HEADER HYDROLASE 07-MAR-11 3R0D TITLE CRYSTAL STRUCTURE OF CYTOSINE DEAMINASE FROM ESCHERICHIA COLI TITLE 2 COMPLEXED WITH TWO ZINC ATOMS IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSINE AMINOHYDROLASE; COMPND 5 EC: 3.5.4.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: CODA, B0337, JW0328; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,S.KAMAT,D.HITCHCOCK,F.M.RAUSHEL,S.C.ALMO REVDAT 2 13-SEP-23 3R0D 1 REMARK LINK REVDAT 1 07-MAR-12 3R0D 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,S.KAMAT,D.HITCHCOCK,F.M.RAUSHEL, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF CYTOSINE DEAMINASE FROM ESCHERICHIA JRNL TITL 2 COLI COMPLEXED WITH TWO ZINC ATOMS IN THE ACTIVE SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 128094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 6438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1421 - 4.6624 1.00 4251 235 0.1691 0.1828 REMARK 3 2 4.6624 - 3.7016 1.00 4148 225 0.1464 0.1606 REMARK 3 3 3.7016 - 3.2340 1.00 4081 254 0.1604 0.1766 REMARK 3 4 3.2340 - 2.9384 1.00 4127 211 0.1816 0.2051 REMARK 3 5 2.9384 - 2.7278 1.00 4132 192 0.1918 0.2249 REMARK 3 6 2.7278 - 2.5670 1.00 4073 230 0.1855 0.2212 REMARK 3 7 2.5670 - 2.4385 1.00 4089 212 0.1869 0.1926 REMARK 3 8 2.4385 - 2.3324 1.00 4067 219 0.1854 0.2254 REMARK 3 9 2.3324 - 2.2426 1.00 4089 238 0.1939 0.2162 REMARK 3 10 2.2426 - 2.1652 1.00 4059 228 0.1888 0.2037 REMARK 3 11 2.1652 - 2.0975 1.00 4069 220 0.1926 0.2189 REMARK 3 12 2.0975 - 2.0376 1.00 4084 194 0.1981 0.2272 REMARK 3 13 2.0376 - 1.9839 1.00 4068 208 0.2046 0.2264 REMARK 3 14 1.9839 - 1.9355 1.00 4096 195 0.2123 0.2544 REMARK 3 15 1.9355 - 1.8915 1.00 4106 180 0.2229 0.2320 REMARK 3 16 1.8915 - 1.8513 1.00 4051 217 0.2294 0.2560 REMARK 3 17 1.8513 - 1.8142 1.00 4039 211 0.2263 0.2189 REMARK 3 18 1.8142 - 1.7800 1.00 4100 209 0.2345 0.2587 REMARK 3 19 1.7800 - 1.7482 1.00 4035 213 0.2500 0.2446 REMARK 3 20 1.7482 - 1.7186 1.00 4084 194 0.2589 0.2788 REMARK 3 21 1.7186 - 1.6909 1.00 4040 217 0.2831 0.2726 REMARK 3 22 1.6909 - 1.6648 1.00 4082 206 0.2966 0.3221 REMARK 3 23 1.6648 - 1.6404 1.00 3995 219 0.3117 0.3169 REMARK 3 24 1.6404 - 1.6172 1.00 4075 192 0.3242 0.3214 REMARK 3 25 1.6172 - 1.5954 1.00 4022 246 0.3372 0.3431 REMARK 3 26 1.5954 - 1.5747 1.00 3997 238 0.3532 0.3781 REMARK 3 27 1.5747 - 1.5550 1.00 4038 231 0.3684 0.3613 REMARK 3 28 1.5550 - 1.5363 0.99 4037 208 0.3864 0.4231 REMARK 3 29 1.5363 - 1.5184 0.99 4003 209 0.4155 0.4153 REMARK 3 30 1.5184 - 1.5013 0.87 3519 187 0.4290 0.4580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 43.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.82720 REMARK 3 B22 (A**2) : 2.82720 REMARK 3 B33 (A**2) : -5.65440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3449 REMARK 3 ANGLE : 0.983 4691 REMARK 3 CHIRALITY : 0.064 524 REMARK 3 PLANARITY : 0.004 612 REMARK 3 DIHEDRAL : 13.132 1272 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.501 REMARK 200 RESOLUTION RANGE LOW (A) : 39.129 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3O7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PENTAERYTHRITOL PROPOXYLATE, 0.05 REMARK 280 M HEPES, 0.2M POTASSIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 72.74600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.99992 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.56800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 72.74600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.99992 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.56800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 72.74600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.99992 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.56800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 72.74600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.99992 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.56800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 72.74600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.99992 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.56800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 72.74600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.99992 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.56800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.99985 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 133.13600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 83.99985 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 133.13600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 83.99985 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 133.13600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 83.99985 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 133.13600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 83.99985 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 133.13600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 83.99985 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 133.13600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -192.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -72.74600 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 -41.99992 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.56800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 470 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 604 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 614 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 433 O HOH A 434 1.81 REMARK 500 NE2 HIS A 246 O HOH A 433 2.00 REMARK 500 OD1 ASP A 313 O HOH A 433 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 25 118.98 -166.87 REMARK 500 ASP A 127 112.94 -166.56 REMARK 500 ILE A 183 67.54 -153.11 REMARK 500 ILE A 218 142.13 -170.27 REMARK 500 HIS A 246 -73.96 76.70 REMARK 500 THR A 288 -94.33 -95.20 REMARK 500 ASP A 313 -65.41 75.22 REMARK 500 TYR A 320 111.00 -160.53 REMARK 500 LEU A 322 -166.71 -123.47 REMARK 500 THR A 354 -96.03 -130.82 REMARK 500 LEU A 416 -116.07 -97.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 428 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 NE2 REMARK 620 2 HIS A 63 NE2 111.6 REMARK 620 3 HIS A 214 NE2 99.5 108.3 REMARK 620 4 HOH A 434 O 122.4 114.7 96.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 430 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 GLU A 138 OE2 111.5 REMARK 620 3 GLU A 138 OE1 89.6 56.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 429 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 313 OD1 REMARK 620 2 ASP A 313 OD2 55.6 REMARK 620 3 HOH A 433 O 62.4 91.8 REMARK 620 4 HOH A 434 O 104.1 87.1 55.1 REMARK 620 5 HOH A 435 O 99.6 155.0 71.0 97.0 REMARK 620 6 HOH A 436 O 142.8 91.9 144.9 90.2 112.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXN A 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 432 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O7U RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH INHIBITOR DBREF 3R0D A 0 426 UNP P25524 CODA_ECOLI 1 427 SEQRES 1 A 427 MET SER ASN ASN ALA LEU GLN THR ILE ILE ASN ALA ARG SEQRES 2 A 427 LEU PRO GLY GLU GLU GLY LEU TRP GLN ILE HIS LEU GLN SEQRES 3 A 427 ASP GLY LYS ILE SER ALA ILE ASP ALA GLN SER GLY VAL SEQRES 4 A 427 MET PRO ILE THR GLU ASN SER LEU ASP ALA GLU GLN GLY SEQRES 5 A 427 LEU VAL ILE PRO PRO PHE VAL GLU PRO HIS ILE HIS LEU SEQRES 6 A 427 ASP THR THR GLN THR ALA GLY GLN PRO ASN TRP ASN GLN SEQRES 7 A 427 SER GLY THR LEU PHE GLU GLY ILE GLU ARG TRP ALA GLU SEQRES 8 A 427 ARG LYS ALA LEU LEU THR HIS ASP ASP VAL LYS GLN ARG SEQRES 9 A 427 ALA TRP GLN THR LEU LYS TRP GLN ILE ALA ASN GLY ILE SEQRES 10 A 427 GLN HIS VAL ARG THR HIS VAL ASP VAL SER ASP ALA THR SEQRES 11 A 427 LEU THR ALA LEU LYS ALA MET LEU GLU VAL LYS GLN GLU SEQRES 12 A 427 VAL ALA PRO TRP ILE ASP LEU GLN ILE VAL ALA PHE PRO SEQRES 13 A 427 GLN GLU GLY ILE LEU SER TYR PRO ASN GLY GLU ALA LEU SEQRES 14 A 427 LEU GLU GLU ALA LEU ARG LEU GLY ALA ASP VAL VAL GLY SEQRES 15 A 427 ALA ILE PRO HIS PHE GLU PHE THR ARG GLU TYR GLY VAL SEQRES 16 A 427 GLU SER LEU HIS LYS THR PHE ALA LEU ALA GLN LYS TYR SEQRES 17 A 427 ASP ARG LEU ILE ASP VAL HIS CYS ASP GLU ILE ASP ASP SEQRES 18 A 427 GLU GLN SER ARG PHE VAL GLU THR VAL ALA ALA LEU ALA SEQRES 19 A 427 HIS HIS GLU GLY MET GLY ALA ARG VAL THR ALA SER HIS SEQRES 20 A 427 THR THR ALA MET HIS SER TYR ASN GLY ALA TYR THR SER SEQRES 21 A 427 ARG LEU PHE ARG LEU LEU LYS MET SER GLY ILE ASN PHE SEQRES 22 A 427 VAL ALA ASN PRO LEU VAL ASN ILE HIS LEU GLN GLY ARG SEQRES 23 A 427 PHE ASP THR TYR PRO LYS ARG ARG GLY ILE THR ARG VAL SEQRES 24 A 427 LYS GLU MET LEU GLU SER GLY ILE ASN VAL CYS PHE GLY SEQRES 25 A 427 HIS ASP ASP VAL PHE ASP PRO TRP TYR PRO LEU GLY THR SEQRES 26 A 427 ALA ASN MET LEU GLN VAL LEU HIS MET GLY LEU HIS VAL SEQRES 27 A 427 CYS GLN LEU MET GLY TYR GLY GLN ILE ASN ASP GLY LEU SEQRES 28 A 427 ASN LEU ILE THR HIS HIS SER ALA ARG THR LEU ASN LEU SEQRES 29 A 427 GLN ASP TYR GLY ILE ALA ALA GLY ASN SER ALA ASN LEU SEQRES 30 A 427 ILE ILE LEU PRO ALA GLU ASN GLY PHE ASP ALA LEU ARG SEQRES 31 A 427 ARG GLN VAL PRO VAL ARG TYR SER VAL ARG GLY GLY LYS SEQRES 32 A 427 VAL ILE ALA SER THR GLN PRO ALA GLN THR THR VAL TYR SEQRES 33 A 427 LEU GLU GLN PRO GLU ALA ILE ASP TYR LYS ARG HET PXN A 427 25 HET ZN A 428 1 HET ZN A 429 1 HET ZN A 430 1 HET GOL A 431 6 HET GOL A 432 6 HETNAM PXN (2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2- HETNAM 2 PXN HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN PXN PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PXN C17 H36 O8 FORMUL 3 ZN 3(ZN 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *233(H2 O) HELIX 1 1 THR A 80 ALA A 93 1 14 HELIX 2 2 THR A 96 ASN A 114 1 19 HELIX 3 3 LEU A 130 ALA A 144 1 15 HELIX 4 4 ASN A 164 GLY A 176 1 13 HELIX 5 5 ILE A 183 GLU A 187 5 5 HELIX 6 6 THR A 189 ASP A 208 1 20 HELIX 7 7 ARG A 224 GLY A 237 1 14 HELIX 8 8 MET A 238 ALA A 240 5 3 HELIX 9 9 THR A 248 TYR A 253 5 6 HELIX 10 10 ASN A 254 GLY A 269 1 16 HELIX 11 11 ASN A 275 GLN A 283 1 9 HELIX 12 12 ARG A 297 GLY A 305 1 9 HELIX 13 13 ASN A 326 CYS A 338 1 13 HELIX 14 14 GLY A 342 ASP A 348 1 7 HELIX 15 15 GLY A 349 ILE A 353 5 5 HELIX 16 16 THR A 354 LEU A 361 1 8 HELIX 17 17 ASN A 383 GLN A 391 1 9 SHEET 1 A 4 LYS A 28 ALA A 34 0 SHEET 2 A 4 TRP A 20 GLN A 25 -1 N GLN A 21 O ASP A 33 SHEET 3 A 4 THR A 7 ALA A 11 -1 N ILE A 8 O ILE A 22 SHEET 4 A 4 SER A 45 ASP A 47 1 O LEU A 46 N THR A 7 SHEET 1 B 4 LEU A 52 ILE A 54 0 SHEET 2 B 4 LEU A 376 LEU A 379 -1 O ILE A 377 N ILE A 54 SHEET 3 B 4 TYR A 396 ARG A 399 -1 O VAL A 398 N LEU A 376 SHEET 4 B 4 LYS A 402 SER A 406 -1 O LYS A 402 N ARG A 399 SHEET 1 C 8 PHE A 57 ILE A 62 0 SHEET 2 C 8 ILE A 116 ASP A 124 1 O ARG A 120 N GLU A 59 SHEET 3 C 8 ASP A 148 PHE A 154 1 O GLN A 150 N VAL A 119 SHEET 4 C 8 VAL A 179 ALA A 182 1 O VAL A 179 N ALA A 153 SHEET 5 C 8 LEU A 210 CYS A 215 1 O LEU A 210 N VAL A 180 SHEET 6 C 8 VAL A 242 HIS A 246 1 O SER A 245 N VAL A 213 SHEET 7 C 8 ASN A 271 ALA A 274 1 O ASN A 271 N ALA A 244 SHEET 8 C 8 VAL A 308 PHE A 310 1 O CYS A 309 N ALA A 274 SHEET 1 D 2 THR A 412 TYR A 415 0 SHEET 2 D 2 PRO A 419 ILE A 422 -1 O GLU A 420 N VAL A 414 LINK NE2 HIS A 61 ZN ZN A 428 1555 1555 2.11 LINK NE2 HIS A 63 ZN ZN A 428 1555 1555 2.02 LINK NE2 HIS A 97 ZN ZN A 430 1555 1555 2.13 LINK OE2 GLU A 138 ZN ZN A 430 1555 1555 2.18 LINK OE1 GLU A 138 ZN ZN A 430 1555 1555 2.44 LINK NE2 HIS A 214 ZN ZN A 428 1555 1555 2.10 LINK OD1 ASP A 313 ZN ZN A 429 1555 1555 2.17 LINK OD2 ASP A 313 ZN ZN A 429 1555 1555 2.48 LINK ZN ZN A 428 O HOH A 434 1555 1555 2.01 LINK ZN ZN A 429 O HOH A 433 1555 1555 1.85 LINK ZN ZN A 429 O HOH A 434 1555 1555 2.04 LINK ZN ZN A 429 O HOH A 435 1555 1555 2.12 LINK ZN ZN A 429 O HOH A 436 1555 1555 2.13 CISPEP 1 GLN A 72 PRO A 73 0 -3.64 CISPEP 2 TYR A 289 PRO A 290 0 -0.37 SITE 1 AC1 5 ASP A 98 GLN A 102 TRP A 105 LYS A 109 SITE 2 AC1 5 GLU A 420 SITE 1 AC2 6 HIS A 61 HIS A 63 HIS A 214 ASP A 313 SITE 2 AC2 6 ZN A 429 HOH A 434 SITE 1 AC3 7 ASP A 313 ASP A 314 ZN A 428 HOH A 433 SITE 2 AC3 7 HOH A 434 HOH A 435 HOH A 436 SITE 1 AC4 2 HIS A 97 GLU A 138 SITE 1 AC5 10 GLU A 49 GLN A 50 GLY A 51 PRO A 380 SITE 2 AC5 10 ALA A 381 GLU A 382 ASP A 386 ARG A 390 SITE 3 AC5 10 LYS A 425 HOH A 579 SITE 1 AC6 3 SER A 259 GLU A 300 HOH A 547 CRYST1 145.492 145.492 199.704 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006873 0.003968 0.000000 0.00000 SCALE2 0.000000 0.007937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005007 0.00000