HEADER ISOMERASE 26-FEB-11 3QVW TITLE L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS MUTANT TITLE 2 K278A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYO-INOSITOL-1-PHOSPHATE SYNTHASE (INO1); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MIPS; COMPND 5 EC: 5.5.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF1794, AF_1794; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NEELON,M.F.ROBERTS,B.STEC REVDAT 5 20-SEP-23 3QVW 1 REMARK REVDAT 4 07-DEC-22 3QVW 1 JRNL REMARK SEQADV REVDAT 3 17-JUL-19 3QVW 1 REMARK REVDAT 2 07-MAR-18 3QVW 1 REMARK REVDAT 1 11-JAN-12 3QVW 0 JRNL AUTH K.NEELON,M.F.ROBERTS,B.STEC JRNL TITL CRYSTAL STRUCTURE OF A TRAPPED CATALYTIC INTERMEDIATE JRNL TITL 2 SUGGESTS THAT FORCED ATOMIC PROXIMITY DRIVES THE CATALYSIS JRNL TITL 3 OF MIPS. JRNL REF BIOPHYS.J. V. 101 2816 2011 JRNL REFN ESSN 1542-0086 JRNL PMID 22261071 JRNL DOI 10.1016/J.BPJ.2011.10.038 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 24770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1320 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 2.12000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.251 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3344 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4541 ; 1.927 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 6.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;31.161 ;24.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;16.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 492 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2493 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1785 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2299 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.232 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 99 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1995 ; 0.793 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3220 ; 1.364 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1394 ; 2.369 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1304 ; 3.287 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8925 18.1441 9.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.0028 T22: -0.0486 REMARK 3 T33: -0.0228 T12: 0.0632 REMARK 3 T13: -0.0055 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.4459 L22: 0.3244 REMARK 3 L33: 0.7637 L12: 0.0845 REMARK 3 L13: 0.0886 L23: -0.3567 REMARK 3 S TENSOR REMARK 3 S11: 0.0950 S12: 0.0143 S13: -0.0675 REMARK 3 S21: -0.0333 S22: -0.0388 S23: 0.0244 REMARK 3 S31: 0.1389 S32: 0.0458 S33: -0.0562 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4204 22.5248 27.6111 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: -0.0134 REMARK 3 T33: -0.0645 T12: 0.0330 REMARK 3 T13: -0.0095 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.5866 L22: 0.5497 REMARK 3 L33: 1.4845 L12: 0.1058 REMARK 3 L13: 0.4207 L23: 0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.0732 S13: -0.0296 REMARK 3 S21: 0.0703 S22: 0.0216 S23: 0.0117 REMARK 3 S31: 0.0026 S32: 0.0120 S33: -0.0151 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2645 38.1805 15.6059 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: -0.0217 REMARK 3 T33: -0.0017 T12: -0.0092 REMARK 3 T13: -0.0176 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.2303 L22: 0.5563 REMARK 3 L33: 0.1900 L12: -0.2006 REMARK 3 L13: -0.0577 L23: -0.2085 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.0891 S13: -0.0266 REMARK 3 S21: 0.0994 S22: -0.0850 S23: 0.0709 REMARK 3 S31: -0.0360 S32: 0.1913 S33: 0.0501 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8272 39.8038 19.8596 REMARK 3 T TENSOR REMARK 3 T11: -0.0149 T22: -0.0461 REMARK 3 T33: -0.0134 T12: -0.0052 REMARK 3 T13: -0.0153 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.7223 L22: 0.4502 REMARK 3 L33: 1.9644 L12: -0.2939 REMARK 3 L13: -0.2758 L23: -0.6718 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.2566 S13: -0.0381 REMARK 3 S21: 0.1643 S22: -0.1326 S23: 0.0711 REMARK 3 S31: 0.0087 S32: 0.4800 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0089 38.8136 8.9136 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: -0.0664 REMARK 3 T33: 0.0339 T12: 0.0006 REMARK 3 T13: -0.0075 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0271 L22: 0.2452 REMARK 3 L33: 0.4156 L12: -0.0487 REMARK 3 L13: 0.0047 L23: -0.2642 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.0646 S13: 0.0611 REMARK 3 S21: -0.0239 S22: -0.0595 S23: 0.0294 REMARK 3 S31: -0.0237 S32: 0.1553 S33: 0.0188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC BLUE REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1U1I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 14% PEG400, REMARK 280 15% PEG1500, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.43250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.43250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.13000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.97000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.43250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.13000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.97000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.43250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -233.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.94000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 89.94000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 525 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 610 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 590 O HOH A 619 1.68 REMARK 500 NZ LYS A 97 OE2 GLU A 119 2.01 REMARK 500 NZ LYS A 263 O HOH A 584 2.02 REMARK 500 O HOH A 631 O HOH A 632 2.11 REMARK 500 O HOH A 429 O HOH A 554 2.15 REMARK 500 O TYR A 298 O HOH A 564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 80 O HOH A 458 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 311 CD1 PHE A 311 CE1 0.127 REMARK 500 PHE A 324 CD1 PHE A 324 CE1 0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 338 C - N - CA ANGL. DEV. = -9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 -5.48 -57.03 REMARK 500 LYS A 87 -71.92 -49.55 REMARK 500 ALA A 100 37.03 -97.15 REMARK 500 ASP A 139 -157.15 -134.88 REMARK 500 ASP A 225 100.45 85.49 REMARK 500 ASP A 259 177.50 59.21 REMARK 500 PHE A 299 88.49 -161.14 REMARK 500 VAL A 303 -125.20 43.04 REMARK 500 LEU A 318 -2.74 68.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 525 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QVS RELATED DB: PDB REMARK 900 L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS REMARK 900 I222 FORM REMARK 900 RELATED ID: 1U1I RELATED DB: PDB REMARK 900 L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS P1 REMARK 900 FORM REMARK 900 RELATED ID: 1RM0 RELATED DB: PDB REMARK 900 L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM S. CEREVISIAE REMARK 900 RELATED ID: 3QVT RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS WILD-TYPE WITH THE INTERMEDIATE 5- REMARK 900 KETO 1-PHOSPHO GLUCOSE REMARK 900 RELATED ID: 3QVX RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS MUTANT K367A REMARK 900 RELATED ID: 3QW2 RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS MUTANT N255A DBREF 3QVW A 1 392 UNP O28480 O28480_ARCFU 1 392 SEQADV 3QVW ALA A 278 UNP O28480 LYS 278 ENGINEERED MUTATION SEQRES 1 A 392 MET LYS VAL TRP LEU VAL GLY ALA TYR GLY ILE VAL SER SEQRES 2 A 392 THR THR ALA MET VAL GLY ALA ARG ALA ILE GLU ARG GLY SEQRES 3 A 392 ILE ALA PRO LYS ILE GLY LEU VAL SER GLU LEU PRO HIS SEQRES 4 A 392 PHE GLU GLY ILE GLU LYS TYR ALA PRO PHE SER PHE GLU SEQRES 5 A 392 PHE GLY GLY HIS GLU ILE ARG LEU LEU SER ASN ALA TYR SEQRES 6 A 392 GLU ALA ALA LYS GLU HIS TRP GLU LEU ASN ARG HIS PHE SEQRES 7 A 392 ASP ARG GLU ILE LEU GLU ALA VAL LYS SER ASP LEU GLU SEQRES 8 A 392 GLY ILE VAL ALA ARG LYS GLY THR ALA LEU ASN CYS GLY SEQRES 9 A 392 SER GLY ILE LYS GLU LEU GLY ASP ILE LYS THR LEU GLU SEQRES 10 A 392 GLY GLU GLY LEU SER LEU ALA GLU MET VAL SER ARG ILE SEQRES 11 A 392 GLU GLU ASP ILE LYS SER PHE ALA ASP ASP GLU THR VAL SEQRES 12 A 392 VAL ILE ASN VAL ALA SER THR GLU PRO LEU PRO ASN TYR SEQRES 13 A 392 SER GLU GLU TYR HIS GLY SER LEU GLU GLY PHE GLU ARG SEQRES 14 A 392 MET ILE ASP GLU ASP ARG LYS GLU TYR ALA SER ALA SER SEQRES 15 A 392 MET LEU TYR ALA TYR ALA ALA LEU LYS LEU GLY LEU PRO SEQRES 16 A 392 TYR ALA ASN PHE THR PRO SER PRO GLY SER ALA ILE PRO SEQRES 17 A 392 ALA LEU LYS GLU LEU ALA GLU LYS LYS GLY VAL PRO HIS SEQRES 18 A 392 ALA GLY ASN ASP GLY LYS THR GLY GLU THR LEU VAL LYS SEQRES 19 A 392 THR THR LEU ALA PRO MET PHE ALA TYR ARG ASN MET GLU SEQRES 20 A 392 VAL VAL GLY TRP MET SER TYR ASN ILE LEU GLY ASP TYR SEQRES 21 A 392 ASP GLY LYS VAL LEU SER ALA ARG ASP ASN LYS GLU SER SEQRES 22 A 392 LYS VAL LEU SER ALA ASP LYS VAL LEU GLU LYS MET LEU SEQRES 23 A 392 GLY TYR SER PRO TYR SER ILE THR GLU ILE GLN TYR PHE SEQRES 24 A 392 PRO SER LEU VAL ASP ASN LYS THR ALA PHE ASP PHE VAL SEQRES 25 A 392 HIS PHE LYS GLY PHE LEU GLY LYS LEU MET LYS PHE TYR SEQRES 26 A 392 PHE ILE TRP ASP ALA ILE ASP ALA ILE VAL ALA ALA PRO SEQRES 27 A 392 LEU ILE LEU ASP ILE ALA ARG PHE LEU LEU PHE ALA LYS SEQRES 28 A 392 LYS LYS GLY VAL LYS GLY VAL VAL LYS GLU MET ALA PHE SEQRES 29 A 392 PHE PHE LYS SER PRO MET ASP THR ASN VAL ILE ASN THR SEQRES 30 A 392 HIS GLU GLN PHE VAL VAL LEU LYS GLU TRP TYR SER ASN SEQRES 31 A 392 LEU LYS HET PO4 A 395 5 HET NAD A 396 44 HET PG4 A 399 13 HET PO4 A 520 5 HET GOL A 521 6 HET GOL A 397 6 HET GOL A 398 6 HET NA A 525 1 HETNAM PO4 PHOSPHATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 2(O4 P 3-) FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 PG4 C8 H18 O5 FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 NA NA 1+ FORMUL 10 HOH *235(H2 O) HELIX 1 1 GLY A 10 ARG A 25 1 16 HELIX 2 2 LEU A 33 GLU A 41 5 9 HELIX 3 3 GLY A 42 TYR A 46 5 5 HELIX 4 4 ASN A 63 ARG A 76 1 14 HELIX 5 5 ASP A 79 GLY A 92 1 14 HELIX 6 6 GLY A 104 GLY A 111 5 8 HELIX 7 7 LEU A 116 GLY A 120 5 5 HELIX 8 8 SER A 122 ALA A 138 1 17 HELIX 9 9 SER A 157 GLY A 162 1 6 HELIX 10 10 SER A 163 ASP A 174 1 12 HELIX 11 11 ARG A 175 ALA A 179 5 5 HELIX 12 12 SER A 180 LEU A 192 1 13 HELIX 13 13 ILE A 207 LYS A 217 1 11 HELIX 14 14 GLY A 229 ALA A 238 1 10 HELIX 15 15 ALA A 238 ARG A 244 1 7 HELIX 16 16 GLY A 258 LEU A 265 1 8 HELIX 17 17 ALA A 267 SER A 277 1 11 HELIX 18 18 LYS A 280 GLY A 287 1 8 HELIX 19 19 PHE A 317 GLY A 319 5 3 HELIX 20 20 ILE A 331 LYS A 353 1 23 HELIX 21 21 LYS A 360 PHE A 366 5 7 HELIX 22 22 ASN A 376 LYS A 392 1 17 SHEET 1 A 7 ARG A 96 LYS A 97 0 SHEET 2 A 7 GLU A 52 GLU A 57 1 N GLU A 57 O ARG A 96 SHEET 3 A 7 LYS A 2 VAL A 6 1 N LEU A 5 O GLY A 54 SHEET 4 A 7 THR A 142 ASN A 146 1 O ILE A 145 N TRP A 4 SHEET 5 A 7 TYR A 196 ASN A 198 1 O ALA A 197 N ASN A 146 SHEET 6 A 7 PRO A 220 ALA A 222 1 O ALA A 222 N TYR A 196 SHEET 7 A 7 GLY A 357 VAL A 358 1 O GLY A 357 N HIS A 221 SHEET 1 B 4 TYR A 291 TYR A 298 0 SHEET 2 B 4 GLU A 247 LEU A 257 1 N TRP A 251 O TYR A 291 SHEET 3 B 4 THR A 307 LYS A 315 -1 O LYS A 315 N GLU A 247 SHEET 4 B 4 LEU A 321 ASP A 329 -1 O PHE A 324 N VAL A 312 LINK OD2 ASP A 329 NA NA A 525 1555 1555 2.49 CISPEP 1 GLY A 223 ASN A 224 0 -6.93 SITE 1 AC1 4 LYS A 360 THR A 372 ASN A 373 VAL A 374 SITE 1 AC2 33 GLY A 7 TYR A 9 GLY A 10 ILE A 11 SITE 2 AC2 33 VAL A 12 GLU A 57 ARG A 59 THR A 99 SITE 3 AC2 33 CYS A 103 ILE A 107 VAL A 147 ALA A 148 SITE 4 AC2 33 SER A 149 THR A 150 TYR A 185 PHE A 199 SITE 5 AC2 33 THR A 200 ASP A 225 GLY A 226 THR A 228 SITE 6 AC2 33 TYR A 260 ASP A 261 LYS A 274 ASP A 332 SITE 7 AC2 33 ALA A 336 GOL A 397 HOH A 414 HOH A 417 SITE 8 AC2 33 HOH A 420 HOH A 427 HOH A 432 HOH A 436 SITE 9 AC2 33 HOH A 496 SITE 1 AC3 7 GLU A 131 GLU A 132 LYS A 135 SER A 289 SITE 2 AC3 7 PRO A 290 TYR A 291 SER A 292 SITE 1 AC4 9 THR A 228 GLY A 229 GLU A 230 THR A 231 SITE 2 AC4 9 LYS A 306 LYS A 367 GOL A 397 HOH A 440 SITE 3 AC4 9 HOH A 493 SITE 1 AC5 6 ASN A 75 SER A 301 LEU A 302 ASN A 305 SITE 2 AC5 6 LYS A 323 ILE A 331 SITE 1 AC6 7 ASP A 261 LYS A 274 LYS A 306 ASP A 332 SITE 2 AC6 7 LYS A 367 NAD A 396 PO4 A 520 SITE 1 AC7 4 LYS A 217 LYS A 263 TYR A 298 HOH A 583 SITE 1 AC8 2 TYR A 325 ASP A 329 CRYST1 82.260 89.940 104.865 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012157 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009536 0.00000