HEADER ISOMERASE 26-FEB-11 3QVX TITLE L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS MUTANT TITLE 2 K367A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYO-INOSITOL-1-PHOSPHATE SYNTHASE (INO1); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MIPS; COMPND 5 EC: 5.5.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF1794, AF_1794; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NEELON,M.F.ROBERTS,B.STEC REVDAT 5 20-SEP-23 3QVX 1 REMARK REVDAT 4 07-DEC-22 3QVX 1 JRNL REMARK SEQADV REVDAT 3 17-JUL-19 3QVX 1 REMARK REVDAT 2 07-MAR-18 3QVX 1 REMARK REVDAT 1 11-JAN-12 3QVX 0 JRNL AUTH K.NEELON,M.F.ROBERTS,B.STEC JRNL TITL CRYSTAL STRUCTURE OF A TRAPPED CATALYTIC INTERMEDIATE JRNL TITL 2 SUGGESTS THAT FORCED ATOMIC PROXIMITY DRIVES THE CATALYSIS JRNL TITL 3 OF MIPS. JRNL REF BIOPHYS.J. V. 101 2816 2011 JRNL REFN ESSN 1542-0086 JRNL PMID 22261071 JRNL DOI 10.1016/J.BPJ.2011.10.038 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 28479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 2.38000 REMARK 3 B33 (A**2) : -2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3346 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4540 ; 1.533 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 421 ; 5.610 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;31.800 ;24.514 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;15.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.728 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2484 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1670 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2279 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 224 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 140 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.213 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1992 ; 0.660 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3213 ; 1.160 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1398 ; 2.115 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1311 ; 3.141 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8668 17.7912 9.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: -0.0847 REMARK 3 T33: -0.0646 T12: 0.1380 REMARK 3 T13: -0.0075 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.5233 L22: 0.5721 REMARK 3 L33: 1.4061 L12: 0.0657 REMARK 3 L13: -0.1216 L23: -0.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0885 S12: 0.0846 S13: -0.1272 REMARK 3 S21: -0.0948 S22: -0.0334 S23: 0.0575 REMARK 3 S31: 0.4795 S32: 0.2641 S33: -0.0551 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4342 22.2607 27.5325 REMARK 3 T TENSOR REMARK 3 T11: -0.0212 T22: -0.0724 REMARK 3 T33: -0.0635 T12: 0.0794 REMARK 3 T13: -0.0036 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.5508 L22: 0.5261 REMARK 3 L33: 2.3344 L12: -0.2830 REMARK 3 L13: 0.4268 L23: -0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.1466 S13: -0.0621 REMARK 3 S21: 0.0549 S22: 0.0105 S23: 0.0155 REMARK 3 S31: 0.1350 S32: 0.1195 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2680 37.8647 15.5620 REMARK 3 T TENSOR REMARK 3 T11: -0.0358 T22: 0.0597 REMARK 3 T33: -0.0162 T12: 0.0146 REMARK 3 T13: -0.0098 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.0041 L22: 0.3936 REMARK 3 L33: 0.4980 L12: -0.0160 REMARK 3 L13: -0.0281 L23: -0.2093 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.0690 S13: 0.0124 REMARK 3 S21: 0.0536 S22: -0.0738 S23: 0.0033 REMARK 3 S31: -0.0103 S32: 0.3079 S33: 0.0368 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9286 39.4128 19.6344 REMARK 3 T TENSOR REMARK 3 T11: -0.0246 T22: -0.0544 REMARK 3 T33: 0.0182 T12: 0.0095 REMARK 3 T13: -0.0417 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.4815 L22: 1.7810 REMARK 3 L33: 3.1369 L12: -0.4683 REMARK 3 L13: -0.4692 L23: -1.4284 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.0252 S13: 0.0941 REMARK 3 S21: 0.4077 S22: -0.0459 S23: 0.0332 REMARK 3 S31: -0.1475 S32: 0.2472 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0413 38.4723 8.8479 REMARK 3 T TENSOR REMARK 3 T11: -0.0514 T22: 0.0256 REMARK 3 T33: -0.0368 T12: 0.0120 REMARK 3 T13: -0.0037 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.1233 L22: 0.5005 REMARK 3 L33: 0.9477 L12: -0.1636 REMARK 3 L13: 0.0847 L23: -0.3338 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.0376 S13: 0.0513 REMARK 3 S21: 0.0411 S22: -0.1217 S23: -0.0051 REMARK 3 S31: 0.0041 S32: 0.3073 S33: 0.0731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC BLUE REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 68.041 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.21400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1U1I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 14% PEG400, REMARK 280 15% PEG1500, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.03500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.64000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.48500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.03500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.64000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.48500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.03500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.64000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.48500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.03500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.64000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -306.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.28000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 89.28000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 410 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 432 O HOH A 432 3555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 139 -163.36 -125.84 REMARK 500 ALA A 206 25.03 -76.08 REMARK 500 ASP A 225 110.12 75.42 REMARK 500 ASP A 259 -177.11 63.35 REMARK 500 PHE A 299 87.30 -159.05 REMARK 500 VAL A 303 -131.10 45.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QVS RELATED DB: PDB REMARK 900 L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS REMARK 900 I222 FORM REMARK 900 RELATED ID: 1U1I RELATED DB: PDB REMARK 900 L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS P1 REMARK 900 FORM REMARK 900 RELATED ID: 1RM0 RELATED DB: PDB REMARK 900 L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM S.CEREVISIAE REMARK 900 RELATED ID: 3QVT RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS WILD-TYPE WITH THE INTERMEDIATE 5- REMARK 900 KETO 1-PHOSPHO GLUCOSE REMARK 900 RELATED ID: 3QVW RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS MUTANT K278A REMARK 900 RELATED ID: 3QW2 RELATED DB: PDB REMARK 900 MIPS FROM ARCHAEOGLOBUS FULGIDUS MUTANT N255A DBREF 3QVX A 1 392 UNP O28480 O28480_ARCFU 1 392 SEQADV 3QVX ALA A 367 UNP O28480 LYS 367 ENGINEERED MUTATION SEQRES 1 A 392 MET LYS VAL TRP LEU VAL GLY ALA TYR GLY ILE VAL SER SEQRES 2 A 392 THR THR ALA MET VAL GLY ALA ARG ALA ILE GLU ARG GLY SEQRES 3 A 392 ILE ALA PRO LYS ILE GLY LEU VAL SER GLU LEU PRO HIS SEQRES 4 A 392 PHE GLU GLY ILE GLU LYS TYR ALA PRO PHE SER PHE GLU SEQRES 5 A 392 PHE GLY GLY HIS GLU ILE ARG LEU LEU SER ASN ALA TYR SEQRES 6 A 392 GLU ALA ALA LYS GLU HIS TRP GLU LEU ASN ARG HIS PHE SEQRES 7 A 392 ASP ARG GLU ILE LEU GLU ALA VAL LYS SER ASP LEU GLU SEQRES 8 A 392 GLY ILE VAL ALA ARG LYS GLY THR ALA LEU ASN CYS GLY SEQRES 9 A 392 SER GLY ILE LYS GLU LEU GLY ASP ILE LYS THR LEU GLU SEQRES 10 A 392 GLY GLU GLY LEU SER LEU ALA GLU MET VAL SER ARG ILE SEQRES 11 A 392 GLU GLU ASP ILE LYS SER PHE ALA ASP ASP GLU THR VAL SEQRES 12 A 392 VAL ILE ASN VAL ALA SER THR GLU PRO LEU PRO ASN TYR SEQRES 13 A 392 SER GLU GLU TYR HIS GLY SER LEU GLU GLY PHE GLU ARG SEQRES 14 A 392 MET ILE ASP GLU ASP ARG LYS GLU TYR ALA SER ALA SER SEQRES 15 A 392 MET LEU TYR ALA TYR ALA ALA LEU LYS LEU GLY LEU PRO SEQRES 16 A 392 TYR ALA ASN PHE THR PRO SER PRO GLY SER ALA ILE PRO SEQRES 17 A 392 ALA LEU LYS GLU LEU ALA GLU LYS LYS GLY VAL PRO HIS SEQRES 18 A 392 ALA GLY ASN ASP GLY LYS THR GLY GLU THR LEU VAL LYS SEQRES 19 A 392 THR THR LEU ALA PRO MET PHE ALA TYR ARG ASN MET GLU SEQRES 20 A 392 VAL VAL GLY TRP MET SER TYR ASN ILE LEU GLY ASP TYR SEQRES 21 A 392 ASP GLY LYS VAL LEU SER ALA ARG ASP ASN LYS GLU SER SEQRES 22 A 392 LYS VAL LEU SER LYS ASP LYS VAL LEU GLU LYS MET LEU SEQRES 23 A 392 GLY TYR SER PRO TYR SER ILE THR GLU ILE GLN TYR PHE SEQRES 24 A 392 PRO SER LEU VAL ASP ASN LYS THR ALA PHE ASP PHE VAL SEQRES 25 A 392 HIS PHE LYS GLY PHE LEU GLY LYS LEU MET LYS PHE TYR SEQRES 26 A 392 PHE ILE TRP ASP ALA ILE ASP ALA ILE VAL ALA ALA PRO SEQRES 27 A 392 LEU ILE LEU ASP ILE ALA ARG PHE LEU LEU PHE ALA LYS SEQRES 28 A 392 LYS LYS GLY VAL LYS GLY VAL VAL LYS GLU MET ALA PHE SEQRES 29 A 392 PHE PHE ALA SER PRO MET ASP THR ASN VAL ILE ASN THR SEQRES 30 A 392 HIS GLU GLN PHE VAL VAL LEU LYS GLU TRP TYR SER ASN SEQRES 31 A 392 LEU LYS HET PO4 A 393 5 HET SO4 A 394 5 HET SO4 A 395 5 HET NAD A 396 44 HET GOL A 397 6 HET GOL A 398 6 HET GOL A 403 6 HET GOL A 404 6 HET PG4 A 399 13 HET NA A 410 1 HETNAM PO4 PHOSPHATE ION HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 NAD C21 H27 N7 O14 P2 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 10 PG4 C8 H18 O5 FORMUL 11 NA NA 1+ FORMUL 12 HOH *234(H2 O) HELIX 1 1 GLY A 10 ARG A 25 1 16 HELIX 2 2 LEU A 33 GLU A 41 5 9 HELIX 3 3 GLY A 42 TYR A 46 5 5 HELIX 4 4 ASN A 63 ARG A 76 1 14 HELIX 5 5 ASP A 79 VAL A 86 1 8 HELIX 6 6 VAL A 86 GLY A 92 1 7 HELIX 7 7 GLY A 104 GLY A 111 5 8 HELIX 8 8 LEU A 116 GLY A 120 5 5 HELIX 9 9 SER A 122 ALA A 138 1 17 HELIX 10 10 SER A 157 GLY A 162 1 6 HELIX 11 11 SER A 163 GLU A 173 1 11 HELIX 12 12 ARG A 175 ALA A 179 5 5 HELIX 13 13 SER A 180 LEU A 192 1 13 HELIX 14 14 ILE A 207 GLY A 218 1 12 HELIX 15 15 GLY A 229 ARG A 244 1 16 HELIX 16 16 GLY A 258 SER A 266 1 9 HELIX 17 17 ALA A 267 GLY A 287 1 21 HELIX 18 18 PRO A 300 VAL A 303 5 4 HELIX 19 19 PHE A 317 GLY A 319 5 3 HELIX 20 20 ILE A 331 LYS A 353 1 23 HELIX 21 21 LYS A 360 PHE A 366 5 7 HELIX 22 22 ASN A 376 LYS A 392 1 17 SHEET 1 A 7 ARG A 96 LYS A 97 0 SHEET 2 A 7 GLU A 52 GLU A 57 1 N GLY A 55 O ARG A 96 SHEET 3 A 7 LYS A 2 VAL A 6 1 N VAL A 3 O GLU A 52 SHEET 4 A 7 THR A 142 ASN A 146 1 O VAL A 143 N TRP A 4 SHEET 5 A 7 TYR A 196 ASN A 198 1 O ALA A 197 N ASN A 146 SHEET 6 A 7 PRO A 220 GLY A 223 1 O ALA A 222 N TYR A 196 SHEET 7 A 7 GLY A 357 VAL A 358 1 O GLY A 357 N HIS A 221 SHEET 1 B 4 TYR A 291 TYR A 298 0 SHEET 2 B 4 GLU A 247 LEU A 257 1 N SER A 253 O ILE A 293 SHEET 3 B 4 THR A 307 LYS A 315 -1 O LYS A 315 N GLU A 247 SHEET 4 B 4 LEU A 321 ASP A 329 -1 O PHE A 324 N VAL A 312 LINK OD2 ASP A 329 NA NA A 410 1555 1555 2.62 CISPEP 1 GLY A 223 ASN A 224 0 4.79 SITE 1 AC1 9 THR A 228 GLY A 229 GLU A 230 THR A 231 SITE 2 AC1 9 LYS A 274 LYS A 278 LYS A 306 GOL A 397 SITE 3 AC1 9 HOH A 445 SITE 1 AC2 3 ARG A 175 LYS A 176 GLU A 177 SITE 1 AC3 3 LYS A 360 THR A 372 ASN A 373 SITE 1 AC4 34 GLY A 7 TYR A 9 GLY A 10 ILE A 11 SITE 2 AC4 34 VAL A 12 GLU A 57 ARG A 59 THR A 99 SITE 3 AC4 34 ALA A 100 CYS A 103 LEU A 110 VAL A 147 SITE 4 AC4 34 ALA A 148 SER A 149 THR A 150 ALA A 181 SITE 5 AC4 34 TYR A 185 PHE A 199 THR A 200 ASP A 225 SITE 6 AC4 34 GLY A 226 THR A 228 TYR A 260 ASP A 261 SITE 7 AC4 34 LYS A 274 ASP A 332 ALA A 336 GOL A 397 SITE 8 AC4 34 HOH A 421 HOH A 423 HOH A 426 HOH A 437 SITE 9 AC4 34 HOH A 441 HOH A 501 SITE 1 AC5 7 ASP A 261 LYS A 274 LYS A 278 LYS A 306 SITE 2 AC5 7 ASP A 332 PO4 A 393 NAD A 396 SITE 1 AC6 4 LYS A 263 TYR A 298 PRO A 300 HOH A 574 SITE 1 AC7 7 ASN A 305 LEU A 321 LYS A 323 ASP A 329 SITE 2 AC7 7 HOH A 414 HOH A 432 HOH A 603 SITE 1 AC8 6 ASN A 75 LEU A 302 VAL A 303 ASN A 305 SITE 2 AC8 6 ILE A 331 HOH A 414 SITE 1 AC9 6 GLU A 131 GLU A 132 LYS A 135 SER A 289 SITE 2 AC9 6 PRO A 290 SER A 292 SITE 1 BC1 2 TYR A 325 ASP A 329 CRYST1 82.070 89.280 104.970 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009527 0.00000