HEADER HYDROLASE/HYDROLASE INHIBITOR 07-MAR-11 3QZR
TITLE HUMAN ENTEROVIRUS 71 3C PROTEASE MUTANT E71A IN COMPLEX WITH
TITLE 2 RUPINTRIVIR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 3C PROTEIN;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: 3C PROTEASE;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71;
SOURCE 3 ORGANISM_TAXID: 39054;
SOURCE 4 STRAIN: 71;
SOURCE 5 GENE: POLYPROTEIN;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A
KEYWDS CHYMOTRYPSIN-FOLD, BETA-RIBBON, HYDROLYSIS, NUCLEUS, HYDROLASE-
KEYWDS 2 HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN,S.CUI
REVDAT 5 21-FEB-24 3QZR 1 REMARK SEQADV
REVDAT 4 06-MAY-15 3QZR 1 COMPND
REVDAT 3 28-SEP-11 3QZR 1 JRNL
REVDAT 2 24-AUG-11 3QZR 1 AUTHOR JRNL
REVDAT 1 10-AUG-11 3QZR 0
JRNL AUTH J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN,
JRNL AUTH 2 S.CUI
JRNL TITL CRYSTAL STRUCTURES OF ENTEROVIRUS 71 3C PROTEASE COMPLEXED
JRNL TITL 2 WITH RUPINTRIVIR REVEAL THE ROLES OF CATALYTICALLY IMPORTANT
JRNL TITL 3 RESIDUES.
JRNL REF J.VIROL. V. 85 10021 2011
JRNL REFN ISSN 0022-538X
JRNL PMID 21813612
JRNL DOI 10.1128/JVI.05107-11
REMARK 2
REMARK 2 RESOLUTION. 1.04 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.04
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.64
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.240
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7
REMARK 3 NUMBER OF REFLECTIONS : 319101
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.151
REMARK 3 R VALUE (WORKING SET) : 0.150
REMARK 3 FREE R VALUE : 0.164
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 15949
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 25.6428 - 3.2263 0.97 10116 532 0.1893 0.1883
REMARK 3 2 3.2263 - 2.5616 0.99 10218 541 0.1574 0.1742
REMARK 3 3 2.5616 - 2.2380 1.00 10326 551 0.1447 0.1662
REMARK 3 4 2.2380 - 2.0334 0.96 9906 523 0.1271 0.1427
REMARK 3 5 2.0334 - 1.8877 0.97 10026 533 0.1230 0.1496
REMARK 3 6 1.8877 - 1.7765 0.99 10215 540 0.1266 0.1282
REMARK 3 7 1.7765 - 1.6875 0.99 10241 536 0.1227 0.1392
REMARK 3 8 1.6875 - 1.6141 0.99 10317 539 0.1151 0.1293
REMARK 3 9 1.6141 - 1.5520 0.99 10264 539 0.1146 0.1307
REMARK 3 10 1.5520 - 1.4984 0.97 10165 531 0.1123 0.1315
REMARK 3 11 1.4984 - 1.4516 0.97 10006 522 0.1143 0.1258
REMARK 3 12 1.4516 - 1.4101 0.98 10088 537 0.1166 0.1403
REMARK 3 13 1.4101 - 1.3729 0.98 10230 537 0.1202 0.1396
REMARK 3 14 1.3729 - 1.3395 0.99 10194 531 0.1171 0.1433
REMARK 3 15 1.3395 - 1.3090 0.99 10281 535 0.1221 0.1609
REMARK 3 16 1.3090 - 1.2811 0.99 10244 537 0.1257 0.1452
REMARK 3 17 1.2811 - 1.2555 0.99 10215 540 0.1277 0.1511
REMARK 3 18 1.2555 - 1.2318 0.99 10258 538 0.1324 0.1484
REMARK 3 19 1.2318 - 1.2098 0.97 10109 541 0.1421 0.1572
REMARK 3 20 1.2098 - 1.1893 0.96 9962 517 0.1423 0.1603
REMARK 3 21 1.1893 - 1.1701 0.97 10052 524 0.1408 0.1494
REMARK 3 22 1.1701 - 1.1521 0.98 10153 538 0.1506 0.1641
REMARK 3 23 1.1521 - 1.1352 0.98 10154 531 0.1520 0.1717
REMARK 3 24 1.1352 - 1.1192 0.98 10141 535 0.1648 0.1796
REMARK 3 25 1.1192 - 1.1041 0.98 10183 532 0.1717 0.1851
REMARK 3 26 1.1041 - 1.0897 0.98 10050 525 0.1868 0.1982
REMARK 3 27 1.0897 - 1.0761 0.98 10155 539 0.1965 0.2048
REMARK 3 28 1.0761 - 1.0632 0.98 10111 534 0.2160 0.2382
REMARK 3 29 1.0632 - 1.0508 0.96 9864 519 0.2368 0.2299
REMARK 3 30 1.0508 - 1.0390 0.86 8908 472 0.2615 0.2711
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : 0.44
REMARK 3 B_SOL : 63.47
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.450
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 13.38
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.011 3610
REMARK 3 ANGLE : 1.608 4989
REMARK 3 CHIRALITY : 0.148 560
REMARK 3 PLANARITY : 0.008 656
REMARK 3 DIHEDRAL : 15.986 1542
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3QZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-11.
REMARK 100 THE DEPOSITION ID IS D_1000064308.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-JUN-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.3
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.800000
REMARK 200 MONOCHROMATOR : DOUBLE CHANNEL-CUT SI(111)
REMARK 200 OPTICS : BARTELS MONOCHROMATOR
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS PACKAGE
REMARK 200 DATA SCALING SOFTWARE : XDS PACKAGE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 166419
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.039
REMARK 200 RESOLUTION RANGE LOW (A) : 100.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : 3.920
REMARK 200 R MERGE (I) : 0.02800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.04
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.10
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0
REMARK 200 DATA REDUNDANCY IN SHELL : 3.50
REMARK 200 R MERGE FOR SHELL (I) : 0.43500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.1
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.24
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS.HCL 100MM,PEG1000 28%, PH 8.3,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X,-Y+1/2,Z
REMARK 290 7555 -X+1/2,Y,-Z
REMARK 290 8555 X,-Y,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.89250
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.27000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.91100
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.27000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.89250
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.91100
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.89250
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.91100
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.27000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.91100
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.89250
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.27000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 CD GLN B 66 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 315 LIES ON A SPECIAL POSITION.
REMARK 375 HOH B 320 LIES ON A SPECIAL POSITION.
REMARK 375 HOH B 370 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 HIS A -1
REMARK 465 MET A 0
REMARK 465 SER A 181
REMARK 465 GLU A 182
REMARK 465 GLN A 183
REMARK 465 GLY B -3
REMARK 465 SER B -2
REMARK 465 HIS B -1
REMARK 465 MET B 0
REMARK 465 GLY B 1
REMARK 465 PRO B 2
REMARK 465 SER B 3
REMARK 465 LEU B 4
REMARK 465 SER B 181
REMARK 465 GLU B 182
REMARK 465 GLN B 183
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 PHE A 124 CE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 SG CYS B 147 C19 AG7 B 501 1.87
REMARK 500 SG CYS A 147 C19 AG7 A 501 1.89
REMARK 500 O HOH B 350 O HOH B 351 1.95
REMARK 500 O HOH B 374 O HOH B 381 2.10
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 31 130.19 -170.27
REMARK 500 ARG A 31 134.03 -170.27
REMARK 500 ASP A 32 -117.30 56.45
REMARK 500 ASP A 32 -117.30 49.76
REMARK 500 GLU A 50 58.86 36.77
REMARK 500 SER A 111 69.01 34.78
REMARK 500 TYR A 122 -54.38 -130.95
REMARK 500 ASP B 32 -125.19 51.20
REMARK 500 GLU B 50 59.54 37.71
REMARK 500 ASP B 64 -165.50 -128.44
REMARK 500 ASN B 69 125.50 -32.46
REMARK 500 SER B 111 67.90 38.91
REMARK 500 TYR B 122 -59.86 -128.54
REMARK 500 HIS B 133 -158.59 -143.69
REMARK 500 ARG B 134 31.27 75.73
REMARK 500 ARG B 134 38.11 39.47
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 184
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 184
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3OSY RELATED DB: PDB
REMARK 900 THIS IS THE APO STRUCTURE OF THE SAME PROTEIN
DBREF 3QZR A 1 183 UNP E7E815 E7E815_9ENTO 1 183
DBREF 3QZR B 1 183 UNP E7E815 E7E815_9ENTO 1 183
SEQADV 3QZR GLY A -3 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR SER A -2 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR HIS A -1 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR MET A 0 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR ALA A 71 UNP E7E815 GLU 71 ENGINEERED MUTATION
SEQADV 3QZR GLY B -3 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR SER B -2 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR HIS B -1 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR MET B 0 UNP E7E815 EXPRESSION TAG
SEQADV 3QZR ALA B 71 UNP E7E815 GLU 71 ENGINEERED MUTATION
SEQRES 1 A 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER
SEQRES 2 A 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN
SEQRES 3 A 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA
SEQRES 4 A 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP
SEQRES 5 A 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU
SEQRES 6 A 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ALA LEU THR LEU
SEQRES 7 A 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR
SEQRES 8 A 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA
SEQRES 9 A 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE
SEQRES 10 A 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN
SEQRES 11 A 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN
SEQRES 12 A 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR
SEQRES 13 A 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN
SEQRES 14 A 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR
SEQRES 15 A 187 PHE ALA SER GLU GLN
SEQRES 1 B 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER
SEQRES 2 B 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN
SEQRES 3 B 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA
SEQRES 4 B 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP
SEQRES 5 B 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU
SEQRES 6 B 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ALA LEU THR LEU
SEQRES 7 B 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR
SEQRES 8 B 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA
SEQRES 9 B 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE
SEQRES 10 B 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN
SEQRES 11 B 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN
SEQRES 12 B 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR
SEQRES 13 B 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN
SEQRES 14 B 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR
SEQRES 15 B 187 PHE ALA SER GLU GLN
HET AG7 A 501 83
HET EDO A 184 4
HET AG7 B 501 83
HET EDO B 184 4
HETNAM AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-
HETNAM 2 AG7 3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-
HETNAM 3 AG7 PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
HETNAM EDO 1,2-ETHANEDIOL
HETSYN AG7 RUPINTRIVIR, BOUND FORM
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 AG7 2(C31 H41 F N4 O7)
FORMUL 4 EDO 2(C2 H6 O2)
FORMUL 7 HOH *393(H2 O)
HELIX 1 1 GLY A 1 ASN A 14 1 14
HELIX 2 2 HIS A 40 GLN A 42 5 3
HELIX 3 3 ILE A 86 ILE A 90 5 5
HELIX 4 4 LYS A 175 ALA A 180 5 6
HELIX 5 5 ASP B 5 ASN B 14 1 10
HELIX 6 6 HIS B 40 GLN B 42 5 3
HELIX 7 7 ILE B 86 ILE B 90 5 5
HELIX 8 8 LYS B 175 ALA B 180 5 6
SHEET 1 A 7 VAL A 15 THR A 20 0
SHEET 2 A 7 GLY A 23 ARG A 31 -1 O MET A 27 N ARG A 16
SHEET 3 A 7 LEU A 34 PRO A 38 -1 O LEU A 34 N VAL A 30
SHEET 4 A 7 LEU A 72 LEU A 77 -1 O THR A 73 N LEU A 37
SHEET 5 A 7 LYS A 52 GLU A 61 -1 N VAL A 60 O LEU A 74
SHEET 6 A 7 THR A 46 ILE A 49 -1 N ILE A 49 O LYS A 52
SHEET 7 A 7 VAL A 15 THR A 20 -1 N GLN A 19 O TRP A 48
SHEET 1 B 7 ALA A 97 ILE A 104 0
SHEET 2 B 7 MET A 112 LEU A 127 -1 O MET A 112 N ILE A 104
SHEET 3 B 7 LYS A 130 TYR A 138 -1 O THR A 132 N LEU A 125
SHEET 4 B 7 GLY A 169 GLY A 173 -1 O GLY A 169 N TYR A 138
SHEET 5 B 7 LYS A 156 GLY A 164 -1 N ILE A 162 O PHE A 170
SHEET 6 B 7 VAL A 150 SER A 153 -1 N VAL A 151 O GLY A 159
SHEET 7 B 7 ALA A 97 ILE A 104 -1 N VAL A 103 O VAL A 150
SHEET 1 C 7 VAL B 15 THR B 20 0
SHEET 2 C 7 GLY B 23 ARG B 31 -1 O MET B 27 N ARG B 16
SHEET 3 C 7 LEU B 34 PRO B 38 -1 O LEU B 34 N VAL B 30
SHEET 4 C 7 LEU B 72 LEU B 77 -1 O THR B 73 N LEU B 37
SHEET 5 C 7 LYS B 52 GLU B 61 -1 N VAL B 60 O LEU B 74
SHEET 6 C 7 THR B 46 ILE B 49 -1 N ILE B 49 O LYS B 52
SHEET 7 C 7 VAL B 15 THR B 20 -1 N GLN B 19 O TRP B 48
SHEET 1 D 7 ALA B 97 ILE B 104 0
SHEET 2 D 7 MET B 112 LEU B 127 -1 O VAL B 119 N ALA B 97
SHEET 3 D 7 LYS B 130 TYR B 138 -1 O MET B 137 N VAL B 120
SHEET 4 D 7 GLY B 169 GLY B 173 -1 O GLY B 169 N TYR B 138
SHEET 5 D 7 LYS B 156 GLY B 164 -1 N ILE B 162 O PHE B 170
SHEET 6 D 7 VAL B 150 SER B 153 -1 N VAL B 151 O GLY B 159
SHEET 7 D 7 ALA B 97 ILE B 104 -1 N THR B 101 O THR B 152
SITE 1 AC1 21 ARG A 39 HIS A 40 LEU A 125 ASN A 126
SITE 2 AC1 21 LEU A 127 SER A 128 LYS A 130 THR A 142
SITE 3 AC1 21 LYS A 143 ALA A 144 GLY A 145 CYS A 147
SITE 4 AC1 21 HIS A 161 ILE A 162 GLY A 163 GLY A 164
SITE 5 AC1 21 ASN A 165 PHE A 170 EDO A 184 HOH A 252
SITE 6 AC1 21 HOH A 358
SITE 1 AC2 7 GLN A 22 GLY A 23 HIS A 24 HOH A 200
SITE 2 AC2 7 HOH A 260 HOH A 281 AG7 A 501
SITE 1 AC3 21 ARG B 39 HIS B 40 LEU B 125 ASN B 126
SITE 2 AC3 21 LEU B 127 SER B 128 LYS B 130 THR B 142
SITE 3 AC3 21 LYS B 143 ALA B 144 GLY B 145 CYS B 147
SITE 4 AC3 21 HIS B 161 ILE B 162 GLY B 163 GLY B 164
SITE 5 AC3 21 ASN B 165 PHE B 170 EDO B 184 HOH B 314
SITE 6 AC3 21 HOH B 328
SITE 1 AC4 7 GLN B 22 GLY B 23 HIS B 24 GLY B 145
SITE 2 AC4 7 HOH B 194 HOH B 259 AG7 B 501
CRYST1 69.785 97.822 102.540 90.00 90.00 90.00 I 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014330 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010223 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009752 0.00000