data_3R0N # _entry.id 3R0N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3R0N RCSB RCSB064340 WWPDB D_1000064340 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGRC-005598 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3R0N _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-08 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ramagopal, U.A.' 1 'Samanta, D.' 2 'Nathenson, S.G.' 3 'Almo, S.C.' 4 'New York Structural Genomics Research Consortium (NYSGRC)' 5 'Atoms-to-Animals: The Immune Function Network (IFN)' 6 # _citation.id primary _citation.title 'Structure of Nectin-2 reveals determinants of homophilic and heterophilic interactions that control cell-cell adhesion.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 14836 _citation.page_last 14840 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22927415 _citation.pdbx_database_id_DOI 10.1073/pnas.1212912109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Samanta, D.' 1 primary 'Ramagopal, U.A.' 2 primary 'Rubinstein, R.' 3 primary 'Vigdorovich, V.' 4 primary 'Nathenson, S.G.' 5 primary 'Almo, S.C.' 6 # _cell.length_a 57.964 _cell.length_b 57.964 _cell.length_c 67.544 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3R0N _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3R0N _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Poliovirus receptor-related protein 2' 13950.778 1 ? ? 'Ig-like V-type domain residues 32-158' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 134 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Herpes virus entry mediator B, Herpesvirus entry mediator B, HveB, Nectin-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQ STGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV ; _entity_poly.pdbx_seq_one_letter_code_can ;MQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQ STGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-005598 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ASP n 1 4 VAL n 1 5 ARG n 1 6 VAL n 1 7 GLN n 1 8 VAL n 1 9 LEU n 1 10 PRO n 1 11 GLU n 1 12 VAL n 1 13 ARG n 1 14 GLY n 1 15 GLN n 1 16 LEU n 1 17 GLY n 1 18 GLY n 1 19 THR n 1 20 VAL n 1 21 GLU n 1 22 LEU n 1 23 PRO n 1 24 CYS n 1 25 HIS n 1 26 LEU n 1 27 LEU n 1 28 PRO n 1 29 PRO n 1 30 VAL n 1 31 PRO n 1 32 GLY n 1 33 LEU n 1 34 TYR n 1 35 ILE n 1 36 SER n 1 37 LEU n 1 38 VAL n 1 39 THR n 1 40 TRP n 1 41 GLN n 1 42 ARG n 1 43 PRO n 1 44 ASP n 1 45 ALA n 1 46 PRO n 1 47 ALA n 1 48 ASN n 1 49 HIS n 1 50 GLN n 1 51 ASN n 1 52 VAL n 1 53 ALA n 1 54 ALA n 1 55 PHE n 1 56 HIS n 1 57 PRO n 1 58 LYS n 1 59 MET n 1 60 GLY n 1 61 PRO n 1 62 SER n 1 63 PHE n 1 64 PRO n 1 65 SER n 1 66 PRO n 1 67 LYS n 1 68 PRO n 1 69 GLY n 1 70 SER n 1 71 GLU n 1 72 ARG n 1 73 LEU n 1 74 SER n 1 75 PHE n 1 76 VAL n 1 77 SER n 1 78 ALA n 1 79 LYS n 1 80 GLN n 1 81 SER n 1 82 THR n 1 83 GLY n 1 84 GLN n 1 85 ASP n 1 86 THR n 1 87 GLU n 1 88 ALA n 1 89 GLU n 1 90 LEU n 1 91 GLN n 1 92 ASP n 1 93 ALA n 1 94 THR n 1 95 LEU n 1 96 ALA n 1 97 LEU n 1 98 HIS n 1 99 GLY n 1 100 LEU n 1 101 THR n 1 102 VAL n 1 103 GLU n 1 104 ASP n 1 105 GLU n 1 106 GLY n 1 107 ASN n 1 108 TYR n 1 109 THR n 1 110 CYS n 1 111 GLU n 1 112 PHE n 1 113 ALA n 1 114 THR n 1 115 PHE n 1 116 PRO n 1 117 LYS n 1 118 GLY n 1 119 SER n 1 120 VAL n 1 121 ARG n 1 122 GLY n 1 123 MET n 1 124 THR n 1 125 TRP n 1 126 LEU n 1 127 ARG n 1 128 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'HVEB, PRR2, PVRL2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PVRL2_HUMAN _struct_ref.pdbx_db_accession Q92692 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQS TGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R0N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92692 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 158 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 32 _struct_ref_seq.pdbx_auth_seq_align_end 158 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3R0N _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q92692 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'INITIATING METHIONINE' _struct_ref_seq_dif.pdbx_auth_seq_num 31 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3R0N _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2 M MgCl2.6H20, 0.1M TRIS hydrochloride pH 8.5, 30% PEG 4000, Vapor diffusion, Sitting drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-01-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3R0N _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 28.900 _reflns.number_obs 28989 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 12.300 _reflns.pdbx_chi_squared 0.996 _reflns.pdbx_redundancy 14.200 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.300 1.320 ? ? ? 0.535 ? ? 0.915 7.300 ? 1411 99.900 1 1 1.320 1.350 ? ? ? 0.494 ? ? 0.899 8.600 ? 1420 100.000 2 1 1.350 1.370 ? ? ? 0.430 ? ? 0.922 10.200 ? 1411 100.000 3 1 1.370 1.400 ? ? ? 0.365 ? ? 0.933 12.600 ? 1409 100.000 4 1 1.400 1.430 ? ? ? 0.339 ? ? 0.952 15.400 ? 1434 100.000 5 1 1.430 1.460 ? ? ? 0.287 ? ? 0.968 15.400 ? 1422 100.000 6 1 1.460 1.500 ? ? ? 0.235 ? ? 1.009 15.500 ? 1427 100.000 7 1 1.500 1.540 ? ? ? 0.195 ? ? 1.015 15.500 ? 1435 100.000 8 1 1.540 1.590 ? ? ? 0.157 ? ? 1.038 15.500 ? 1423 100.000 9 1 1.590 1.640 ? ? ? 0.142 ? ? 1.043 15.600 ? 1437 100.000 10 1 1.640 1.700 ? ? ? 0.118 ? ? 1.007 15.600 ? 1424 100.000 11 1 1.700 1.760 ? ? ? 0.092 ? ? 1.000 15.600 ? 1446 100.000 12 1 1.760 1.840 ? ? ? 0.072 ? ? 0.966 15.600 ? 1442 100.000 13 1 1.840 1.940 ? ? ? 0.054 ? ? 0.922 15.500 ? 1455 100.000 14 1 1.940 2.060 ? ? ? 0.043 ? ? 0.889 15.500 ? 1453 100.000 15 1 2.060 2.220 ? ? ? 0.041 ? ? 0.935 15.500 ? 1463 100.000 16 1 2.220 2.450 ? ? ? 0.048 ? ? 1.341 15.400 ? 1459 100.000 17 1 2.450 2.800 ? ? ? 0.048 ? ? 1.584 15.200 ? 1487 100.000 18 1 2.800 3.530 ? ? ? 0.029 ? ? 0.859 14.600 ? 1507 100.000 19 1 3.530 50.000 ? ? ? 0.023 ? ? 0.590 14.300 ? 1624 99.600 20 1 # _refine.entry_id 3R0N _refine.ls_d_res_high 1.3000 _refine.ls_d_res_low 28.900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.0500 _refine.ls_number_reflns_obs 28078 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY : SYMMETRY VIOLATING CLASH FOUND BETWEEN ONE OF THE ROTAMERS (~ 50% OCCUPANCY) OF TRP-155. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1534 _refine.ls_R_factor_R_work 0.1523 _refine.ls_wR_factor_R_work 0.1519 _refine.ls_R_factor_R_free 0.1733 _refine.ls_wR_factor_R_free 0.1720 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1423 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.2627 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.1600 _refine.aniso_B[2][2] 0.1600 _refine.aniso_B[3][3] -0.3200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9740 _refine.correlation_coeff_Fo_to_Fc_free 0.9720 _refine.overall_SU_R_Cruickshank_DPI 0.0576 _refine.overall_SU_R_free 0.0499 _refine.pdbx_overall_ESU_R_Free 0.0500 _refine.overall_SU_ML 0.0250 _refine.overall_SU_B 1.2330 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 1NEU _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9184 _refine.B_iso_max 93.640 _refine.B_iso_min 7.260 _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error 26.25 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.058 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 980 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 1116 _refine_hist.d_res_high 1.3000 _refine_hist.d_res_low 28.900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1148 0.009 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1588 1.310 1.960 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 156 6.664 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 50 38.698 24.400 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 183 13.047 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 11.320 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 170 0.079 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 928 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 727 1.270 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1199 2.120 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 421 2.757 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 388 4.364 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1148 1.204 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.3000 _refine_ls_shell.d_res_low 1.3340 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 65.0900 _refine_ls_shell.number_reflns_R_work 1279 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2080 _refine_ls_shell.R_factor_R_free 0.2510 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1352 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3R0N _struct.title 'Crystal Structure of the Immunoglobulin variable domain of Nectin-2' _struct.pdbx_descriptor 'Poliovirus receptor-related protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R0N _struct_keywords.text ;Ig-domain, cell-adhesion molecule, Virus entry receptor, Structural Genomics, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC, CELL ADHESION, Atoms-to-Animals: The Immune Function Network, IFN ; _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 46 ? HIS A 49 ? PRO A 76 HIS A 79 5 ? 4 HELX_P HELX_P2 2 GLY A 69 ? GLU A 71 ? GLY A 99 GLU A 101 5 ? 3 HELX_P HELX_P3 3 THR A 101 ? GLU A 105 ? THR A 131 GLU A 135 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 54 A CYS 140 1_555 ? ? ? ? ? ? ? 2.035 ? metalc1 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 192 1_555 ? ? ? ? ? ? ? 1.975 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 177 1_555 ? ? ? ? ? ? ? 2.033 ? metalc3 metalc ? ? A PRO 64 O ? ? ? 1_555 B MG . MG ? ? A PRO 94 A MG 201 1_555 ? ? ? ? ? ? ? 2.082 ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 196 1_555 ? ? ? ? ? ? ? 2.088 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 173 1_555 ? ? ? ? ? ? ? 2.106 ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 174 1_555 ? ? ? ? ? ? ? 2.127 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 27 A . ? LEU 57 A PRO 28 A ? PRO 58 A 1 -8.28 2 LYS 67 A . ? LYS 97 A PRO 68 A ? PRO 98 A 1 -1.77 3 PHE 115 A . ? PHE 145 A PRO 116 A ? PRO 146 A 1 14.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 6 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 5 ? GLN A 7 ? ARG A 35 GLN A 37 A 2 HIS A 25 ? LEU A 27 ? HIS A 55 LEU A 57 B 1 GLU A 11 ? ARG A 13 ? GLU A 41 ARG A 43 B 2 GLY A 118 ? ARG A 127 ? GLY A 148 ARG A 157 B 3 GLY A 106 ? PHE A 115 ? GLY A 136 PHE A 145 B 4 TYR A 34 ? GLN A 41 ? TYR A 64 GLN A 71 B 5 ASN A 51 ? HIS A 56 ? ASN A 81 HIS A 86 B 6 GLY A 60 ? SER A 62 ? GLY A 90 SER A 92 C 1 VAL A 20 ? LEU A 22 ? VAL A 50 LEU A 52 C 2 LEU A 95 ? LEU A 97 ? LEU A 125 LEU A 127 C 3 LEU A 73 ? PHE A 75 ? LEU A 103 PHE A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 7 ? N GLN A 37 O HIS A 25 ? O HIS A 55 B 1 2 N VAL A 12 ? N VAL A 42 O ARG A 127 ? O ARG A 157 B 2 3 O LEU A 126 ? O LEU A 156 N GLY A 106 ? N GLY A 136 B 3 4 O THR A 109 ? O THR A 139 N GLN A 41 ? N GLN A 71 B 4 5 N TRP A 40 ? N TRP A 70 O ALA A 53 ? O ALA A 83 B 5 6 N HIS A 56 ? N HIS A 86 O GLY A 60 ? O GLY A 90 C 1 2 N LEU A 22 ? N LEU A 52 O LEU A 95 ? O LEU A 125 C 2 3 O ALA A 96 ? O ALA A 126 N SER A 74 ? N SER A 104 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PRO A 64 ? PRO A 94 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 173 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 174 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 177 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 192 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 196 . ? 1_555 ? 7 AC2 4 ASP A 3 ? ASP A 33 . ? 1_555 ? 8 AC2 4 SER A 70 ? SER A 100 . ? 6_555 ? 9 AC2 4 GLU A 71 ? GLU A 101 . ? 6_555 ? 10 AC2 4 HOH D . ? HOH A 238 . ? 1_555 ? # _atom_sites.entry_id 3R0N _atom_sites.fract_transf_matrix[1][1] 0.017252 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017252 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014805 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 31 31 MET MET A . n A 1 2 GLN 2 32 32 GLN GLN A . n A 1 3 ASP 3 33 33 ASP ASP A . n A 1 4 VAL 4 34 34 VAL VAL A . n A 1 5 ARG 5 35 35 ARG ARG A . n A 1 6 VAL 6 36 36 VAL VAL A . n A 1 7 GLN 7 37 37 GLN GLN A . n A 1 8 VAL 8 38 38 VAL VAL A . n A 1 9 LEU 9 39 39 LEU LEU A . n A 1 10 PRO 10 40 40 PRO PRO A . n A 1 11 GLU 11 41 41 GLU GLU A . n A 1 12 VAL 12 42 42 VAL VAL A . n A 1 13 ARG 13 43 43 ARG ARG A . n A 1 14 GLY 14 44 44 GLY GLY A . n A 1 15 GLN 15 45 45 GLN GLN A . n A 1 16 LEU 16 46 46 LEU LEU A . n A 1 17 GLY 17 47 47 GLY GLY A . n A 1 18 GLY 18 48 48 GLY GLY A . n A 1 19 THR 19 49 49 THR THR A . n A 1 20 VAL 20 50 50 VAL VAL A . n A 1 21 GLU 21 51 51 GLU GLU A . n A 1 22 LEU 22 52 52 LEU LEU A . n A 1 23 PRO 23 53 53 PRO PRO A . n A 1 24 CYS 24 54 54 CYS CYS A . n A 1 25 HIS 25 55 55 HIS HIS A . n A 1 26 LEU 26 56 56 LEU LEU A . n A 1 27 LEU 27 57 57 LEU LEU A . n A 1 28 PRO 28 58 58 PRO PRO A . n A 1 29 PRO 29 59 59 PRO PRO A . n A 1 30 VAL 30 60 60 VAL VAL A . n A 1 31 PRO 31 61 61 PRO PRO A . n A 1 32 GLY 32 62 62 GLY GLY A . n A 1 33 LEU 33 63 63 LEU LEU A . n A 1 34 TYR 34 64 64 TYR TYR A . n A 1 35 ILE 35 65 65 ILE ILE A . n A 1 36 SER 36 66 66 SER SER A . n A 1 37 LEU 37 67 67 LEU LEU A . n A 1 38 VAL 38 68 68 VAL VAL A . n A 1 39 THR 39 69 69 THR THR A . n A 1 40 TRP 40 70 70 TRP TRP A . n A 1 41 GLN 41 71 71 GLN GLN A . n A 1 42 ARG 42 72 72 ARG ARG A . n A 1 43 PRO 43 73 73 PRO PRO A . n A 1 44 ASP 44 74 74 ASP ASP A . n A 1 45 ALA 45 75 75 ALA ALA A . n A 1 46 PRO 46 76 76 PRO PRO A . n A 1 47 ALA 47 77 77 ALA ALA A . n A 1 48 ASN 48 78 78 ASN ASN A . n A 1 49 HIS 49 79 79 HIS HIS A . n A 1 50 GLN 50 80 80 GLN GLN A . n A 1 51 ASN 51 81 81 ASN ASN A . n A 1 52 VAL 52 82 82 VAL VAL A . n A 1 53 ALA 53 83 83 ALA ALA A . n A 1 54 ALA 54 84 84 ALA ALA A . n A 1 55 PHE 55 85 85 PHE PHE A . n A 1 56 HIS 56 86 86 HIS HIS A . n A 1 57 PRO 57 87 87 PRO PRO A . n A 1 58 LYS 58 88 88 LYS LYS A . n A 1 59 MET 59 89 89 MET MET A . n A 1 60 GLY 60 90 90 GLY GLY A . n A 1 61 PRO 61 91 91 PRO PRO A . n A 1 62 SER 62 92 92 SER SER A . n A 1 63 PHE 63 93 93 PHE PHE A . n A 1 64 PRO 64 94 94 PRO PRO A . n A 1 65 SER 65 95 95 SER SER A . n A 1 66 PRO 66 96 96 PRO PRO A . n A 1 67 LYS 67 97 97 LYS LYS A . n A 1 68 PRO 68 98 98 PRO PRO A . n A 1 69 GLY 69 99 99 GLY GLY A . n A 1 70 SER 70 100 100 SER SER A . n A 1 71 GLU 71 101 101 GLU GLU A . n A 1 72 ARG 72 102 102 ARG ARG A . n A 1 73 LEU 73 103 103 LEU LEU A . n A 1 74 SER 74 104 104 SER SER A . n A 1 75 PHE 75 105 105 PHE PHE A . n A 1 76 VAL 76 106 106 VAL VAL A . n A 1 77 SER 77 107 107 SER SER A . n A 1 78 ALA 78 108 108 ALA ALA A . n A 1 79 LYS 79 109 109 LYS LYS A . n A 1 80 GLN 80 110 110 GLN GLN A . n A 1 81 SER 81 111 111 SER SER A . n A 1 82 THR 82 112 112 THR THR A . n A 1 83 GLY 83 113 113 GLY GLY A . n A 1 84 GLN 84 114 114 GLN GLN A . n A 1 85 ASP 85 115 115 ASP ASP A . n A 1 86 THR 86 116 116 THR THR A . n A 1 87 GLU 87 117 117 GLU GLU A . n A 1 88 ALA 88 118 118 ALA ALA A . n A 1 89 GLU 89 119 119 GLU GLU A . n A 1 90 LEU 90 120 120 LEU LEU A . n A 1 91 GLN 91 121 121 GLN GLN A . n A 1 92 ASP 92 122 122 ASP ASP A . n A 1 93 ALA 93 123 123 ALA ALA A . n A 1 94 THR 94 124 124 THR THR A . n A 1 95 LEU 95 125 125 LEU LEU A . n A 1 96 ALA 96 126 126 ALA ALA A . n A 1 97 LEU 97 127 127 LEU LEU A . n A 1 98 HIS 98 128 128 HIS HIS A . n A 1 99 GLY 99 129 129 GLY GLY A . n A 1 100 LEU 100 130 130 LEU LEU A . n A 1 101 THR 101 131 131 THR THR A . n A 1 102 VAL 102 132 132 VAL VAL A . n A 1 103 GLU 103 133 133 GLU GLU A . n A 1 104 ASP 104 134 134 ASP ASP A . n A 1 105 GLU 105 135 135 GLU GLU A . n A 1 106 GLY 106 136 136 GLY GLY A . n A 1 107 ASN 107 137 137 ASN ASN A . n A 1 108 TYR 108 138 138 TYR TYR A . n A 1 109 THR 109 139 139 THR THR A . n A 1 110 CYS 110 140 140 CYS CYS A . n A 1 111 GLU 111 141 141 GLU GLU A . n A 1 112 PHE 112 142 142 PHE PHE A . n A 1 113 ALA 113 143 143 ALA ALA A . n A 1 114 THR 114 144 144 THR THR A . n A 1 115 PHE 115 145 145 PHE PHE A . n A 1 116 PRO 116 146 146 PRO PRO A . n A 1 117 LYS 117 147 147 LYS LYS A . n A 1 118 GLY 118 148 148 GLY GLY A . n A 1 119 SER 119 149 149 SER SER A . n A 1 120 VAL 120 150 150 VAL VAL A . n A 1 121 ARG 121 151 151 ARG ARG A . n A 1 122 GLY 122 152 152 GLY GLY A . n A 1 123 MET 123 153 153 MET MET A . n A 1 124 THR 124 154 154 THR THR A . n A 1 125 TRP 125 155 155 TRP TRP A . n A 1 126 LEU 126 156 156 LEU LEU A . n A 1 127 ARG 127 157 157 ARG ARG A . n A 1 128 VAL 128 158 158 VAL VAL A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'New York Structural Genomics Research Consortium' NYSGRC 2 PSI:Biology 'Atoms-to-Animals: The Immune Function Network' IFN # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2260 ? 1 MORE -36 ? 1 'SSA (A^2)' 12400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 67.5440000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id TRP _pdbx_struct_special_symmetry.auth_seq_id 155 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id A _pdbx_struct_special_symmetry.label_comp_id TRP _pdbx_struct_special_symmetry.label_seq_id 125 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 192 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 177 ? 1_555 85.9 ? 2 O ? D HOH . ? A HOH 192 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? A PRO 64 ? A PRO 94 ? 1_555 93.7 ? 3 O ? D HOH . ? A HOH 177 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? A PRO 64 ? A PRO 94 ? 1_555 97.5 ? 4 O ? D HOH . ? A HOH 192 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 196 ? 1_555 90.1 ? 5 O ? D HOH . ? A HOH 177 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 196 ? 1_555 173.8 ? 6 O ? A PRO 64 ? A PRO 94 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 196 ? 1_555 87.5 ? 7 O ? D HOH . ? A HOH 192 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 173 ? 1_555 88.4 ? 8 O ? D HOH . ? A HOH 177 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 173 ? 1_555 88.5 ? 9 O ? A PRO 64 ? A PRO 94 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 173 ? 1_555 173.7 ? 10 O ? D HOH . ? A HOH 196 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 173 ? 1_555 86.6 ? 11 O ? D HOH . ? A HOH 192 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 174 ? 1_555 172.4 ? 12 O ? D HOH . ? A HOH 177 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 174 ? 1_555 88.4 ? 13 O ? A PRO 64 ? A PRO 94 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 174 ? 1_555 82.1 ? 14 O ? D HOH . ? A HOH 196 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 174 ? 1_555 96.0 ? 15 O ? D HOH . ? A HOH 173 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 174 ? 1_555 96.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-09-05 4 'Structure model' 1 3 2012-09-12 5 'Structure model' 1 4 2012-10-03 6 'Structure model' 1 5 2012-11-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Data collection' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 94 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -81.46 _pdbx_validate_torsion.psi 33.15 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 3 CL 1 203 203 CL CL A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 3 3 HOH HOH A . D 4 HOH 3 4 4 HOH HOH A . D 4 HOH 4 5 5 HOH HOH A . D 4 HOH 5 6 6 HOH HOH A . D 4 HOH 6 7 7 HOH HOH A . D 4 HOH 7 8 8 HOH HOH A . D 4 HOH 8 9 9 HOH HOH A . D 4 HOH 9 10 10 HOH HOH A . D 4 HOH 10 12 12 HOH HOH A . D 4 HOH 11 13 13 HOH HOH A . D 4 HOH 12 14 14 HOH HOH A . D 4 HOH 13 17 17 HOH HOH A . D 4 HOH 14 18 18 HOH HOH A . D 4 HOH 15 21 21 HOH HOH A . D 4 HOH 16 23 23 HOH HOH A . D 4 HOH 17 26 26 HOH HOH A . D 4 HOH 18 27 27 HOH HOH A . D 4 HOH 19 28 28 HOH HOH A . D 4 HOH 20 29 29 HOH HOH A . D 4 HOH 21 30 30 HOH HOH A . D 4 HOH 22 159 159 HOH HOH A . D 4 HOH 23 160 160 HOH HOH A . D 4 HOH 24 161 32 HOH HOH A . D 4 HOH 25 162 162 HOH HOH A . D 4 HOH 26 163 163 HOH HOH A . D 4 HOH 27 164 164 HOH HOH A . D 4 HOH 28 165 165 HOH HOH A . D 4 HOH 29 166 166 HOH HOH A . D 4 HOH 30 167 167 HOH HOH A . D 4 HOH 31 168 168 HOH HOH A . D 4 HOH 32 169 169 HOH HOH A . D 4 HOH 33 170 170 HOH HOH A . D 4 HOH 34 171 171 HOH HOH A . D 4 HOH 35 172 34 HOH HOH A . D 4 HOH 36 173 35 HOH HOH A . D 4 HOH 37 174 36 HOH HOH A . D 4 HOH 38 175 37 HOH HOH A . D 4 HOH 39 176 40 HOH HOH A . D 4 HOH 40 177 41 HOH HOH A . D 4 HOH 41 178 43 HOH HOH A . D 4 HOH 42 179 44 HOH HOH A . D 4 HOH 43 180 45 HOH HOH A . D 4 HOH 44 181 47 HOH HOH A . D 4 HOH 45 182 48 HOH HOH A . D 4 HOH 46 183 49 HOH HOH A . D 4 HOH 47 184 50 HOH HOH A . D 4 HOH 48 185 51 HOH HOH A . D 4 HOH 49 186 52 HOH HOH A . D 4 HOH 50 187 53 HOH HOH A . D 4 HOH 51 188 54 HOH HOH A . D 4 HOH 52 189 55 HOH HOH A . D 4 HOH 53 190 56 HOH HOH A . D 4 HOH 54 191 57 HOH HOH A . D 4 HOH 55 192 58 HOH HOH A . D 4 HOH 56 193 59 HOH HOH A . D 4 HOH 57 194 60 HOH HOH A . D 4 HOH 58 195 61 HOH HOH A . D 4 HOH 59 196 62 HOH HOH A . D 4 HOH 60 197 63 HOH HOH A . D 4 HOH 61 198 64 HOH HOH A . D 4 HOH 62 199 66 HOH HOH A . D 4 HOH 63 200 67 HOH HOH A . D 4 HOH 64 202 69 HOH HOH A . D 4 HOH 65 204 70 HOH HOH A . D 4 HOH 66 205 71 HOH HOH A . D 4 HOH 67 206 72 HOH HOH A . D 4 HOH 68 207 73 HOH HOH A . D 4 HOH 69 208 75 HOH HOH A . D 4 HOH 70 209 76 HOH HOH A . D 4 HOH 71 210 77 HOH HOH A . D 4 HOH 72 211 79 HOH HOH A . D 4 HOH 73 212 80 HOH HOH A . D 4 HOH 74 213 82 HOH HOH A . D 4 HOH 75 214 83 HOH HOH A . D 4 HOH 76 215 84 HOH HOH A . D 4 HOH 77 216 85 HOH HOH A . D 4 HOH 78 217 87 HOH HOH A . D 4 HOH 79 218 88 HOH HOH A . D 4 HOH 80 219 89 HOH HOH A . D 4 HOH 81 220 90 HOH HOH A . D 4 HOH 82 221 91 HOH HOH A . D 4 HOH 83 222 92 HOH HOH A . D 4 HOH 84 223 94 HOH HOH A . D 4 HOH 85 224 95 HOH HOH A . D 4 HOH 86 225 96 HOH HOH A . D 4 HOH 87 226 97 HOH HOH A . D 4 HOH 88 227 98 HOH HOH A . D 4 HOH 89 228 99 HOH HOH A . D 4 HOH 90 229 100 HOH HOH A . D 4 HOH 91 230 101 HOH HOH A . D 4 HOH 92 231 102 HOH HOH A . D 4 HOH 93 232 103 HOH HOH A . D 4 HOH 94 233 104 HOH HOH A . D 4 HOH 95 234 106 HOH HOH A . D 4 HOH 96 235 108 HOH HOH A . D 4 HOH 97 236 110 HOH HOH A . D 4 HOH 98 237 111 HOH HOH A . D 4 HOH 99 238 112 HOH HOH A . D 4 HOH 100 239 113 HOH HOH A . D 4 HOH 101 240 114 HOH HOH A . D 4 HOH 102 241 115 HOH HOH A . D 4 HOH 103 242 116 HOH HOH A . D 4 HOH 104 243 117 HOH HOH A . D 4 HOH 105 244 118 HOH HOH A . D 4 HOH 106 245 119 HOH HOH A . D 4 HOH 107 246 120 HOH HOH A . D 4 HOH 108 247 121 HOH HOH A . D 4 HOH 109 248 122 HOH HOH A . D 4 HOH 110 249 123 HOH HOH A . D 4 HOH 111 250 126 HOH HOH A . D 4 HOH 112 251 127 HOH HOH A . D 4 HOH 113 252 128 HOH HOH A . D 4 HOH 114 253 129 HOH HOH A . D 4 HOH 115 254 132 HOH HOH A . D 4 HOH 116 255 133 HOH HOH A . D 4 HOH 117 256 134 HOH HOH A . D 4 HOH 118 257 135 HOH HOH A . D 4 HOH 119 258 136 HOH HOH A . D 4 HOH 120 259 137 HOH HOH A . D 4 HOH 121 260 138 HOH HOH A . D 4 HOH 122 261 139 HOH HOH A . D 4 HOH 123 262 141 HOH HOH A . D 4 HOH 124 263 142 HOH HOH A . D 4 HOH 125 264 143 HOH HOH A . D 4 HOH 126 265 147 HOH HOH A . D 4 HOH 127 266 148 HOH HOH A . D 4 HOH 128 267 149 HOH HOH A . D 4 HOH 129 268 150 HOH HOH A . D 4 HOH 130 269 153 HOH HOH A . D 4 HOH 131 270 154 HOH HOH A . D 4 HOH 132 271 156 HOH HOH A . D 4 HOH 133 272 157 HOH HOH A . D 4 HOH 134 273 158 HOH HOH A . #