HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-MAR-11 3R0T TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN KINASE CK2 ALPHA SUBUNIT IN COMPLEX TITLE 2 WITH THE INHIBITOR CX-5279 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-337; COMPND 5 SYNONYM: CK II ALPHA; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK2A1, CK2A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS KINASE, CK2-INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.BATTISTUTTA,E.PAPINUTTO,G.LOLLI,F.PIERRE,M.HADDACH,D.M.RYCKMAN REVDAT 3 13-SEP-23 3R0T 1 REMARK REVDAT 2 29-OCT-14 3R0T 1 AUTHOR REVDAT 1 07-DEC-11 3R0T 0 JRNL AUTH R.BATTISTUTTA,G.COZZA,F.PIERRE,E.PAPINUTTO,G.LOLLI,S.SARNO, JRNL AUTH 2 S.E.O'BRIEN,A.SIDDIQUI-JAIN,M.HADDACH,K.ANDERES,D.M.RYCKMAN, JRNL AUTH 3 F.MEGGIO,L.A.PINNA JRNL TITL UNPRECEDENTED SELECTIVITY AND STRUCTURAL DETERMINANTS OF A JRNL TITL 2 NEW CLASS OF PROTEIN KINASE CK2 INHIBITORS IN CLINICAL JRNL TITL 3 TRIALS FOR THE TREATMENT OF CANCER. JRNL REF BIOCHEMISTRY V. 50 8478 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21870818 JRNL DOI 10.1021/BI2008382 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.COZZA,M.MAZZORANA,E.PAPINUTTO,J.BAIN,M.ELLIOTT,G.DI MAIRA, REMARK 1 AUTH 2 A.GIANONCELLI,M.A.PAGANO,S.SARNO,M.RUZZENE,R.BATTISTUTTA, REMARK 1 AUTH 3 F.MEGGIO,S.MORO,G.ZAGOTTO,L.A.PINNA REMARK 1 TITL QUINALIZARIN AS A POTENT, SELECTIVE AND CELL-PERMEABLE REMARK 1 TITL 2 INHIBITOR OF PROTEIN KINASE CK2. REMARK 1 REF BIOCHEM.J. V. 421 387 2009 REMARK 1 REFN ISSN 0264-6021 REMARK 1 PMID 19432557 REMARK 1 DOI 10.1042/BJ20090069 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 28526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1842 - 3.7690 0.99 3103 165 0.1437 0.1687 REMARK 3 2 3.7690 - 2.9920 0.99 3026 162 0.1456 0.1894 REMARK 3 3 2.9920 - 2.6140 1.00 3033 153 0.1662 0.2429 REMARK 3 4 2.6140 - 2.3750 0.99 2975 179 0.1725 0.2541 REMARK 3 5 2.3750 - 2.2048 0.99 3009 152 0.1654 0.2217 REMARK 3 6 2.2048 - 2.0749 0.97 2927 145 0.1638 0.2257 REMARK 3 7 2.0749 - 1.9710 0.92 2782 140 0.1662 0.2278 REMARK 3 8 1.9710 - 1.8852 0.85 2580 129 0.1825 0.2350 REMARK 3 9 1.8852 - 1.8126 0.71 2123 113 0.2041 0.2279 REMARK 3 10 1.8126 - 1.7500 0.51 1548 82 0.2385 0.3005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 38.79 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.30980 REMARK 3 B22 (A**2) : 3.47990 REMARK 3 B33 (A**2) : 2.82990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.16510 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2946 REMARK 3 ANGLE : 1.036 3976 REMARK 3 CHIRALITY : 0.075 406 REMARK 3 PLANARITY : 0.005 501 REMARK 3 DIHEDRAL : 13.608 1109 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:13) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4641 -55.6146 14.6268 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1553 REMARK 3 T33: 0.2001 T12: -0.0541 REMARK 3 T13: 0.0353 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 0.0564 L22: 0.0078 REMARK 3 L33: 0.0150 L12: 0.0243 REMARK 3 L13: 0.0083 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.0526 S13: -0.0471 REMARK 3 S21: -0.0062 S22: 0.0860 S23: -0.0703 REMARK 3 S31: -0.0106 S32: -0.0466 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 14:32) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9593 -56.5547 8.8193 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.1470 REMARK 3 T33: 0.3446 T12: 0.0235 REMARK 3 T13: 0.0536 T23: -0.0858 REMARK 3 L TENSOR REMARK 3 L11: 0.0139 L22: 0.0999 REMARK 3 L33: 0.0686 L12: -0.0127 REMARK 3 L13: 0.0311 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.2488 S12: 0.1931 S13: -0.1999 REMARK 3 S21: -0.0211 S22: 0.0957 S23: -0.1243 REMARK 3 S31: 0.1808 S32: 0.1616 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 33:51) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0192 -34.0681 15.6464 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.2292 REMARK 3 T33: 0.2319 T12: -0.0256 REMARK 3 T13: 0.0088 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 0.0751 L22: 0.1045 REMARK 3 L33: 0.1087 L12: -0.0117 REMARK 3 L13: 0.0879 L23: 0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: 0.0348 S13: -0.0756 REMARK 3 S21: -0.0804 S22: -0.1905 S23: 0.2135 REMARK 3 S31: -0.0276 S32: 0.0701 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 52:71) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1118 -31.5914 11.3104 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.2072 REMARK 3 T33: 0.1295 T12: -0.0180 REMARK 3 T13: -0.0353 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.0728 L22: 0.0127 REMARK 3 L33: 0.0385 L12: -0.0320 REMARK 3 L13: -0.0050 L23: 0.0035 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: 0.1432 S13: 0.2397 REMARK 3 S21: -0.1383 S22: 0.0626 S23: 0.0589 REMARK 3 S31: 0.0279 S32: -0.0798 S33: 0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 72:102) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7116 -44.4796 11.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1772 REMARK 3 T33: 0.1597 T12: 0.0066 REMARK 3 T13: -0.0140 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.1791 L22: 0.2326 REMARK 3 L33: 0.1170 L12: 0.1641 REMARK 3 L13: 0.0026 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.1009 S13: -0.1852 REMARK 3 S21: 0.0915 S22: 0.0280 S23: -0.1044 REMARK 3 S31: 0.0618 S32: 0.0149 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 103:139) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9998 -29.1819 10.8388 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.1502 REMARK 3 T33: 0.1780 T12: 0.0178 REMARK 3 T13: -0.0068 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.0500 L22: 0.0814 REMARK 3 L33: 0.2482 L12: -0.0064 REMARK 3 L13: -0.0006 L23: -0.1427 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0020 S13: 0.2493 REMARK 3 S21: 0.0802 S22: 0.0149 S23: -0.1391 REMARK 3 S31: -0.0785 S32: -0.0440 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 140:224) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9353 -41.3947 15.1453 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.0745 REMARK 3 T33: 0.1054 T12: -0.0020 REMARK 3 T13: -0.0027 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.5752 L22: 0.4700 REMARK 3 L33: 0.2096 L12: 0.0653 REMARK 3 L13: -0.1833 L23: -0.2846 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.1121 S13: -0.0482 REMARK 3 S21: 0.0253 S22: 0.0386 S23: -0.1052 REMARK 3 S31: 0.0006 S32: -0.0174 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 225:247) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7560 -31.9870 26.3692 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.0805 REMARK 3 T33: 0.1055 T12: 0.0151 REMARK 3 T13: -0.0151 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1356 L22: 0.0378 REMARK 3 L33: 0.0555 L12: -0.0798 REMARK 3 L13: 0.0674 L23: -0.0466 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.0027 S13: 0.1597 REMARK 3 S21: 0.1155 S22: 0.0023 S23: -0.1846 REMARK 3 S31: -0.0997 S32: -0.0487 S33: -0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 248:329) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9085 -37.9654 18.3039 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1009 REMARK 3 T33: 0.0675 T12: -0.0082 REMARK 3 T13: -0.0036 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4401 L22: 0.2274 REMARK 3 L33: 0.3372 L12: -0.1399 REMARK 3 L13: -0.2005 L23: -0.0276 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.1025 S13: -0.0126 REMARK 3 S21: 0.0164 S22: 0.0378 S23: -0.0172 REMARK 3 S31: 0.0227 S32: -0.1320 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 4000, 0.2M LI2SO4, 0.1M TRIS REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.09200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 330 REMARK 465 GLN A 331 REMARK 465 ALA A 332 REMARK 465 ARG A 333 REMARK 465 MET A 334 REMARK 465 GLY A 335 REMARK 465 SER A 336 REMARK 465 SER A 337 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 66 CA CB CG1 CG2 REMARK 480 MET A 137 CA CB CG SD CE REMARK 480 MET A 150 CA CB CG SD CE REMARK 480 SER A 194 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 72 7.31 -63.10 REMARK 500 LYS A 74 171.94 77.25 REMARK 500 LYS A 75 -94.80 -122.48 REMARK 500 ASP A 156 41.13 -151.35 REMARK 500 ASP A 175 76.09 53.05 REMARK 500 ALA A 193 155.33 68.87 REMARK 500 MET A 208 54.56 -92.13 REMARK 500 HIS A 234 73.11 -103.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FU9 A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 346 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 347 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 348 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 349 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 352 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PE1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PROTEIN KINASE CK2 ALPHA SUBUNIT IN REMARK 900 COMPLEX WITH THE INHIBITOR CX-4945 REMARK 900 RELATED ID: 3PE2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PROTEIN KINASE CK2 ALPHA SUBUNIT IN REMARK 900 COMPLEX WITH THE INHIBITOR CX-5011 DBREF 3R0T A 1 337 UNP P68400 CSK21_HUMAN 1 337 SEQRES 1 A 337 MET SER GLY PRO VAL PRO SER ARG ALA ARG VAL TYR THR SEQRES 2 A 337 ASP VAL ASN THR HIS ARG PRO ARG GLU TYR TRP ASP TYR SEQRES 3 A 337 GLU SER HIS VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR SEQRES 4 A 337 GLN LEU VAL ARG LYS LEU GLY ARG GLY LYS TYR SER GLU SEQRES 5 A 337 VAL PHE GLU ALA ILE ASN ILE THR ASN ASN GLU LYS VAL SEQRES 6 A 337 VAL VAL LYS ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE SEQRES 7 A 337 LYS ARG GLU ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY SEQRES 8 A 337 PRO ASN ILE ILE THR LEU ALA ASP ILE VAL LYS ASP PRO SEQRES 9 A 337 VAL SER ARG THR PRO ALA LEU VAL PHE GLU HIS VAL ASN SEQRES 10 A 337 ASN THR ASP PHE LYS GLN LEU TYR GLN THR LEU THR ASP SEQRES 11 A 337 TYR ASP ILE ARG PHE TYR MET TYR GLU ILE LEU LYS ALA SEQRES 12 A 337 LEU ASP TYR CYS HIS SER MET GLY ILE MET HIS ARG ASP SEQRES 13 A 337 VAL LYS PRO HIS ASN VAL MET ILE ASP HIS GLU HIS ARG SEQRES 14 A 337 LYS LEU ARG LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR SEQRES 15 A 337 HIS PRO GLY GLN GLU TYR ASN VAL ARG VAL ALA SER ARG SEQRES 16 A 337 TYR PHE LYS GLY PRO GLU LEU LEU VAL ASP TYR GLN MET SEQRES 17 A 337 TYR ASP TYR SER LEU ASP MET TRP SER LEU GLY CYS MET SEQRES 18 A 337 LEU ALA SER MET ILE PHE ARG LYS GLU PRO PHE PHE HIS SEQRES 19 A 337 GLY HIS ASP ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS SEQRES 20 A 337 VAL LEU GLY THR GLU ASP LEU TYR ASP TYR ILE ASP LYS SEQRES 21 A 337 TYR ASN ILE GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU SEQRES 22 A 337 GLY ARG HIS SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SEQRES 23 A 337 SER GLU ASN GLN HIS LEU VAL SER PRO GLU ALA LEU ASP SEQRES 24 A 337 PHE LEU ASP LYS LEU LEU ARG TYR ASP HIS GLN SER ARG SEQRES 25 A 337 LEU THR ALA ARG GLU ALA MET GLU HIS PRO TYR PHE TYR SEQRES 26 A 337 THR VAL VAL LYS ASP GLN ALA ARG MET GLY SER SER HET FU9 A 338 32 HET SO4 A 339 5 HET SO4 A 340 5 HET SO4 A 341 5 HET SO4 A 342 5 HET PEG A 343 7 HET EDO A 344 4 HET EDO A 345 4 HET EDO A 346 4 HET EDO A 347 4 HET EDO A 348 4 HET EDO A 349 4 HET EDO A 350 4 HET EDO A 351 4 HET EDO A 352 4 HETNAM FU9 3-(CYCLOPROPYLAMINO)-5-{[3-(TRIFLUOROMETHYL) HETNAM 2 FU9 PHENYL]AMINO}PYRIMIDO[4,5-C]QUINOLINE-8-CARBOXYLIC HETNAM 3 FU9 ACID HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN FU9 CX-5279 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FU9 C22 H16 F3 N5 O2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 PEG C4 H10 O3 FORMUL 8 EDO 9(C2 H6 O2) FORMUL 17 HOH *334(H2 O) HELIX 1 1 PRO A 20 ASP A 25 1 6 HELIX 2 2 TYR A 26 HIS A 29 5 4 HELIX 3 3 ASN A 35 ASP A 37 5 3 HELIX 4 4 LYS A 76 ARG A 89 1 14 HELIX 5 5 ASP A 120 TYR A 125 1 6 HELIX 6 6 THR A 129 MET A 150 1 22 HELIX 7 7 LYS A 158 HIS A 160 5 3 HELIX 8 8 ASP A 175 ALA A 179 5 5 HELIX 9 9 SER A 194 LYS A 198 5 5 HELIX 10 10 GLY A 199 VAL A 204 1 6 HELIX 11 11 TYR A 211 ARG A 228 1 18 HELIX 12 12 ASP A 237 GLY A 250 1 14 HELIX 13 13 GLY A 250 TYR A 261 1 12 HELIX 14 14 ASP A 266 ILE A 272 5 7 HELIX 15 15 ARG A 280 VAL A 285 5 6 HELIX 16 16 ASN A 289 VAL A 293 5 5 HELIX 17 17 SER A 294 LEU A 305 1 12 HELIX 18 18 ASP A 308 ARG A 312 5 5 HELIX 19 19 THR A 314 GLU A 320 1 7 HELIX 20 20 HIS A 321 TYR A 325 5 5 SHEET 1 A 5 TYR A 39 ARG A 47 0 SHEET 2 A 5 SER A 51 ASN A 58 -1 O VAL A 53 N LEU A 45 SHEET 3 A 5 LYS A 64 LEU A 70 -1 O VAL A 65 N ALA A 56 SHEET 4 A 5 THR A 108 GLU A 114 -1 O LEU A 111 N LYS A 68 SHEET 5 A 5 LEU A 97 ASP A 103 -1 N VAL A 101 O ALA A 110 SHEET 1 B 2 ILE A 152 MET A 153 0 SHEET 2 B 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 C 2 VAL A 162 ASP A 165 0 SHEET 2 C 2 LYS A 170 LEU A 173 -1 O LYS A 170 N ASP A 165 CISPEP 1 GLU A 230 PRO A 231 0 1.13 SITE 1 AC1 20 LEU A 45 GLY A 46 ARG A 47 VAL A 53 SITE 2 AC1 20 VAL A 66 LYS A 68 PHE A 113 GLU A 114 SITE 3 AC1 20 HIS A 115 VAL A 116 ASN A 118 MET A 163 SITE 4 AC1 20 ILE A 174 ASP A 175 EDO A 345 EDO A 351 SITE 5 AC1 20 HOH A 370 HOH A 381 HOH A 616 HOH A 636 SITE 1 AC2 6 ARG A 80 ARG A 155 ASN A 189 VAL A 192 SITE 2 AC2 6 HOH A 369 HOH A 677 SITE 1 AC3 4 ARG A 191 LYS A 198 ASN A 238 PEG A 343 SITE 1 AC4 8 ASP A 253 ARG A 278 ARG A 306 TYR A 307 SITE 2 AC4 8 ASP A 308 HOH A 397 HOH A 442 HOH A 465 SITE 1 AC5 5 LYS A 170 ARG A 172 HOH A 428 HOH A 463 SITE 2 AC5 5 HOH A 649 SITE 1 AC6 6 SER A 194 ARG A 195 TYR A 196 SO4 A 340 SITE 2 AC6 6 HOH A 433 HOH A 619 SITE 1 AC7 6 GLN A 36 TYR A 39 VAL A 101 ASP A 103 SITE 2 AC7 6 PRO A 104 ARG A 280 SITE 1 AC8 6 ASN A 118 ASP A 120 HIS A 160 FU9 A 338 SITE 2 AC8 6 EDO A 348 EDO A 351 SITE 1 AC9 4 ASP A 37 PRO A 295 HIS A 321 HOH A 620 SITE 1 BC1 5 PHE A 232 HOH A 372 HOH A 573 HOH A 621 SITE 2 BC1 5 HOH A 668 SITE 1 BC2 9 ASN A 118 THR A 119 ASP A 120 PHE A 121 SITE 2 BC2 9 PRO A 159 VAL A 162 MET A 163 ILE A 164 SITE 3 BC2 9 EDO A 345 SITE 1 BC3 6 LYS A 158 HIS A 160 SER A 194 EDO A 350 SITE 2 BC3 6 HOH A 618 HOH A 619 SITE 1 BC4 5 PRO A 159 PHE A 197 GLU A 230 EDO A 349 SITE 2 BC4 5 HOH A 618 SITE 1 BC5 5 ASN A 118 FU9 A 338 EDO A 345 HOH A 455 SITE 2 BC5 5 HOH A 575 SITE 1 BC6 7 PRO A 104 ARG A 278 LYS A 279 ASP A 302 SITE 2 BC6 7 HOH A 531 HOH A 642 HOH A 679 CRYST1 58.352 46.184 63.300 90.00 111.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017137 0.000000 0.006753 0.00000 SCALE2 0.000000 0.021653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016980 0.00000