HEADER OXIDOREDUCTASE 04-MAR-11 3QZ3 TITLE THE CRYSTAL STRUCTURE OF FERRITIN FROM VIBRIO CHOLERAE O1 BIOVAR EL TITLE 2 TOR STR. N16961 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRITIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_0078; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19C KEYWDS STRUCTURAL GENOMICS, THE CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ALL ALPHA FERRITIN-LIKE, CYTOPLASMIC, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,R.MULLIGAN,J.HASSEMAN,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 06-DEC-23 3QZ3 1 REMARK REVDAT 3 13-SEP-23 3QZ3 1 REMARK SEQADV LINK REVDAT 2 06-APR-11 3QZ3 1 AUTHOR JRNL REVDAT 1 23-MAR-11 3QZ3 0 JRNL AUTH K.TAN,R.MULLIGAN,J.HASSEMAN,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF FERRITIN FROM VIBRIO CHOLERAE O1 JRNL TITL 2 BIOVAR EL TOR STR. N16961 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 40957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0358 - 4.5207 0.99 4277 202 0.1611 0.1866 REMARK 3 2 4.5207 - 3.5889 1.00 4079 233 0.1563 0.1809 REMARK 3 3 3.5889 - 3.1354 1.00 4050 221 0.1884 0.2498 REMARK 3 4 3.1354 - 2.8488 0.99 3972 225 0.2076 0.2504 REMARK 3 5 2.8488 - 2.6447 0.98 3981 204 0.2007 0.2510 REMARK 3 6 2.6447 - 2.4888 0.96 3840 207 0.2149 0.2628 REMARK 3 7 2.4888 - 2.3642 0.95 3816 208 0.1948 0.2302 REMARK 3 8 2.3642 - 2.2613 0.94 3766 217 0.1808 0.2274 REMARK 3 9 2.2613 - 2.1742 0.91 3638 189 0.1972 0.2568 REMARK 3 10 2.1742 - 2.0992 0.87 3470 162 0.2250 0.3131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 47.99 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.40800 REMARK 3 B22 (A**2) : -7.40800 REMARK 3 B33 (A**2) : 14.81590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4094 REMARK 3 ANGLE : 0.951 5510 REMARK 3 CHIRALITY : 0.070 585 REMARK 3 PLANARITY : 0.004 717 REMARK 3 DIHEDRAL : 16.630 1475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -26.6685 -12.7372 -40.3094 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.3179 REMARK 3 T33: 0.3824 T12: -0.0223 REMARK 3 T13: -0.0160 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.3307 L22: 0.7012 REMARK 3 L33: 0.2874 L12: 0.4800 REMARK 3 L13: -0.6606 L23: -0.3627 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: 0.0703 S13: 0.2929 REMARK 3 S21: 0.0678 S22: -0.0411 S23: 0.0570 REMARK 3 S31: -0.0991 S32: -0.0403 S33: -0.0356 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -48.3679 -8.6527 -9.7293 REMARK 3 T TENSOR REMARK 3 T11: 0.4476 T22: 0.3424 REMARK 3 T33: 0.3825 T12: -0.0172 REMARK 3 T13: -0.0439 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.2059 L22: 0.9643 REMARK 3 L33: 0.7530 L12: -0.4761 REMARK 3 L13: 0.0660 L23: -0.5293 REMARK 3 S TENSOR REMARK 3 S11: 0.0973 S12: 0.0387 S13: -0.0715 REMARK 3 S21: -0.1215 S22: -0.0459 S23: 0.1702 REMARK 3 S31: 0.1408 S32: 0.0626 S33: -0.0590 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -21.4559 -35.2439 -27.6801 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.3760 REMARK 3 T33: 0.3297 T12: 0.0039 REMARK 3 T13: -0.0109 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.6454 L22: 0.4910 REMARK 3 L33: 0.8230 L12: -0.1404 REMARK 3 L13: -0.7526 L23: -0.0395 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.2287 S13: -0.0463 REMARK 3 S21: 0.1232 S22: 0.0094 S23: -0.1391 REMARK 3 S31: 0.0486 S32: 0.3105 S33: 0.0192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL, 0.1M BIS-TRIS, 1.5M REMARK 280 AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 72.48000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.46050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 72.48000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 68.46050 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 72.48000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.46050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 72.48000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.46050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.48000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.46050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.48000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.46050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 72.48000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.46050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 72.48000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.46050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 73360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 143940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -361.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 PHE A 5 REMARK 465 GLY A 171 REMARK 465 SER A 172 REMARK 465 SER A 173 REMARK 465 SER A 174 REMARK 465 VAL A 175 REMARK 465 MSE A 176 REMARK 465 ASP A 177 REMARK 465 ALA A 178 REMARK 465 PRO A 179 REMARK 465 ALA A 180 REMARK 465 GLU A 181 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ASN B 2 REMARK 465 GLN B 3 REMARK 465 GLU B 4 REMARK 465 PHE B 5 REMARK 465 PHE B 6 REMARK 465 LYS B 170 REMARK 465 GLY B 171 REMARK 465 SER B 172 REMARK 465 SER B 173 REMARK 465 SER B 174 REMARK 465 VAL B 175 REMARK 465 MSE B 176 REMARK 465 ASP B 177 REMARK 465 ALA B 178 REMARK 465 PRO B 179 REMARK 465 ALA B 180 REMARK 465 GLU B 181 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 ASN C 2 REMARK 465 GLN C 3 REMARK 465 GLU C 4 REMARK 465 PHE C 5 REMARK 465 PHE C 6 REMARK 465 GLY C 171 REMARK 465 SER C 172 REMARK 465 SER C 173 REMARK 465 SER C 174 REMARK 465 VAL C 175 REMARK 465 MSE C 176 REMARK 465 ASP C 177 REMARK 465 ALA C 178 REMARK 465 PRO C 179 REMARK 465 ALA C 180 REMARK 465 GLU C 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA B 156 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 42 77.05 -100.75 REMARK 500 PHE B 42 78.11 -100.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 183 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP01358 RELATED DB: TARGETDB DBREF 3QZ3 A 1 181 UNP Q9KVR1 Q9KVR1_VIBCH 1 181 DBREF 3QZ3 B 1 181 UNP Q9KVR1 Q9KVR1_VIBCH 1 181 DBREF 3QZ3 C 1 181 UNP Q9KVR1 Q9KVR1_VIBCH 1 181 SEQADV 3QZ3 SER A -2 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 ASN A -1 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 ALA A 0 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 SER B -2 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 ASN B -1 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 ALA B 0 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 SER C -2 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 ASN C -1 UNP Q9KVR1 EXPRESSION TAG SEQADV 3QZ3 ALA C 0 UNP Q9KVR1 EXPRESSION TAG SEQRES 1 A 184 SER ASN ALA MSE ASN GLN GLU PHE PHE MSE LEU SER GLN SEQRES 2 A 184 ALA MSE VAL GLU HIS LEU ASN GLU GLN ILE ASN LEU GLU SEQRES 3 A 184 PHE PHE SER SER ASN LEU TYR LEU GLN MSE SER ALA TRP SEQRES 4 A 184 CYS GLU ASP LYS GLY PHE ASP GLY ALA ALA GLU PHE LEU SEQRES 5 A 184 ARG ALA HIS ALA VAL GLU GLU MSE GLN HIS MSE GLN ARG SEQRES 6 A 184 LEU PHE THR TYR VAL SER GLU THR GLY ALA LEU PRO ILE SEQRES 7 A 184 LEU GLY ALA ILE ALA ALA PRO ARG HIS ASP PHE ALA SER SEQRES 8 A 184 LEU GLY GLU VAL PHE ARG GLU THR TYR GLN HIS GLU GLN SEQRES 9 A 184 LYS ILE THR GLN GLN ILE ASN LYS LEU ALA HIS VAL ALA SEQRES 10 A 184 PHE THR SER GLN ASP TYR SER THR PHE ASN PHE LEU GLN SEQRES 11 A 184 TRP TYR VAL ALA GLU GLN HIS GLU GLU GLU LYS LEU PHE SEQRES 12 A 184 LYS GLY ILE LEU ASP LYS LEU GLU LEU VAL GLY GLU ASP SEQRES 13 A 184 GLY LYS ALA LEU PHE PHE ILE ASP LYS ASP LEU ALA ALA SEQRES 14 A 184 LEU ALA LYS LYS GLY SER SER SER VAL MSE ASP ALA PRO SEQRES 15 A 184 ALA GLU SEQRES 1 B 184 SER ASN ALA MSE ASN GLN GLU PHE PHE MSE LEU SER GLN SEQRES 2 B 184 ALA MSE VAL GLU HIS LEU ASN GLU GLN ILE ASN LEU GLU SEQRES 3 B 184 PHE PHE SER SER ASN LEU TYR LEU GLN MSE SER ALA TRP SEQRES 4 B 184 CYS GLU ASP LYS GLY PHE ASP GLY ALA ALA GLU PHE LEU SEQRES 5 B 184 ARG ALA HIS ALA VAL GLU GLU MSE GLN HIS MSE GLN ARG SEQRES 6 B 184 LEU PHE THR TYR VAL SER GLU THR GLY ALA LEU PRO ILE SEQRES 7 B 184 LEU GLY ALA ILE ALA ALA PRO ARG HIS ASP PHE ALA SER SEQRES 8 B 184 LEU GLY GLU VAL PHE ARG GLU THR TYR GLN HIS GLU GLN SEQRES 9 B 184 LYS ILE THR GLN GLN ILE ASN LYS LEU ALA HIS VAL ALA SEQRES 10 B 184 PHE THR SER GLN ASP TYR SER THR PHE ASN PHE LEU GLN SEQRES 11 B 184 TRP TYR VAL ALA GLU GLN HIS GLU GLU GLU LYS LEU PHE SEQRES 12 B 184 LYS GLY ILE LEU ASP LYS LEU GLU LEU VAL GLY GLU ASP SEQRES 13 B 184 GLY LYS ALA LEU PHE PHE ILE ASP LYS ASP LEU ALA ALA SEQRES 14 B 184 LEU ALA LYS LYS GLY SER SER SER VAL MSE ASP ALA PRO SEQRES 15 B 184 ALA GLU SEQRES 1 C 184 SER ASN ALA MSE ASN GLN GLU PHE PHE MSE LEU SER GLN SEQRES 2 C 184 ALA MSE VAL GLU HIS LEU ASN GLU GLN ILE ASN LEU GLU SEQRES 3 C 184 PHE PHE SER SER ASN LEU TYR LEU GLN MSE SER ALA TRP SEQRES 4 C 184 CYS GLU ASP LYS GLY PHE ASP GLY ALA ALA GLU PHE LEU SEQRES 5 C 184 ARG ALA HIS ALA VAL GLU GLU MSE GLN HIS MSE GLN ARG SEQRES 6 C 184 LEU PHE THR TYR VAL SER GLU THR GLY ALA LEU PRO ILE SEQRES 7 C 184 LEU GLY ALA ILE ALA ALA PRO ARG HIS ASP PHE ALA SER SEQRES 8 C 184 LEU GLY GLU VAL PHE ARG GLU THR TYR GLN HIS GLU GLN SEQRES 9 C 184 LYS ILE THR GLN GLN ILE ASN LYS LEU ALA HIS VAL ALA SEQRES 10 C 184 PHE THR SER GLN ASP TYR SER THR PHE ASN PHE LEU GLN SEQRES 11 C 184 TRP TYR VAL ALA GLU GLN HIS GLU GLU GLU LYS LEU PHE SEQRES 12 C 184 LYS GLY ILE LEU ASP LYS LEU GLU LEU VAL GLY GLU ASP SEQRES 13 C 184 GLY LYS ALA LEU PHE PHE ILE ASP LYS ASP LEU ALA ALA SEQRES 14 C 184 LEU ALA LYS LYS GLY SER SER SER VAL MSE ASP ALA PRO SEQRES 15 C 184 ALA GLU MODRES 3QZ3 MSE A 7 MET SELENOMETHIONINE MODRES 3QZ3 MSE A 12 MET SELENOMETHIONINE MODRES 3QZ3 MSE A 33 MET SELENOMETHIONINE MODRES 3QZ3 MSE A 57 MET SELENOMETHIONINE MODRES 3QZ3 MSE A 60 MET SELENOMETHIONINE MODRES 3QZ3 MSE B 7 MET SELENOMETHIONINE MODRES 3QZ3 MSE B 12 MET SELENOMETHIONINE MODRES 3QZ3 MSE B 33 MET SELENOMETHIONINE MODRES 3QZ3 MSE B 57 MET SELENOMETHIONINE MODRES 3QZ3 MSE B 60 MET SELENOMETHIONINE MODRES 3QZ3 MSE C 7 MET SELENOMETHIONINE MODRES 3QZ3 MSE C 12 MET SELENOMETHIONINE MODRES 3QZ3 MSE C 33 MET SELENOMETHIONINE MODRES 3QZ3 MSE C 57 MET SELENOMETHIONINE MODRES 3QZ3 MSE C 60 MET SELENOMETHIONINE HET MSE A 7 8 HET MSE A 12 8 HET MSE A 33 8 HET MSE A 57 8 HET MSE A 60 8 HET MSE B 7 8 HET MSE B 12 8 HET MSE B 33 8 HET MSE B 57 8 HET MSE B 60 8 HET MSE C 7 8 HET MSE C 12 8 HET MSE C 33 8 HET MSE C 57 8 HET MSE C 60 8 HET EDO A 182 4 HET EDO B 182 4 HET EDO C 182 4 HET EDO C 183 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *148(H2 O) HELIX 1 1 SER A 9 LYS A 40 1 32 HELIX 2 2 PHE A 42 THR A 70 1 29 HELIX 3 3 SER A 88 SER A 117 1 30 HELIX 4 4 ASP A 119 GLY A 151 1 33 HELIX 5 5 ASP A 153 LYS A 170 1 18 HELIX 6 6 SER B 9 LYS B 40 1 32 HELIX 7 7 PHE B 42 THR B 70 1 29 HELIX 8 8 SER B 88 SER B 117 1 30 HELIX 9 9 ASP B 119 GLY B 151 1 33 HELIX 10 10 ASP B 153 LYS B 169 1 17 HELIX 11 11 SER C 9 LYS C 40 1 32 HELIX 12 12 PHE C 42 THR C 70 1 29 HELIX 13 13 SER C 88 SER C 117 1 30 HELIX 14 14 ASP C 119 GLY C 151 1 33 HELIX 15 15 ASP C 153 LYS C 169 1 17 LINK C PHE A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N LEU A 8 1555 1555 1.33 LINK C ALA A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N VAL A 13 1555 1555 1.33 LINK C GLN A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N SER A 34 1555 1555 1.33 LINK C GLU A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N GLN A 58 1555 1555 1.33 LINK C HIS A 59 N MSE A 60 1555 1555 1.32 LINK C MSE A 60 N GLN A 61 1555 1555 1.32 LINK C MSE B 7 N LEU B 8 1555 1555 1.33 LINK C ALA B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N VAL B 13 1555 1555 1.33 LINK C GLN B 32 N MSE B 33 1555 1555 1.33 LINK C MSE B 33 N SER B 34 1555 1555 1.33 LINK C GLU B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N GLN B 58 1555 1555 1.33 LINK C HIS B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N GLN B 61 1555 1555 1.33 LINK C MSE C 7 N LEU C 8 1555 1555 1.34 LINK C ALA C 11 N MSE C 12 1555 1555 1.33 LINK C MSE C 12 N VAL C 13 1555 1555 1.32 LINK C GLN C 32 N MSE C 33 1555 1555 1.33 LINK C MSE C 33 N SER C 34 1555 1555 1.34 LINK C GLU C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N GLN C 58 1555 1555 1.33 LINK C HIS C 59 N MSE C 60 1555 1555 1.33 LINK C MSE C 60 N GLN C 61 1555 1555 1.33 SITE 1 AC1 3 SER C 9 GLN C 10 ALA C 11 SITE 1 AC2 4 HIS A 52 GLU A 55 LEU A 167 ALA A 168 SITE 1 AC3 2 ALA B 51 GLU B 55 SITE 1 AC4 1 ARG C 83 CRYST1 144.960 144.960 136.921 90.00 90.00 90.00 I 4 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007303 0.00000