465 SER A 663 REMARK 465 GLN A 664 REMARK 465 PRO B 539 REMARK 465 THR B 540 REMARK 465 ASN B 541 REMARK 465 ASP B 542 REMARK 465 GLN B 543 REMARK 465 ASN B 656 REMARK 465 THR B 657 REMARK 465 LYS B 658 REMARK 465 ASP B 659 REMARK 465 ASP B 660 REMARK 465 ASP B 661 REMARK 465 THR B 662 REMARK 465 SER B 663 REMARK 465 GLN B 664 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 560 46.76 -81.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNR A3747 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 642 OH REMARK 620 2 MNR A3747 NA 92.2 REMARK 620 3 MNR A3747 NB 84.3 89.4 REMARK 620 4 MNR A3747 NC 90.5 176.9 89.3 REMARK 620 5 MNR A3747 ND 99.4 91.2 176.3 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNR B3747 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 642 OH REMARK 620 2 MNR B3747 NA 84.3 REMARK 620 3 MNR B3747 NB 80.9 88.9 REMARK 620 4 MNR B3747 NC 98.1 177.0 89.7 REMARK 620 5 MNR B3747 ND 102.5 90.9 176.6 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MNR A 3747 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MNR B 3747 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QUG RELATED DB: PDB DBREF 3QUH A 539 664 UNP Q931P4 ISDH_STAAM 539 664 DBREF 3QUH B 539 664 UNP Q931P4 ISDH_STAAM 539 664 SEQRES 1 A 126 PRO THR ASN ASP GLN LEU THR ASP LEU GLN GLU ALA HIS SEQRES 2 A 126 PHE VAL VAL PHE GLU SER GLU GLU ASN SER GLU SER VAL SEQRES 3 A 126 MET ASP GLY PHE VAL GLU HIS PRO PHE TYR THR ALA THR SEQRES 4 A 126 LEU ASN GLY GLN LYS TYR VAL VAL MET LYS THR LYS ASP SEQRES 5 A 126 ASP SER TYR TRP LYS ASP LEU ILE VAL GLU GLY LYS ARG SEQRES 6 A 126 VAL THR THR VAL SER LYS ASP PRO LYS ASN ASN SER ARG SEQRES 7 A 126 THR LEU ILE PHE PRO TYR ILE PRO ASP LYS ALA VAL TYR SEQRES 8 A 126 ASN ALA ILE VAL LYS VAL VAL VAL ALA ASN ILE GLY TYR SEQRES 9 A 126 GLU GLY GLN TYR HIS VAL ARG ILE ILE ASN GLN ASP ILE SEQRES 10 A 126 ASN THR LYS ASP ASP ASP THR SER GLN SEQRES 1 B 126 PRO THR ASN ASP GLN LEU THR ASP LEU GLN GLU ALA HIS SEQRES 2 B 126 PHE VAL VAL PHE GLU SER GLU GLU ASN SER GLU SER VAL SEQRES 3 B 126 MET ASP GLY PHE VAL GLU HIS PRO PHE TYR THR ALA THR SEQRES 4 B 126 LEU ASN GLY GLN LYS TYR VAL VAL MET LYS THR LYS ASP SEQRES 5 B 126 ASP SER TYR TRP LYS ASP LEU ILE VAL GLU GLY LYS ARG SEQRES 6 B 126 VAL THR THR VAL SER LYS ASP PRO LYS ASN ASN SER ARG SEQRES 7 B 126 THR LEU ILE PHE PRO TYR ILE PRO ASP LYS ALA VAL TYR SEQRES 8 B 126 ASN ALA ILE VAL LYS VAL VAL VAL ALA ASN ILE GLY TYR SEQRES 9 B 126 GLU GLY GLN TYR HIS VAL ARG ILE ILE ASN GLN ASP ILE SEQRES 10 B 126 ASN THR LYS ASP ASP ASP THR SER GLN HET MNR A3747 43 HET GOL A 1 6 HET MNR B3747 43 HET GOL B 2 6 HETNAM MNR PROTOPORPHYRIN IX CONTAINING MN HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MNR 2(C34 H32 MN N4 O4 5+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *33(H2 O) HELIX 1 1 VAL A 564 VAL A 569 5 6 HELIX 2 2 ASP A 590 SER A 592 5 3 HELIX 3 3 SER B 563 PHE B 568 1 6 HELIX 4 4 ASP B 590 SER B 592 5 3 HELIX 5 5 PRO B 611 ASN B 614 5 4 HELIX 6 6 ALA B 638 GLY B 641 5 4 SHEET 1 A 5 THR A 545 ALA A 550 0 SHEET 2 A 5 PHE A 573 LEU A 578 -1 O THR A 577 N THR A 545 SHEET 3 A 5 GLN A 581 LYS A 587 -1 O VAL A 585 N TYR A 574 SHEET 4 A 5 SER A 615 PRO A 621 -1 O PHE A 620 N VAL A 584 SHEET 5 A 5 THR A 605 ASP A 610 -1 N ASP A 610 O SER A 615 SHEET 1 B 5 PHE A 552 GLU A 556 0 SHEET 2 B 5 TYR A 642 ASN A 652 -1 O ILE A 651 N VAL A 553 SHEET 3 B 5 VAL A 628 VAL A 637 -1 N VAL A 633 O TYR A 646 SHEET 4 B 5 TRP A 594 VAL A 599 -1 N ILE A 598 O ILE A 632 SHEET 5 B 5 LYS A 602 ARG A 603 -1 O LYS A 602 N VAL A 599 SHEET 1 C 5 THR B 545 ALA B 550 0 SHEET 2 C 5 PHE B 573 LEU B 578 -1 O THR B 577 N THR B 545 SHEET 3 C 5 GLN B 581 THR B 588 -1 O VAL B 585 N TYR B 574 SHEET 4 C 5 SER B 615 PRO B 621 -1 O ARG B 616 N THR B 588 SHEET 5 C 5 THR B 605 ASP B 610 -1 N THR B 605 O ILE B 619 SHEET 1 D 5 PHE B 552 GLU B 556 0 SHEET 2 D 5 TYR B 642 ASN B 652 -1 O ILE B 651 N VAL B 553 SHEET 3 D 5 VAL B 628 VAL B 637 -1 N TYR B 629 O ILE B 650 SHEET 4 D 5 TRP B 594 VAL B 599 -1 N LYS B 595 O LYS B 634 SHEET 5 D 5 LYS B 602 ARG B 603 -1 O LYS B 602 N VAL B 599 LINK OH TYR A 642 MN MNR A3747 1555 1555 2.24 LINK OH TYR B 642 MN MNR B3747 1555 1555 2.28 CISPEP 1 HIS A 571 PRO A 572 0 -1.07 CISPEP 2 HIS B 571 PRO B 572 0 -4.55 SITE 1 AC1 12 GLU A 556 SER A 563 VAL A 564 PHE A 568 SITE 2 AC1 12 TYR A 593 TRP A 594 VAL A 635 TYR A 642 SITE 3 AC1 12 TYR A 646 VAL A 648 VAL B 564 MNR B3747 SITE 1 AC2 4 LYS A 595 ASP A 596 LEU A 597 ARG A 616 SITE 1 AC3 13 VAL A 564 MNR A3747 GLU B 556 SER B 563 SITE 2 AC3 13 VAL B 564 MET B 565 PHE B 568 TYR B 593 SITE 3 AC3 13 TRP B 594 VAL B 635 TYR B 642 TYR B 646 SITE 4 AC3 13 VAL B 648 SITE 1 AC4 4 LYS B 595 ASP B 596 LEU B 597 ARG B 616 CRYST1 41.280 75.930 49.330 90.00 95.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024225 0.000000 0.002158 0.00000 SCALE2 0.000000 0.013170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020352 0.00000