HEADER ISOMERASE 25-FEB-11 3QVT TITLE L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS WILD- TITLE 2 TYPE WITH THE INTERMEDIATE 5-KETO 1-PHOSPHO GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYO-INOSITOL-1-PHOSPHATE SYNTHASE (INO1); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MIPS; COMPND 5 EC: 5.5.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF1794, AF_1794; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NEELON,M.F.ROBERTS,B.STEC REVDAT 5 20-SEP-23 3QVT 1 REMARK REVDAT 4 07-DEC-22 3QVT 1 JRNL REMARK REVDAT 3 17-JUL-19 3QVT 1 REMARK REVDAT 2 07-MAR-18 3QVT 1 REMARK REVDAT 1 11-JAN-12 3QVT 0 JRNL AUTH K.NEELON,M.F.ROBERTS,B.STEC JRNL TITL CRYSTAL STRUCTURE OF A TRAPPED CATALYTIC INTERMEDIATE JRNL TITL 2 SUGGESTS THAT FORCED ATOMIC PROXIMITY DRIVES THE CATALYSIS JRNL TITL 3 OF MIPS. JRNL REF BIOPHYS.J. V. 101 2816 2011 JRNL REFN ESSN 1542-0086 JRNL PMID 22261071 JRNL DOI 10.1016/J.BPJ.2011.10.038 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1817 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 1.71000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.229 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3361 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4568 ; 1.796 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 6.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;32.604 ;24.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;16.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2495 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1630 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2300 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 212 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1998 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3227 ; 1.335 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 2.330 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1323 ; 3.432 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0126 17.9551 9.6684 REMARK 3 T TENSOR REMARK 3 T11: -0.0256 T22: -0.0479 REMARK 3 T33: -0.0328 T12: 0.0853 REMARK 3 T13: -0.0108 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.5369 L22: 1.4911 REMARK 3 L33: 1.7075 L12: 0.3550 REMARK 3 L13: 0.4553 L23: -0.4282 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: 0.0209 S13: -0.1837 REMARK 3 S21: -0.1119 S22: -0.0971 S23: 0.0215 REMARK 3 S31: 0.2260 S32: 0.0969 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5878 22.3696 27.5693 REMARK 3 T TENSOR REMARK 3 T11: -0.0625 T22: -0.0484 REMARK 3 T33: -0.0821 T12: 0.0412 REMARK 3 T13: -0.0036 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.2232 L22: 0.7797 REMARK 3 L33: 3.5274 L12: 0.0939 REMARK 3 L13: 0.6219 L23: 0.1594 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.1639 S13: -0.0834 REMARK 3 S21: 0.1148 S22: -0.0137 S23: 0.0604 REMARK 3 S31: -0.0513 S32: -0.0101 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3786 38.0258 15.6337 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: -0.0257 REMARK 3 T33: -0.0159 T12: -0.0194 REMARK 3 T13: -0.0204 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.2731 L22: 0.9672 REMARK 3 L33: 0.3595 L12: -0.4257 REMARK 3 L13: 0.1149 L23: -0.4865 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: -0.0118 S13: 0.0104 REMARK 3 S21: 0.0405 S22: -0.0906 S23: 0.0033 REMARK 3 S31: -0.0063 S32: 0.2642 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8518 39.4258 19.6803 REMARK 3 T TENSOR REMARK 3 T11: 0.0026 T22: 0.0755 REMARK 3 T33: -0.0191 T12: 0.0094 REMARK 3 T13: -0.0221 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 1.0163 L22: 4.0628 REMARK 3 L33: 3.5888 L12: -0.1070 REMARK 3 L13: -0.8547 L23: -3.3201 REMARK 3 S TENSOR REMARK 3 S11: 0.1424 S12: -0.3515 S13: 0.0072 REMARK 3 S21: 0.3572 S22: -0.1005 S23: -0.0531 REMARK 3 S31: -0.2495 S32: 0.1946 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0914 38.6138 8.9196 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: -0.0538 REMARK 3 T33: -0.0301 T12: -0.0021 REMARK 3 T13: 0.0044 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4020 L22: 0.7180 REMARK 3 L33: 0.5668 L12: -0.3749 REMARK 3 L13: 0.2444 L23: -0.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.0260 S13: 0.0369 REMARK 3 S21: 0.0387 S22: -0.0843 S23: -0.0522 REMARK 3 S31: -0.0443 S32: 0.2477 S33: 0.0251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC BLUE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26699 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1U1I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 14% PEG400, REMARK 280 15% PEG1500, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.79500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.51000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.79500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.51000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.79500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.51000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.79500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.51000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -200.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.59000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 89.59000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 525 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 584 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 589 O HOH A 618 1.75 REMARK 500 O HOH A 459 O HOH A 514 1.90 REMARK 500 OE2 GLU A 247 O HOH A 473 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 -9.75 -55.40 REMARK 500 SER A 50 113.42 -162.96 REMARK 500 ASN A 63 172.80 179.38 REMARK 500 ASP A 139 -164.36 -127.79 REMARK 500 ALA A 206 35.73 -82.65 REMARK 500 ASP A 225 105.42 87.23 REMARK 500 ASP A 259 -172.96 59.75 REMARK 500 TYR A 291 105.62 -55.39 REMARK 500 VAL A 303 -135.01 40.21 REMARK 500 SER A 368 76.97 -119.40 REMARK 500 ASN A 376 124.36 -35.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 LIGANDS PO4 A 519 AND KPG A 520 HAVE PARTIAL OCCUPANCY IN THE SAME REMARK 600 BINDING SITE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KPG A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 525 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QVS RELATED DB: PDB REMARK 900 MIPS FROM A. FULGIDUS WILD-TYPE I222 REMARK 900 RELATED ID: 1U1I RELATED DB: PDB REMARK 900 MIPS FROM A. FULGIDUS WILD-TYPE P1 REMARK 900 RELATED ID: 1RM0 RELATED DB: PDB REMARK 900 MIPS FROM S. CEREVISIAE REMARK 900 RELATED ID: 3QVW RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS MUTANT K278A REMARK 900 RELATED ID: 3QVX RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS MUTANT K367A REMARK 900 RELATED ID: 3QW2 RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS MUTANT N255A DBREF 3QVT A 1 392 UNP O28480 O28480_ARCFU 1 392 SEQRES 1 A 392 MET LYS VAL TRP LEU VAL GLY ALA TYR GLY ILE VAL SER SEQRES 2 A 392 THR THR ALA MET VAL GLY ALA ARG ALA ILE GLU ARG GLY SEQRES 3 A 392 ILE ALA PRO LYS ILE GLY LEU VAL SER GLU LEU PRO HIS SEQRES 4 A 392 PHE GLU GLY ILE GLU LYS TYR ALA PRO PHE SER PHE GLU SEQRES 5 A 392 PHE GLY GLY HIS GLU ILE ARG LEU LEU SER ASN ALA TYR SEQRES 6 A 392 GLU ALA ALA LYS GLU HIS TRP GLU LEU ASN ARG HIS PHE SEQRES 7 A 392 ASP ARG GLU ILE LEU GLU ALA VAL LYS SER ASP LEU GLU SEQRES 8 A 392 GLY ILE VAL ALA ARG LYS GLY THR ALA LEU ASN CYS GLY SEQRES 9 A 392 SER GLY ILE LYS GLU LEU GLY ASP ILE LYS THR LEU GLU SEQRES 10 A 392 GLY GLU GLY LEU SER LEU ALA GLU MET VAL SER ARG ILE SEQRES 11 A 392 GLU GLU ASP ILE LYS SER PHE ALA ASP ASP GLU THR VAL SEQRES 12 A 392 VAL ILE ASN VAL ALA SER THR GLU PRO LEU PRO ASN TYR SEQRES 13 A 392 SER GLU GLU TYR HIS GLY SER LEU GLU GLY PHE GLU ARG SEQRES 14 A 392 MET ILE ASP GLU ASP ARG LYS GLU TYR ALA SER ALA SER SEQRES 15 A 392 MET LEU TYR ALA TYR ALA ALA LEU LYS LEU GLY LEU PRO SEQRES 16 A 392 TYR ALA ASN PHE THR PRO SER PRO GLY SER ALA ILE PRO SEQRES 17 A 392 ALA LEU LYS GLU LEU ALA GLU LYS LYS GLY VAL PRO HIS SEQRES 18 A 392 ALA GLY ASN ASP GLY LYS THR GLY GLU THR LEU VAL LYS SEQRES 19 A 392 THR THR LEU ALA PRO MET PHE ALA TYR ARG ASN MET GLU SEQRES 20 A 392 VAL VAL GLY TRP MET SER TYR ASN ILE LEU GLY ASP TYR SEQRES 21 A 392 ASP GLY LYS VAL LEU SER ALA ARG ASP ASN LYS GLU SER SEQRES 22 A 392 LYS VAL LEU SER LYS ASP LYS VAL LEU GLU LYS MET LEU SEQRES 23 A 392 GLY TYR SER PRO TYR SER ILE THR GLU ILE GLN TYR PHE SEQRES 24 A 392 PRO SER LEU VAL ASP ASN LYS THR ALA PHE ASP PHE VAL SEQRES 25 A 392 HIS PHE LYS GLY PHE LEU GLY LYS LEU MET LYS PHE TYR SEQRES 26 A 392 PHE ILE TRP ASP ALA ILE ASP ALA ILE VAL ALA ALA PRO SEQRES 27 A 392 LEU ILE LEU ASP ILE ALA ARG PHE LEU LEU PHE ALA LYS SEQRES 28 A 392 LYS LYS GLY VAL LYS GLY VAL VAL LYS GLU MET ALA PHE SEQRES 29 A 392 PHE PHE LYS SER PRO MET ASP THR ASN VAL ILE ASN THR SEQRES 30 A 392 HIS GLU GLN PHE VAL VAL LEU LYS GLU TRP TYR SER ASN SEQRES 31 A 392 LEU LYS HET PO4 A 395 5 HET NAI A 396 44 HET PG4 A 399 13 HET PO4 A 519 5 HET KPG A 520 17 HET GOL A 521 6 HET NA A 525 1 HETNAM PO4 PHOSPHATE ION HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM KPG [(3S,4R,5S)-3,4,5,6,6-PENTAHYDROXY-2-OXO-HEXYL] HETNAM 2 KPG DIHYDROGEN PHOSPHATE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN NAI NADH HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 2(O4 P 3-) FORMUL 3 NAI C21 H29 N7 O14 P2 FORMUL 4 PG4 C8 H18 O5 FORMUL 6 KPG C6 H13 O10 P FORMUL 7 GOL C3 H8 O3 FORMUL 8 NA NA 1+ FORMUL 9 HOH *219(H2 O) HELIX 1 1 GLY A 10 GLY A 26 1 17 HELIX 2 2 LEU A 33 GLU A 41 5 9 HELIX 3 3 GLY A 42 TYR A 46 5 5 HELIX 4 4 ASN A 63 ARG A 76 1 14 HELIX 5 5 ASP A 79 VAL A 86 1 8 HELIX 6 6 VAL A 86 GLY A 92 1 7 HELIX 7 7 GLY A 104 GLY A 111 5 8 HELIX 8 8 LEU A 116 GLY A 120 5 5 HELIX 9 9 SER A 122 SER A 136 1 15 HELIX 10 10 SER A 157 GLY A 162 1 6 HELIX 11 11 SER A 163 GLU A 173 1 11 HELIX 12 12 ARG A 175 ALA A 179 5 5 HELIX 13 13 SER A 180 LEU A 192 1 13 HELIX 14 14 ILE A 207 GLY A 218 1 12 HELIX 15 15 GLY A 229 ARG A 244 1 16 HELIX 16 16 GLY A 258 SER A 266 1 9 HELIX 17 17 ALA A 267 LYS A 280 1 14 HELIX 18 18 LYS A 280 GLY A 287 1 8 HELIX 19 19 PRO A 300 VAL A 303 5 4 HELIX 20 20 PHE A 317 GLY A 319 5 3 HELIX 21 21 ILE A 331 LYS A 353 1 23 HELIX 22 22 LYS A 360 PHE A 366 5 7 HELIX 23 23 ASN A 376 LYS A 392 1 17 SHEET 1 A 7 ARG A 96 LYS A 97 0 SHEET 2 A 7 GLU A 52 GLU A 57 1 N GLY A 55 O ARG A 96 SHEET 3 A 7 LYS A 2 VAL A 6 1 N VAL A 3 O GLU A 52 SHEET 4 A 7 THR A 142 ASN A 146 1 O VAL A 143 N TRP A 4 SHEET 5 A 7 TYR A 196 ASN A 198 1 O ALA A 197 N ASN A 146 SHEET 6 A 7 PRO A 220 ALA A 222 1 O ALA A 222 N TYR A 196 SHEET 7 A 7 GLY A 357 VAL A 358 1 O GLY A 357 N HIS A 221 SHEET 1 B 4 TYR A 291 TYR A 298 0 SHEET 2 B 4 GLU A 247 LEU A 257 1 N SER A 253 O ILE A 293 SHEET 3 B 4 THR A 307 LYS A 315 -1 O PHE A 309 N TYR A 254 SHEET 4 B 4 LEU A 321 ASP A 329 -1 O PHE A 324 N VAL A 312 LINK OD2 ASP A 329 NA NA A 525 1555 1555 2.53 CISPEP 1 GLY A 223 ASN A 224 0 2.74 SITE 1 AC1 3 LYS A 360 THR A 372 ASN A 373 SITE 1 AC2 32 GLY A 7 TYR A 9 GLY A 10 ILE A 11 SITE 2 AC2 32 VAL A 12 GLU A 57 ARG A 59 THR A 99 SITE 3 AC2 32 ALA A 100 CYS A 103 VAL A 147 ALA A 148 SITE 4 AC2 32 SER A 149 THR A 150 TYR A 185 PHE A 199 SITE 5 AC2 32 ASP A 225 GLY A 226 THR A 228 TYR A 260 SITE 6 AC2 32 ASP A 261 LYS A 274 ASP A 332 LYS A 367 SITE 7 AC2 32 HOH A 412 HOH A 415 HOH A 418 HOH A 430 SITE 8 AC2 32 HOH A 434 HOH A 494 PO4 A 519 KPG A 520 SITE 1 AC3 7 GLU A 131 GLU A 132 LYS A 135 SER A 289 SITE 2 AC3 7 PRO A 290 TYR A 291 SER A 292 SITE 1 AC4 9 THR A 228 GLY A 229 GLU A 230 THR A 231 SITE 2 AC4 9 LYS A 278 LYS A 306 LYS A 367 NAI A 396 SITE 3 AC4 9 HOH A 438 SITE 1 AC5 18 THR A 228 GLY A 229 GLU A 230 THR A 231 SITE 2 AC5 18 LEU A 232 ASN A 255 LEU A 257 ASP A 261 SITE 3 AC5 18 LEU A 265 LYS A 274 LYS A 278 ILE A 296 SITE 4 AC5 18 LYS A 306 ASP A 332 LYS A 367 HOH A 393 SITE 5 AC5 18 NAI A 396 HOH A 438 SITE 1 AC6 10 ASN A 305 LYS A 320 LEU A 321 MET A 322 SITE 2 AC6 10 LYS A 323 ASP A 329 ILE A 331 HOH A 584 SITE 3 AC6 10 HOH A 603 HOH A 609 SITE 1 AC7 2 TYR A 325 ASP A 329 CRYST1 82.780 89.590 105.020 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009522 0.00000