HEADER LYASE 04-MAR-11 3QZ6 TITLE THE CRYSTAL STRUCTURE OF HPCH/HPAI ALDOLASE FROM DESULFITOBACTERIUM TITLE 2 HAFNIENSE DCB-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HPCH/HPAI ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2; SOURCE 5 GENE: DHAF_2073; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, CYTOPLASMIC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,G.CHHOR,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 1 16-MAR-11 3QZ6 0 JRNL AUTH K.TAN,G.CHHOR,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF HPCH/HPAI ALDOLASE FROM JRNL TITL 2 DESULFITOBACTERIUM HAFNIENSE DCB-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 37911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8388 - 4.3065 1.00 3935 196 0.1379 0.1569 REMARK 3 2 4.3065 - 3.4186 1.00 3795 205 0.1334 0.1379 REMARK 3 3 3.4186 - 2.9866 1.00 3743 224 0.1525 0.1782 REMARK 3 4 2.9866 - 2.7136 0.98 3668 234 0.1558 0.1801 REMARK 3 5 2.7136 - 2.5191 0.97 3673 197 0.1557 0.1662 REMARK 3 6 2.5191 - 2.3706 0.96 3618 180 0.1488 0.1720 REMARK 3 7 2.3706 - 2.2519 0.95 3557 178 0.1547 0.1913 REMARK 3 8 2.2519 - 2.1538 0.93 3465 164 0.1714 0.2083 REMARK 3 9 2.1538 - 2.0709 0.89 3359 177 0.2054 0.2475 REMARK 3 10 2.0709 - 1.9995 0.86 3192 151 0.2297 0.2484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 38.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92990 REMARK 3 B22 (A**2) : 1.92990 REMARK 3 B33 (A**2) : -3.85980 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2051 REMARK 3 ANGLE : 0.982 2781 REMARK 3 CHIRALITY : 0.065 312 REMARK 3 PLANARITY : 0.004 360 REMARK 3 DIHEDRAL : 13.349 748 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 16.2071 11.5870 17.1328 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.1694 REMARK 3 T33: 0.1404 T12: -0.0394 REMARK 3 T13: -0.0372 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.4137 L22: 0.3022 REMARK 3 L33: 0.4876 L12: 0.0618 REMARK 3 L13: -0.0983 L23: 0.1770 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.1274 S13: 0.0362 REMARK 3 S21: 0.0273 S22: 0.0065 S23: -0.0730 REMARK 3 S31: -0.0698 S32: 0.1775 S33: -0.0136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QZ6 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-11. REMARK 100 THE RCSB ID CODE IS RCSB064287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.77300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.77300 REMARK 200 R SYM FOR SHELL (I) : 0.01600 REMARK 200 FOR SHELL : 0.773 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/ARP/WARP/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE, 0.1M TRIS.HCL, REMARK 280 15% (V/V) PEG400, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.76550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.96973 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 58.78533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.76550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.96973 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 58.78533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.76550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.96973 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.78533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.76550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.96973 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.78533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.76550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.96973 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.78533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.76550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.96973 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 58.78533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.93946 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 117.57067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.93946 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 117.57067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.93946 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 117.57067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.93946 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 117.57067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.93946 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 117.57067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.93946 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 117.57067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -518.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 259 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 120 -114.52 59.53 REMARK 500 ALA A 214 -62.97 -129.16 REMARK 500 SER A 233 -144.27 55.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 499 DISTANCE = 5.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 259 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100092 RELATED DB: TARGETDB DBREF 3QZ6 A 1 258 UNP B8FRX2 B8FRX2_DESHD 1 258 SEQADV 3QZ6 SER A -2 UNP B8FRX2 EXPRESSION TAG SEQADV 3QZ6 ASN A -1 UNP B8FRX2 EXPRESSION TAG SEQADV 3QZ6 ALA A 0 UNP B8FRX2 EXPRESSION TAG SEQRES 1 A 261 SER ASN ALA MSE PHE LEU LYS LYS LYS LEU SER ALA GLY SEQRES 2 A 261 LYS SER VAL VAL GLY THR MSE LEU ASN LEU VAL TYR ASN SEQRES 3 A 261 PRO ASP ILE VAL ARG ILE TYR ALA GLU ALA GLY LEU ASP SEQRES 4 A 261 TYR PHE ILE VAL ASP CYS GLU HIS ALA ALA TYR THR PHE SEQRES 5 A 261 ARG GLU ILE ASN HIS LEU VAL SER VAL ALA LYS ASN ALA SEQRES 6 A 261 GLY VAL SER VAL LEU VAL ARG ILE PRO GLN VAL ASP ARG SEQRES 7 A 261 ALA HIS VAL GLN ARG LEU LEU ASP ILE GLY ALA GLU GLY SEQRES 8 A 261 PHE MSE ILE PRO GLY VAL GLN SER ALA GLU THR MSE ARG SEQRES 9 A 261 GLU THR VAL ARG LEU ALA LYS TYR PRO PRO LEU GLY GLU SEQRES 10 A 261 ARG GLY VAL GLY GLY SER ILE VAL THR ASP PHE LYS PRO SEQRES 11 A 261 VAL ASN TRP ALA GLU TRP VAL GLN GLU ARG ASN ASP GLU SEQRES 12 A 261 ILE PHE ILE MSE ALA GLN ILE GLU HIS VAL LYS ALA VAL SEQRES 13 A 261 GLU ASP ILE ASP SER ILE LEU ALA VAL GLN GLY VAL ASP SEQRES 14 A 261 ALA VAL ILE PHE GLY PRO ARG ASP LEU SER ASN ASP LEU SEQRES 15 A 261 GLY ILE ILE GLY GLN THR GLU HIS PRO LYS VAL TYR GLU SEQRES 16 A 261 CYS TYR GLU LYS VAL TYR ARG ALA ALA ASP ARG GLN GLY SEQRES 17 A 261 VAL VAL LYS GLY PHE PHE THR ALA ALA ASP ALA ALA LYS SEQRES 18 A 261 MSE GLY TRP ALA VAL GLU ARG GLY ALA GLN MSE LEU LEU SEQRES 19 A 261 TRP SER GLY ASP VAL ALA ALA LEU GLN THR TYR THR ALA SEQRES 20 A 261 LYS GLY VAL LYS THR ILE LYS GLU LEU PRO GLY PHE ASN SEQRES 21 A 261 PRO MODRES 3QZ6 MSE A 1 MET SELENOMETHIONINE MODRES 3QZ6 MSE A 17 MET SELENOMETHIONINE MODRES 3QZ6 MSE A 90 MET SELENOMETHIONINE MODRES 3QZ6 MSE A 100 MET SELENOMETHIONINE MODRES 3QZ6 MSE A 144 MET SELENOMETHIONINE MODRES 3QZ6 MSE A 219 MET SELENOMETHIONINE MODRES 3QZ6 MSE A 229 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 17 8 HET MSE A 90 8 HET MSE A 100 8 HET MSE A 144 8 HET MSE A 219 8 HET MSE A 229 8 HET ZN A 259 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *242(H2 O) HELIX 1 1 PHE A 2 ALA A 9 1 8 HELIX 2 2 ASP A 25 ALA A 33 1 9 HELIX 3 3 THR A 48 GLY A 63 1 16 HELIX 4 4 ASP A 74 GLY A 85 1 12 HELIX 5 5 SER A 96 LYS A 108 1 13 HELIX 6 6 GLY A 119 ASP A 124 5 6 HELIX 7 7 ASN A 129 ASP A 139 1 11 HELIX 8 8 HIS A 149 ASP A 155 1 7 HELIX 9 9 ASP A 155 ALA A 161 1 7 HELIX 10 10 GLY A 171 LEU A 179 1 9 HELIX 11 11 HIS A 187 GLY A 205 1 19 HELIX 12 12 ASP A 215 LYS A 218 5 4 HELIX 13 13 MSE A 219 ARG A 225 1 7 HELIX 14 14 ASP A 235 GLU A 252 1 18 SHEET 1 A 9 VAL A 13 LEU A 18 0 SHEET 2 A 9 TYR A 37 ASP A 41 1 O ILE A 39 N LEU A 18 SHEET 3 A 9 SER A 65 ARG A 69 1 O ARG A 69 N VAL A 40 SHEET 4 A 9 GLY A 88 ILE A 91 1 O GLY A 88 N VAL A 68 SHEET 5 A 9 PHE A 142 ILE A 147 1 O MSE A 144 N ILE A 91 SHEET 6 A 9 ALA A 167 PHE A 170 1 O ILE A 169 N ILE A 147 SHEET 7 A 9 VAL A 207 THR A 212 1 O VAL A 207 N VAL A 168 SHEET 8 A 9 MSE A 229 GLY A 234 1 O SER A 233 N THR A 212 SHEET 9 A 9 VAL A 13 LEU A 18 1 N GLY A 15 O TRP A 232 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N PHE A 2 1555 1555 1.33 LINK C THR A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N LEU A 18 1555 1555 1.34 LINK C PHE A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N ILE A 91 1555 1555 1.33 LINK C THR A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N ARG A 101 1555 1555 1.33 LINK C ILE A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ALA A 145 1555 1555 1.33 LINK C LYS A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N GLY A 220 1555 1555 1.33 LINK C GLN A 228 N MSE A 229 1555 1555 1.33 LINK C MSE A 229 N LEU A 230 1555 1555 1.33 CISPEP 1 PRO A 110 PRO A 111 0 2.48 SITE 1 AC1 3 VAL A 21 TYR A 22 ASN A 23 CRYST1 131.531 131.531 176.356 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007603 0.004389 0.000000 0.00000 SCALE2 0.000000 0.008779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005670 0.00000