HEADER ISOMERASE 25-FEB-11 3QVJ TITLE ALLANTOIN RACEMASE FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HYDANTOIN RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 272620; SOURCE 4 STRAIN: ATCC 700721 / MGH 78578; SOURCE 5 GENE: HPXA, KPN78578_17580, KPN_01788; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALLANTOIN RACEMASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.FRENCH,D.B.NEAU,S.E.EALICK REVDAT 4 08-NOV-17 3QVJ 1 REMARK REVDAT 3 06-JUL-11 3QVJ 1 JRNL REVDAT 2 22-JUN-11 3QVJ 1 JRNL REVDAT 1 04-MAY-11 3QVJ 0 JRNL AUTH J.B.FRENCH,D.B.NEAU,S.E.EALICK JRNL TITL CHARACTERIZATION OF THE STRUCTURE AND FUNCTION OF KLEBSIELLA JRNL TITL 2 PNEUMONIAE ALLANTOIN RACEMASE. JRNL REF J.MOL.BIOL. V. 410 447 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21616082 JRNL DOI 10.1016/J.JMB.2011.05.016 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3527 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.372 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3597 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4892 ; 1.011 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 5.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;31.771 ;23.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;14.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.269 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2677 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2429 ; 0.385 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3865 ; 0.772 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1168 ; 1.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1025 ; 2.660 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3QVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(111) REMARK 200 DOUBLECRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34504 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1 M SODIUM ACETATE PH REMARK 280 3.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.42000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.42000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.42000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.42000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 63.42000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 124.81900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 62.40950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 108.09642 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 62.40950 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 108.09642 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -63.42000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 124.81900 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -63.42000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -63.42000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -204.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 264 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 265 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 294 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 163 CE NZ REMARK 470 LYS A 173 CD CE NZ REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 234 CD CE NZ REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 HIS B 129 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 137 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLN B 193 CG CD OE1 NE2 REMARK 470 ARG B 196 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 41.24 -93.73 REMARK 500 THR A 118 -166.21 -119.27 REMARK 500 THR A 119 -84.55 -91.53 REMARK 500 ALA B 78 50.44 -91.78 REMARK 500 THR B 118 -165.96 -121.89 REMARK 500 THR B 119 -81.25 -90.50 REMARK 500 ASP B 147 38.03 77.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1 DBREF 3QVJ A 3 247 UNP A6T9E8 A6T9E8_KLEP7 3 247 DBREF 3QVJ B 3 247 UNP A6T9E8 A6T9E8_KLEP7 3 247 SEQADV 3QVJ GLN A 193 UNP A6T9E8 GLU 193 CONFLICT SEQADV 3QVJ GLN B 193 UNP A6T9E8 GLU 193 CONFLICT SEQRES 1 A 245 SER VAL ARG ILE GLN VAL ILE ASN PRO ASN THR SER LEU SEQRES 2 A 245 ALA MSE THR GLU THR ILE GLY ALA ALA ALA ARG ALA VAL SEQRES 3 A 245 ALA ALA PRO GLY THR GLU ILE LEU ALA VAL CYS PRO ARG SEQRES 4 A 245 ALA GLY VAL PRO SER ILE GLU GLY HIS PHE ASP GLU ALA SEQRES 5 A 245 ILE ALA ALA VAL GLY VAL LEU GLU GLN ILE ARG ALA GLY SEQRES 6 A 245 ARG GLU GLN GLY VAL ASP GLY HIS VAL ILE ALA CYS PHE SEQRES 7 A 245 GLY ASP PRO GLY LEU LEU ALA ALA ARG GLU LEU ALA GLN SEQRES 8 A 245 GLY PRO VAL ILE GLY ILE ALA GLU ALA ALA MSE HIS MSE SEQRES 9 A 245 ALA THR MSE VAL ALA THR ARG PHE SER ILE VAL THR THR SEQRES 10 A 245 LEU PRO ARG THR LEU ILE ILE ALA ARG HIS LEU LEU HIS SEQRES 11 A 245 GLN TYR GLY PHE HIS GLN HIS CYS ALA ALA LEU HIS ALA SEQRES 12 A 245 ILE ASP LEU PRO VAL LEU ALA LEU GLU ASP GLY SER GLY SEQRES 13 A 245 LEU ALA GLN GLU LYS VAL ARG GLU ARG CYS ILE ARG ALA SEQRES 14 A 245 LEU LYS GLU ASP GLY SER GLY ALA ILE VAL LEU GLY CYS SEQRES 15 A 245 GLY GLY MSE ALA THR LEU ALA GLN GLN LEU THR ARG GLU SEQRES 16 A 245 LEU ARG VAL PRO VAL ILE ASP GLY VAL SER ALA ALA VAL SEQRES 17 A 245 LYS MSE VAL GLU SER LEU VAL ALA LEU GLY LEU ALA THR SEQRES 18 A 245 SER LYS HIS GLY ASP LEU ALA PHE PRO GLU LYS LYS ALA SEQRES 19 A 245 LEU SER GLY GLN PHE GLN SER LEU ASN PRO PHE SEQRES 1 B 245 SER VAL ARG ILE GLN VAL ILE ASN PRO ASN THR SER LEU SEQRES 2 B 245 ALA MSE THR GLU THR ILE GLY ALA ALA ALA ARG ALA VAL SEQRES 3 B 245 ALA ALA PRO GLY THR GLU ILE LEU ALA VAL CYS PRO ARG SEQRES 4 B 245 ALA GLY VAL PRO SER ILE GLU GLY HIS PHE ASP GLU ALA SEQRES 5 B 245 ILE ALA ALA VAL GLY VAL LEU GLU GLN ILE ARG ALA GLY SEQRES 6 B 245 ARG GLU GLN GLY VAL ASP GLY HIS VAL ILE ALA CYS PHE SEQRES 7 B 245 GLY ASP PRO GLY LEU LEU ALA ALA ARG GLU LEU ALA GLN SEQRES 8 B 245 GLY PRO VAL ILE GLY ILE ALA GLU ALA ALA MSE HIS MSE SEQRES 9 B 245 ALA THR MSE VAL ALA THR ARG PHE SER ILE VAL THR THR SEQRES 10 B 245 LEU PRO ARG THR LEU ILE ILE ALA ARG HIS LEU LEU HIS SEQRES 11 B 245 GLN TYR GLY PHE HIS GLN HIS CYS ALA ALA LEU HIS ALA SEQRES 12 B 245 ILE ASP LEU PRO VAL LEU ALA LEU GLU ASP GLY SER GLY SEQRES 13 B 245 LEU ALA GLN GLU LYS VAL ARG GLU ARG CYS ILE ARG ALA SEQRES 14 B 245 LEU LYS GLU ASP GLY SER GLY ALA ILE VAL LEU GLY CYS SEQRES 15 B 245 GLY GLY MSE ALA THR LEU ALA GLN GLN LEU THR ARG GLU SEQRES 16 B 245 LEU ARG VAL PRO VAL ILE ASP GLY VAL SER ALA ALA VAL SEQRES 17 B 245 LYS MSE VAL GLU SER LEU VAL ALA LEU GLY LEU ALA THR SEQRES 18 B 245 SER LYS HIS GLY ASP LEU ALA PHE PRO GLU LYS LYS ALA SEQRES 19 B 245 LEU SER GLY GLN PHE GLN SER LEU ASN PRO PHE MODRES 3QVJ MSE A 17 MET SELENOMETHIONINE MODRES 3QVJ MSE A 104 MET SELENOMETHIONINE MODRES 3QVJ MSE A 106 MET SELENOMETHIONINE MODRES 3QVJ MSE A 109 MET SELENOMETHIONINE MODRES 3QVJ MSE A 187 MET SELENOMETHIONINE MODRES 3QVJ MSE A 212 MET SELENOMETHIONINE MODRES 3QVJ MSE B 17 MET SELENOMETHIONINE MODRES 3QVJ MSE B 104 MET SELENOMETHIONINE MODRES 3QVJ MSE B 106 MET SELENOMETHIONINE MODRES 3QVJ MSE B 109 MET SELENOMETHIONINE MODRES 3QVJ MSE B 187 MET SELENOMETHIONINE MODRES 3QVJ MSE B 212 MET SELENOMETHIONINE HET MSE A 17 8 HET MSE A 104 8 HET MSE A 106 8 HET MSE A 109 8 HET MSE A 187 8 HET MSE A 212 8 HET MSE B 17 8 HET MSE B 104 8 HET MSE B 106 8 HET MSE B 109 8 HET MSE B 187 8 HET MSE B 212 8 HET CL A 1 1 HET CL B 1 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *175(H2 O) HELIX 1 1 SER A 14 ALA A 29 1 16 HELIX 2 2 GLY A 49 GLY A 71 1 23 HELIX 3 3 GLY A 84 ALA A 92 1 9 HELIX 4 4 ILE A 99 ALA A 111 1 13 HELIX 5 5 LEU A 120 ARG A 122 5 3 HELIX 6 6 THR A 123 GLY A 135 1 13 HELIX 7 7 PHE A 136 GLN A 138 5 3 HELIX 8 8 PRO A 149 ASP A 155 5 7 HELIX 9 9 GLY A 158 ASP A 175 1 18 HELIX 10 10 CYS A 184 THR A 189 5 6 HELIX 11 11 LEU A 190 ARG A 199 1 10 HELIX 12 12 ASP A 204 LEU A 219 1 16 HELIX 13 13 SER A 238 GLN A 242 5 5 HELIX 14 14 SER B 14 ALA B 29 1 16 HELIX 15 15 GLY B 49 GLN B 70 1 22 HELIX 16 16 GLY B 84 ALA B 92 1 9 HELIX 17 17 ILE B 99 ALA B 111 1 13 HELIX 18 18 LEU B 120 ARG B 122 5 3 HELIX 19 19 THR B 123 GLY B 135 1 13 HELIX 20 20 PHE B 136 GLN B 138 5 3 HELIX 21 21 PRO B 149 ASP B 155 5 7 HELIX 22 22 GLY B 158 ASP B 175 1 18 HELIX 23 23 CYS B 184 THR B 189 5 6 HELIX 24 24 LEU B 190 ARG B 199 1 10 HELIX 25 25 ASP B 204 LEU B 219 1 16 HELIX 26 26 SER B 238 ASN B 245 5 8 SHEET 1 A 4 THR A 33 VAL A 38 0 SHEET 2 A 4 VAL A 4 ILE A 9 1 N VAL A 4 O GLU A 34 SHEET 3 A 4 GLY A 74 ILE A 77 1 O VAL A 76 N ILE A 9 SHEET 4 A 4 VAL A 96 GLY A 98 1 O ILE A 97 N HIS A 75 SHEET 1 B 4 CYS A 140 ALA A 145 0 SHEET 2 B 4 PHE A 114 THR A 118 1 N THR A 118 O HIS A 144 SHEET 3 B 4 ALA A 179 LEU A 182 1 O VAL A 181 N SER A 115 SHEET 4 B 4 VAL A 202 ILE A 203 1 O ILE A 203 N ILE A 180 SHEET 1 C 4 THR B 33 VAL B 38 0 SHEET 2 C 4 VAL B 4 ILE B 9 1 N VAL B 4 O GLU B 34 SHEET 3 C 4 GLY B 74 ILE B 77 1 O VAL B 76 N ILE B 9 SHEET 4 C 4 VAL B 96 GLY B 98 1 O ILE B 97 N ILE B 77 SHEET 1 D 4 CYS B 140 ALA B 145 0 SHEET 2 D 4 PHE B 114 THR B 118 1 N THR B 118 O HIS B 144 SHEET 3 D 4 ALA B 179 LEU B 182 1 O VAL B 181 N SER B 115 SHEET 4 D 4 VAL B 202 ILE B 203 1 O ILE B 203 N ILE B 180 LINK C ALA A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N THR A 18 1555 1555 1.33 LINK C ALA A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N HIS A 105 1555 1555 1.34 LINK C HIS A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N ALA A 107 1555 1555 1.33 LINK C THR A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N VAL A 110 1555 1555 1.33 LINK C GLY A 186 N MSE A 187 1555 1555 1.33 LINK C MSE A 187 N ALA A 188 1555 1555 1.33 LINK C LYS A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N VAL A 213 1555 1555 1.33 LINK C ALA B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N THR B 18 1555 1555 1.33 LINK C ALA B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N HIS B 105 1555 1555 1.34 LINK C HIS B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N ALA B 107 1555 1555 1.33 LINK C THR B 108 N MSE B 109 1555 1555 1.33 LINK C MSE B 109 N VAL B 110 1555 1555 1.33 LINK C GLY B 186 N MSE B 187 1555 1555 1.34 LINK C MSE B 187 N ALA B 188 1555 1555 1.33 LINK C LYS B 211 N MSE B 212 1555 1555 1.33 LINK C MSE B 212 N VAL B 213 1555 1555 1.33 SITE 1 AC1 4 CYS A 79 PHE A 80 CYS A 184 GLY A 185 SITE 1 AC2 4 CYS B 79 PHE B 80 CYS B 184 GLY B 185 CRYST1 124.819 124.819 126.840 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008012 0.004626 0.000000 0.00000 SCALE2 0.000000 0.009251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007884 0.00000