HEADER LIGASE 02-MAR-11 3QY0 TITLE CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM HELICOBACTER TITLE 2 PYLORI COMPLEXED WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DETHIOBIOTIN SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DTB SYNTHETASE, DTBS, DETHIOBIOTIN SYNTHASE; COMPND 5 EC: 6.3.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: 26695; SOURCE 6 GENE: BIOD, HP0029, HP_0029; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD(DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS DTBS, DETHIOBIOTIN SYNTHETASE, STRUCTURAL GENOMICS, PSI-BIOLOGY, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.POREBSKI,M.M.KLIMECKA,M.CHRUSZCZ,K.MURZYN,A.JOACHIMIAK,W.MINOR, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 13-SEP-23 3QY0 1 REMARK REVDAT 4 13-APR-22 3QY0 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 27-MAR-13 3QY0 1 JRNL REVDAT 2 28-MAR-12 3QY0 1 JRNL VERSN REVDAT 1 30-MAR-11 3QY0 0 JRNL AUTH P.J.POREBSKI,M.KLIMECKA,M.CHRUSZCZ,R.A.NICHOLLS,K.MURZYN, JRNL AUTH 2 M.E.CUFF,X.XU,M.CYMBOROWSKI,G.N.MURSHUDOV,A.SAVCHENKO, JRNL AUTH 3 A.EDWARDS,W.MINOR JRNL TITL STRUCTURAL CHARACTERIZATION OF HELICOBACTER PYLORI JRNL TITL 2 DETHIOBIOTIN SYNTHETASE REVEALS DIFFERENCES BETWEEN FAMILY JRNL TITL 3 MEMBERS. JRNL REF FEBS J. V. 279 1093 2012 JRNL REFN ISSN 1742-464X JRNL PMID 22284390 JRNL DOI 10.1111/J.1742-4658.2012.08506.X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1911 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1303 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2572 ; 1.846 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3201 ; 2.270 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;34.003 ;25.122 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;11.142 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2059 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 352 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 1.122 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 464 ; 0.229 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1864 ; 1.889 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 761 ; 2.854 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 702 ; 4.524 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0170 -19.0110 -16.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0806 REMARK 3 T33: 0.0399 T12: -0.0108 REMARK 3 T13: -0.0069 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.2000 L22: 1.1150 REMARK 3 L33: 2.1378 L12: 0.0881 REMARK 3 L13: 0.0940 L23: 0.2322 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.0427 S13: -0.0197 REMARK 3 S21: 0.0128 S22: 0.0107 S23: 0.0123 REMARK 3 S31: 0.0863 S32: 0.0179 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5330 -23.1520 -9.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.0365 T22: 0.0633 REMARK 3 T33: 0.0326 T12: -0.0185 REMARK 3 T13: -0.0008 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.0246 L22: 0.4989 REMARK 3 L33: 0.8358 L12: -0.2316 REMARK 3 L13: 0.4708 L23: 0.1074 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.1335 S13: -0.1427 REMARK 3 S21: 0.0522 S22: -0.0030 S23: 0.0566 REMARK 3 S31: 0.1239 S32: -0.0768 S33: -0.0060 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5300 -13.4870 -12.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.0392 T22: 0.0808 REMARK 3 T33: 0.0488 T12: -0.0104 REMARK 3 T13: -0.0070 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.9391 L22: 0.4107 REMARK 3 L33: 1.6531 L12: 0.0506 REMARK 3 L13: 1.3587 L23: 0.1530 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.1635 S13: 0.0880 REMARK 3 S21: 0.0139 S22: 0.0093 S23: 0.0413 REMARK 3 S31: -0.0362 S32: -0.1450 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0120 -13.3080 -26.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0511 REMARK 3 T33: 0.0505 T12: -0.0078 REMARK 3 T13: -0.0205 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.7734 L22: 0.2832 REMARK 3 L33: 1.1251 L12: -0.1268 REMARK 3 L13: 0.0854 L23: -0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0201 S13: 0.0354 REMARK 3 S21: -0.0365 S22: -0.0205 S23: 0.0256 REMARK 3 S31: -0.0646 S32: -0.0016 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1470 -17.8120 -30.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0809 REMARK 3 T33: 0.0749 T12: -0.0032 REMARK 3 T13: -0.0105 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.8350 L22: 1.1627 REMARK 3 L33: 2.5836 L12: 0.0654 REMARK 3 L13: 0.5194 L23: 0.6496 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0093 S13: 0.0418 REMARK 3 S21: -0.0723 S22: 0.0233 S23: 0.0439 REMARK 3 S31: -0.0033 S32: 0.1269 S33: -0.0302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27374 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : 0.45400 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2QMO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350; 100 MM NH4NO3; 100 MM, REMARK 280 BIS-TRIS; SOAKED WITH 10 MM GDP, 10 MM MGCL2; IN SITU REMARK 280 PROTEOLYSIS - CHYMOTRYPSIN, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.85900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.67100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.85900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.67100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 13.73402 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -67.74690 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 296 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 101 CD OE1 NE2 REMARK 470 ASN A 179 CG OD1 ND2 REMARK 470 LYS A 210 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 199 O HOH A 444 4554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 119 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 58.92 -147.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GDP A 221 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 224 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 14 OG1 REMARK 620 2 ASP A 50 OD2 84.2 REMARK 620 3 GLU A 116 OE2 85.0 90.3 REMARK 620 4 GDP A 221 O3B 92.7 169.4 99.6 REMARK 620 5 PO4 A 222 O1 172.2 92.0 88.2 92.2 REMARK 620 6 HOH A 270 O 96.3 85.9 175.8 84.3 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 223 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 221 O1B REMARK 620 2 PO4 A 222 O3 118.2 REMARK 620 3 PO4 A 222 O1 75.7 56.1 REMARK 620 4 HOH A 270 O 80.9 110.9 69.5 REMARK 620 5 HOH A 420 O 91.2 148.8 150.0 82.0 REMARK 620 6 HOH A 429 O 163.3 74.8 106.9 84.6 78.5 REMARK 620 7 HOH A 430 O 99.6 91.0 135.0 155.1 73.1 90.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 240 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5858 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2QMO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM REMARK 900 HELICOBACTER PYLORI REMARK 900 RELATED ID: 3MLE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM REMARK 900 HELICOBACTER PYLORI COCRYSTALLIZED WITH ATP REMARK 900 RELATED ID: 3QXC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM REMARK 900 HELICOBACTER PYLORI COMPLEXED WITH ATP REMARK 900 RELATED ID: 3QXH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM REMARK 900 HELICOBACTER PYLORI COMPLEXED WITH ADP AND 8-AMINOCAPRYLIC ACID REMARK 900 RELATED ID: 3QXJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM REMARK 900 HELICOBACTER PYLORI COMPLEXED WITH GTP REMARK 900 RELATED ID: 3QXS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM REMARK 900 HELICOBACTER PYLORI COMPLEXED WITH ANP REMARK 900 RELATED ID: 3QXX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM REMARK 900 HELICOBACTER PYLORI COMPLEXED WITH GDP AND 8-AMINOCAPRYLIC ACID DBREF 3QY0 A 1 218 UNP O24872 BIOD_HELPY 1 218 SEQADV 3QY0 MET A -21 UNP O24872 EXPRESSION TAG SEQADV 3QY0 GLY A -20 UNP O24872 EXPRESSION TAG SEQADV 3QY0 SER A -19 UNP O24872 EXPRESSION TAG SEQADV 3QY0 SER A -18 UNP O24872 EXPRESSION TAG SEQADV 3QY0 HIS A -17 UNP O24872 EXPRESSION TAG SEQADV 3QY0 HIS A -16 UNP O24872 EXPRESSION TAG SEQADV 3QY0 HIS A -15 UNP O24872 EXPRESSION TAG SEQADV 3QY0 HIS A -14 UNP O24872 EXPRESSION TAG SEQADV 3QY0 HIS A -13 UNP O24872 EXPRESSION TAG SEQADV 3QY0 HIS A -12 UNP O24872 EXPRESSION TAG SEQADV 3QY0 SER A -11 UNP O24872 EXPRESSION TAG SEQADV 3QY0 SER A -10 UNP O24872 EXPRESSION TAG SEQADV 3QY0 GLY A -9 UNP O24872 EXPRESSION TAG SEQADV 3QY0 ARG A -8 UNP O24872 EXPRESSION TAG SEQADV 3QY0 GLU A -7 UNP O24872 EXPRESSION TAG SEQADV 3QY0 ASN A -6 UNP O24872 EXPRESSION TAG SEQADV 3QY0 LEU A -5 UNP O24872 EXPRESSION TAG SEQADV 3QY0 TYR A -4 UNP O24872 EXPRESSION TAG SEQADV 3QY0 PHE A -3 UNP O24872 EXPRESSION TAG SEQADV 3QY0 GLN A -2 UNP O24872 EXPRESSION TAG SEQADV 3QY0 GLY A -1 UNP O24872 EXPRESSION TAG SEQADV 3QY0 HIS A 0 UNP O24872 EXPRESSION TAG SEQADV 3QY0 GLY A 219 UNP O24872 EXPRESSION TAG SEQADV 3QY0 SER A 220 UNP O24872 EXPRESSION TAG SEQRES 1 A 242 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 242 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET LEU PHE ILE SEQRES 3 A 242 SER ALA THR ASN THR ASN ALA GLY LYS THR THR CYS ALA SEQRES 4 A 242 ARG LEU LEU ALA GLN TYR CYS ASN ALA CYS GLY VAL LYS SEQRES 5 A 242 THR ILE LEU LEU LYS PRO ILE GLU THR GLY VAL ASN ASP SEQRES 6 A 242 ALA ILE ASN HIS SER SER ASP ALA HIS LEU PHE LEU GLN SEQRES 7 A 242 ASP ASN ARG LEU LEU ASP ARG SER LEU THR LEU LYS ASP SEQRES 8 A 242 ILE SER PHE TYR ARG TYR HIS LYS VAL SER ALA PRO LEU SEQRES 9 A 242 ILE ALA GLN GLN GLU GLU ASP PRO ASN ALA PRO ILE ASP SEQRES 10 A 242 THR ASP ASN LEU THR GLN ARG LEU HIS ASN PHE THR LYS SEQRES 11 A 242 THR TYR ASP LEU VAL ILE VAL GLU GLY ALA GLY GLY LEU SEQRES 12 A 242 CYS VAL PRO ILE THR LEU GLU GLU ASN MET LEU ASP PHE SEQRES 13 A 242 ALA LEU LYS LEU LYS ALA LYS MET LEU LEU ILE SER HIS SEQRES 14 A 242 ASP ASN LEU GLY LEU ILE ASN ASP CYS LEU LEU ASN ASP SEQRES 15 A 242 PHE LEU LEU LYS SER HIS GLN LEU ASP TYR LYS ILE ALA SEQRES 16 A 242 ILE ASN LEU LYS GLY ASN ASN THR ALA PHE HIS SER ILE SEQRES 17 A 242 SER LEU PRO TYR ILE GLU LEU PHE ASN THR ARG SER ASN SEQRES 18 A 242 ASN PRO ILE VAL ILE PHE GLN GLN SER LEU LYS VAL LEU SEQRES 19 A 242 MET SER PHE ALA LEU LYS GLY SER HET GDP A 221 17 HET PO4 A 222 5 HET MG A 223 1 HET MG A 224 1 HET EDO A 225 4 HET EDO A 226 4 HET EDO A 227 4 HET EDO A 228 4 HET EDO A 229 4 HET EDO A 230 4 HET EDO A 231 4 HET EDO A 232 4 HET EDO A 233 4 HET EDO A 234 4 HET EDO A 235 4 HET EDO A 236 4 HET EDO A 237 4 HET EDO A 238 4 HET EDO A 239 4 HET EDO A 240 4 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 PO4 O4 P 3- FORMUL 4 MG 2(MG 2+) FORMUL 6 EDO 16(C2 H6 O2) FORMUL 22 HOH *209(H2 O) HELIX 1 1 GLY A 12 CYS A 27 1 16 HELIX 2 2 SER A 49 ARG A 59 1 11 HELIX 3 3 THR A 66 SER A 71 1 6 HELIX 4 4 ALA A 80 ASP A 89 1 10 HELIX 5 5 ASP A 95 PHE A 106 1 12 HELIX 6 6 ASN A 130 LYS A 139 1 10 HELIX 7 7 GLY A 151 SER A 165 1 15 HELIX 8 8 THR A 181 SER A 187 1 7 HELIX 9 9 SER A 187 SER A 198 1 12 HELIX 10 10 SER A 208 LYS A 218 1 11 SHEET 1 A 6 THR A 31 LEU A 34 0 SHEET 2 A 6 LEU A 112 GLU A 116 1 O ILE A 114 N LEU A 34 SHEET 3 A 6 HIS A 0 ALA A 6 1 N ILE A 4 O VAL A 115 SHEET 4 A 6 LYS A 141 SER A 146 1 O LYS A 141 N PHE A 3 SHEET 5 A 6 TYR A 170 ILE A 174 1 O LYS A 171 N LEU A 144 SHEET 6 A 6 VAL A 203 ILE A 204 1 O VAL A 203 N ILE A 174 SHEET 1 B 2 ILE A 37 GLU A 38 0 SHEET 2 B 2 TYR A 73 ARG A 74 1 O TYR A 73 N GLU A 38 LINK OG1 THR A 14 MG MG A 224 1555 1555 2.11 LINK OD2 ASP A 50 MG MG A 224 1555 1555 2.09 LINK OE2 GLU A 116 MG MG A 224 1555 1555 2.06 LINK O1B GDP A 221 MG MG A 223 1555 1555 1.99 LINK O3B GDP A 221 MG MG A 224 1555 1555 1.98 LINK O3 PO4 A 222 MG MG A 223 1555 1555 2.07 LINK O1 PO4 A 222 MG MG A 223 1555 1555 2.69 LINK O1 PO4 A 222 MG MG A 224 1555 1555 2.04 LINK MG MG A 223 O HOH A 270 1555 1555 2.49 LINK MG MG A 223 O HOH A 420 1555 1555 2.07 LINK MG MG A 223 O HOH A 429 1555 1555 2.18 LINK MG MG A 223 O HOH A 430 1555 1555 2.11 LINK MG MG A 224 O HOH A 270 1555 1555 2.13 SITE 1 AC1 15 ASN A 10 ALA A 11 GLY A 12 LYS A 13 SITE 2 AC1 15 THR A 14 THR A 15 GLU A 116 GLN A 167 SITE 3 AC1 15 PO4 A 222 MG A 223 MG A 224 HOH A 270 SITE 4 AC1 15 HOH A 326 HOH A 338 HOH A 420 SITE 1 AC2 13 THR A 9 LYS A 13 LYS A 35 ASP A 50 SITE 2 AC2 13 GLU A 116 GLY A 119 GDP A 221 MG A 223 SITE 3 AC2 13 MG A 224 HOH A 270 HOH A 413 HOH A 429 SITE 4 AC2 13 HOH A 430 SITE 1 AC3 8 THR A 9 GDP A 221 PO4 A 222 MG A 224 SITE 2 AC3 8 HOH A 270 HOH A 420 HOH A 429 HOH A 430 SITE 1 AC4 7 THR A 14 ASP A 50 GLU A 116 GDP A 221 SITE 2 AC4 7 PO4 A 222 MG A 223 HOH A 270 SITE 1 AC5 5 ASN A 130 LEU A 132 ASP A 133 EDO A 239 SITE 2 AC5 5 HOH A 315 SITE 1 AC6 6 PHE A 72 TYR A 73 ARG A 74 TYR A 75 SITE 2 AC6 6 ASP A 89 HOH A 436 SITE 1 AC7 6 LYS A 171 HIS A 184 ASN A 200 PRO A 201 SITE 2 AC7 6 HOH A 262 HOH A 383 SITE 1 AC8 5 THR A 39 SER A 79 PRO A 81 GLY A 119 SITE 2 AC8 5 VAL A 123 SITE 1 AC9 6 LYS A 139 ALA A 140 LYS A 141 LEU A 168 SITE 2 AC9 6 ASP A 169 HOH A 390 SITE 1 BC1 6 GLY A 178 THR A 181 ASN A 195 ASN A 199 SITE 2 BC1 6 GLN A 207 HOH A 244 SITE 1 BC2 4 ASN A 42 ASP A 43 ARG A 74 HIS A 76 SITE 1 BC3 8 THR A 7 ASN A 8 THR A 9 GLY A 119 SITE 2 BC3 8 GLY A 151 ASN A 154 ASP A 155 HOH A 290 SITE 1 BC4 4 ASN A 25 GLY A 28 LEU A 61 HOH A 428 SITE 1 BC5 2 GLN A 22 ASP A 57 SITE 1 BC6 4 TYR A 73 ALA A 92 PRO A 93 HOH A 398 SITE 1 BC7 5 HIS A 0 MET A 1 LYS A 139 LYS A 141 SITE 2 BC7 5 SER A 220 SITE 1 BC8 6 CYS A 122 ASN A 130 LEU A 157 TYR A 190 SITE 2 BC8 6 HOH A 315 HOH A 356 SITE 1 BC9 6 PHE A -3 HIS A 0 GLU A 87 GLU A 88 SITE 2 BC9 6 LEU A 217 GLY A 219 SITE 1 CC1 5 LEU A 157 ASP A 160 PHE A 161 LYS A 164 SITE 2 CC1 5 EDO A 225 SITE 1 CC2 5 SER A 64 ASP A 89 PRO A 90 ASN A 91 SITE 2 CC2 5 HOH A 340 CRYST1 81.718 37.342 69.125 90.00 101.46 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012237 0.000000 0.002481 0.00000 SCALE2 0.000000 0.026779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014761 0.00000