HEADER HYDROLASE/HYDROLASE INHIBITOR 08-MAR-11 3R0F TITLE HUMAN ENTEROVIRUS 71 3C PROTEASE MUTANT H133G IN COMPLEX WITH TITLE 2 RUPINTRIVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3C PROTEASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 STRAIN: 71; SOURCE 5 GENE: POLYPROTEIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS CHYMOTRYPSIN-FOLD, BETA-RIBBON, HYDROLYSIS, NUCLEUS, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN,S.CUI REVDAT 5 13-SEP-23 3R0F 1 REMARK SEQADV REVDAT 4 06-MAY-15 3R0F 1 COMPND REVDAT 3 28-SEP-11 3R0F 1 JRNL REVDAT 2 24-AUG-11 3R0F 1 AUTHOR JRNL REVDAT 1 10-AUG-11 3R0F 0 JRNL AUTH J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN, JRNL AUTH 2 S.CUI JRNL TITL CRYSTAL STRUCTURES OF ENTEROVIRUS 71 3C PROTEASE COMPLEXED JRNL TITL 2 WITH RUPINTRIVIR REVEAL THE ROLES OF CATALYTICALLY IMPORTANT JRNL TITL 3 RESIDUES. JRNL REF J.VIROL. V. 85 10021 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21813612 JRNL DOI 10.1128/JVI.05107-11 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 158376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 7906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.7230 - 4.0647 0.97 5083 267 0.1818 0.1905 REMARK 3 2 4.0647 - 3.2264 0.99 5168 274 0.1387 0.1610 REMARK 3 3 3.2264 - 2.8185 0.97 5025 258 0.1452 0.1485 REMARK 3 4 2.8185 - 2.5608 0.95 4990 258 0.1381 0.1723 REMARK 3 5 2.5608 - 2.3773 0.97 5049 266 0.1222 0.1484 REMARK 3 6 2.3773 - 2.2371 0.98 5131 272 0.1122 0.1392 REMARK 3 7 2.2371 - 2.1251 0.99 5137 269 0.1127 0.1309 REMARK 3 8 2.1251 - 2.0326 0.99 5126 267 0.1033 0.1180 REMARK 3 9 2.0326 - 1.9543 0.95 5006 269 0.1097 0.1483 REMARK 3 10 1.9543 - 1.8869 0.96 4950 253 0.1044 0.1361 REMARK 3 11 1.8869 - 1.8279 0.97 5075 267 0.1124 0.1410 REMARK 3 12 1.8279 - 1.7756 0.98 5095 261 0.1141 0.1613 REMARK 3 13 1.7756 - 1.7289 0.98 5148 275 0.1170 0.1632 REMARK 3 14 1.7289 - 1.6867 0.99 5093 265 0.1188 0.1670 REMARK 3 15 1.6867 - 1.6483 0.99 5116 274 0.1225 0.1705 REMARK 3 16 1.6483 - 1.6133 0.98 5127 269 0.1240 0.1765 REMARK 3 17 1.6133 - 1.5810 0.95 4863 253 0.1418 0.1946 REMARK 3 18 1.5810 - 1.5512 0.97 5041 264 0.1388 0.1772 REMARK 3 19 1.5512 - 1.5235 0.97 5054 265 0.1525 0.1827 REMARK 3 20 1.5235 - 1.4976 0.97 5125 272 0.1646 0.2042 REMARK 3 21 1.4976 - 1.4735 0.98 5097 268 0.1750 0.2177 REMARK 3 22 1.4735 - 1.4508 0.98 5036 267 0.1819 0.2412 REMARK 3 23 1.4508 - 1.4295 0.98 5124 272 0.1892 0.2275 REMARK 3 24 1.4295 - 1.4093 0.98 5059 267 0.1829 0.2376 REMARK 3 25 1.4093 - 1.3903 0.97 5005 264 0.2005 0.2741 REMARK 3 26 1.3903 - 1.3722 0.94 4917 266 0.2150 0.2747 REMARK 3 27 1.3722 - 1.3551 0.94 4899 256 0.2145 0.2527 REMARK 3 28 1.3551 - 1.3387 0.96 4976 253 0.2087 0.2629 REMARK 3 29 1.3387 - 1.3232 0.96 5034 263 0.2215 0.2391 REMARK 3 30 1.3232 - 1.3083 0.75 3921 212 0.2356 0.2626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 54.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74050 REMARK 3 B22 (A**2) : 1.24880 REMARK 3 B33 (A**2) : -1.98930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3153 REMARK 3 ANGLE : 1.210 4296 REMARK 3 CHIRALITY : 0.097 491 REMARK 3 PLANARITY : 0.008 554 REMARK 3 DIHEDRAL : 15.487 1311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CHANNEL-CUT SI(111) REMARK 200 OPTICS : BARTELS MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS PACKAGE REMARK 200 DATA SCALING SOFTWARE : XDS PACKAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.308 REMARK 200 RESOLUTION RANGE LOW (A) : 57.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.36 REMARK 200 R MERGE FOR SHELL (I) : 0.60700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V2.1 REMARK 200 STARTING MODEL: PDB ENTRY 1CQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL 0.1M, PEG1000 26%, PH 8.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.85800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.30950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.10150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.30950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.85800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.10150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.85800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.10150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.30950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.10150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.85800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.30950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 255 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 283 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLU A 182 REMARK 465 GLN A 183 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 SER B 181 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 181 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 124 CE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 147 C19 AG7 A 501 1.95 REMARK 500 SG CYS B 147 C19 AG7 B 501 1.98 REMARK 500 N ASP B 5 O HOH B 289 2.02 REMARK 500 O HOH A 199 O HOH A 200 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 31 140.43 -170.70 REMARK 500 ARG A 31 139.96 -170.34 REMARK 500 ASP A 32 -116.87 49.02 REMARK 500 ASP A 32 -116.94 48.91 REMARK 500 SER A 111 68.79 33.97 REMARK 500 TYR A 122 -56.13 -126.46 REMARK 500 VAL A 154 111.25 -17.77 REMARK 500 ASP B 32 -124.41 50.74 REMARK 500 SER B 111 76.86 29.85 REMARK 500 TYR B 122 -51.55 -122.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 185 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OSY RELATED DB: PDB REMARK 900 THIS IS THE APO STRUCTURE OF THE SAME PROTEIN DBREF 3R0F A 1 183 UNP E7E815 E7E815_9ENTO 1 183 DBREF 3R0F B 1 183 UNP E7E815 E7E815_9ENTO 1 183 SEQADV 3R0F GLY A -3 UNP E7E815 EXPRESSION TAG SEQADV 3R0F SER A -2 UNP E7E815 EXPRESSION TAG SEQADV 3R0F HIS A -1 UNP E7E815 EXPRESSION TAG SEQADV 3R0F MET A 0 UNP E7E815 EXPRESSION TAG SEQADV 3R0F GLY A 133 UNP E7E815 HIS 133 ENGINEERED MUTATION SEQADV 3R0F GLY B -3 UNP E7E815 EXPRESSION TAG SEQADV 3R0F SER B -2 UNP E7E815 EXPRESSION TAG SEQADV 3R0F HIS B -1 UNP E7E815 EXPRESSION TAG SEQADV 3R0F MET B 0 UNP E7E815 EXPRESSION TAG SEQADV 3R0F GLY B 133 UNP E7E815 HIS 133 ENGINEERED MUTATION SEQRES 1 A 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER SEQRES 2 A 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN SEQRES 3 A 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA SEQRES 4 A 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP SEQRES 5 A 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU SEQRES 6 A 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU GLU LEU THR LEU SEQRES 7 A 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR SEQRES 8 A 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA SEQRES 9 A 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE SEQRES 10 A 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN SEQRES 11 A 187 LEU SER GLY LYS PRO THR GLY ARG THR MET MET TYR ASN SEQRES 12 A 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SEQRES 13 A 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN SEQRES 14 A 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR SEQRES 15 A 187 PHE ALA SER GLU GLN SEQRES 1 B 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER SEQRES 2 B 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN SEQRES 3 B 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA SEQRES 4 B 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP SEQRES 5 B 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU SEQRES 6 B 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU GLU LEU THR LEU SEQRES 7 B 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR SEQRES 8 B 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA SEQRES 9 B 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE SEQRES 10 B 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN SEQRES 11 B 187 LEU SER GLY LYS PRO THR GLY ARG THR MET MET TYR ASN SEQRES 12 B 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SEQRES 13 B 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN SEQRES 14 B 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR SEQRES 15 B 187 PHE ALA SER GLU GLN HET AG7 A 501 80 HET EDO A 184 10 HET EDO A 185 10 HET AG7 B 501 80 HET EDO B 184 10 HET EDO B 185 10 HETNAM AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE- HETNAM 2 AG7 3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO- HETNAM 3 AG7 PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER HETNAM EDO 1,2-ETHANEDIOL HETSYN AG7 RUPINTRIVIR, BOUND FORM HETSYN EDO ETHYLENE GLYCOL FORMUL 3 AG7 2(C31 H41 F N4 O7) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *293(H2 O) HELIX 1 1 GLY A 1 ASN A 14 1 14 HELIX 2 2 HIS A 40 GLN A 42 5 3 HELIX 3 3 ILE A 86 ILE A 90 5 5 HELIX 4 4 LYS A 175 ALA A 180 5 6 HELIX 5 5 ASP B 5 ASN B 14 1 10 HELIX 6 6 HIS B 40 GLN B 42 5 3 HELIX 7 7 ILE B 86 ILE B 90 5 5 HELIX 8 8 LYS B 175 ALA B 180 5 6 SHEET 1 A 7 VAL A 15 THR A 20 0 SHEET 2 A 7 GLY A 23 ARG A 31 -1 O PHE A 25 N VAL A 18 SHEET 3 A 7 LEU A 34 PRO A 38 -1 O LEU A 34 N ARG A 31 SHEET 4 A 7 ASN A 69 LEU A 77 -1 O THR A 73 N LEU A 37 SHEET 5 A 7 LYS A 52 VAL A 63 -1 N LEU A 62 O LEU A 72 SHEET 6 A 7 THR A 46 ILE A 49 -1 N ILE A 49 O LYS A 52 SHEET 7 A 7 VAL A 15 THR A 20 -1 N GLN A 19 O TRP A 48 SHEET 1 B 7 ALA A 97 ILE A 104 0 SHEET 2 B 7 MET A 112 LEU A 127 -1 O VAL A 114 N LEU A 102 SHEET 3 B 7 LYS A 130 TYR A 138 -1 O THR A 132 N LEU A 125 SHEET 4 B 7 GLY A 169 GLY A 173 -1 O GLY A 169 N TYR A 138 SHEET 5 B 7 LYS A 156 GLY A 164 -1 N ILE A 160 O ALA A 172 SHEET 6 B 7 VAL A 150 SER A 153 -1 N VAL A 151 O GLY A 159 SHEET 7 B 7 ALA A 97 ILE A 104 -1 N THR A 101 O THR A 152 SHEET 1 C 7 VAL B 15 THR B 20 0 SHEET 2 C 7 GLY B 23 ARG B 31 -1 O MET B 27 N ARG B 16 SHEET 3 C 7 LEU B 34 PRO B 38 -1 O LEU B 34 N VAL B 30 SHEET 4 C 7 ASN B 69 LEU B 77 -1 O THR B 73 N LEU B 37 SHEET 5 C 7 LYS B 52 VAL B 63 -1 N LEU B 62 O LEU B 72 SHEET 6 C 7 THR B 46 ILE B 49 -1 N ILE B 49 O LYS B 52 SHEET 7 C 7 VAL B 15 THR B 20 -1 N GLN B 19 O TRP B 48 SHEET 1 D 7 ALA B 97 ILE B 104 0 SHEET 2 D 7 MET B 112 LEU B 127 -1 O VAL B 119 N ALA B 97 SHEET 3 D 7 LYS B 130 TYR B 138 -1 O MET B 137 N VAL B 120 SHEET 4 D 7 GLY B 169 GLY B 173 -1 O GLY B 169 N TYR B 138 SHEET 5 D 7 LYS B 156 GLY B 164 -1 N ILE B 162 O PHE B 170 SHEET 6 D 7 VAL B 150 SER B 153 -1 N VAL B 151 O GLY B 159 SHEET 7 D 7 ALA B 97 ILE B 104 -1 N THR B 101 O THR B 152 SITE 1 AC1 21 ARG A 39 HIS A 40 GLU A 71 LEU A 125 SITE 2 AC1 21 ASN A 126 LEU A 127 SER A 128 LYS A 130 SITE 3 AC1 21 THR A 142 LYS A 143 ALA A 144 GLY A 145 SITE 4 AC1 21 CYS A 147 HIS A 161 ILE A 162 GLY A 163 SITE 5 AC1 21 GLY A 164 ASN A 165 PHE A 170 EDO A 185 SITE 6 AC1 21 HOH A 316 SITE 1 AC2 4 GLN A 17 TRP A 48 GLU A 50 HIS A 51 SITE 1 AC3 6 GLN A 22 GLY A 23 HIS A 24 GLY A 145 SITE 2 AC3 6 HOH A 203 AG7 A 501 SITE 1 AC4 21 LEU A 53 HOH A 257 ARG B 39 HIS B 40 SITE 2 AC4 21 GLU B 71 ASN B 126 LEU B 127 SER B 128 SITE 3 AC4 21 LYS B 130 THR B 142 LYS B 143 ALA B 144 SITE 4 AC4 21 GLY B 145 CYS B 147 HIS B 161 ILE B 162 SITE 5 AC4 21 GLY B 163 GLY B 164 ASN B 165 PHE B 170 SITE 6 AC4 21 EDO B 185 SITE 1 AC5 4 GLN B 17 TRP B 48 GLU B 50 HIS B 51 SITE 1 AC6 7 GLN B 22 GLY B 23 HIS B 24 GLY B 145 SITE 2 AC6 7 HOH B 197 HOH B 247 AG7 B 501 CRYST1 69.716 98.203 102.619 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009745 0.00000