data_3R1E # _entry.id 3R1E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R1E pdb_00003r1e 10.2210/pdb3r1e/pdb NDB NA1019 ? ? RCSB RCSB064367 ? ? WWPDB D_1000064367 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-09-14 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' diffrn_source 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.value' 8 5 'Structure model' '_struct_conn.pdbx_dist_value' 9 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 11 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3R1E _pdbx_database_status.recvd_initial_deposition_date 2011-03-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3R1C . unspecified PDB 3R1D . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kiliszek, A.' 1 'Kierzek, R.' 2 'Krzyzosiak, W.J.' 3 'Rypniewski, W.' 4 # _citation.id primary _citation.title 'Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 7308 _citation.page_last 7315 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21596781 _citation.pdbx_database_id_DOI 10.1093/nar/gkr368 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Kierzek, R.' 2 ? primary 'Krzyzosiak, W.J.' 3 ? primary 'Rypniewski, W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*C)-3') ; 2675.513 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? 5 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GC(GRB)GCGGC' _entity_poly.pdbx_seq_one_letter_code_can GCXGCGGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'CALCIUM ION' CA 4 'BROMIDE ION' BR 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 GRB n 1 4 G n 1 5 C n 1 6 G n 1 7 G n 1 8 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence is found in human mRNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 GRB 'RNA linking' n ;8-bromoguanosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 Br N5 O8 P' 442.117 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 GRB 3 3 3 GRB GRB A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 GRB 3 3 3 GRB GRB B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 G 6 6 6 G G B . n B 1 7 G 7 7 7 G G B . n B 1 8 C 8 8 8 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 9 1 GOL GOL A . D 3 CA 1 10 1 CA CA A . E 4 BR 1 11 1 BR BR A . F 3 CA 1 9 2 CA CA B . G 4 BR 1 10 1 BR BR B . H 5 HOH 1 12 7 HOH HOH A . H 5 HOH 2 13 9 HOH HOH A . H 5 HOH 3 14 14 HOH HOH A . H 5 HOH 4 15 15 HOH HOH A . H 5 HOH 5 19 19 HOH HOH A . H 5 HOH 6 21 21 HOH HOH A . H 5 HOH 7 23 23 HOH HOH A . H 5 HOH 8 24 24 HOH HOH A . H 5 HOH 9 26 26 HOH HOH A . H 5 HOH 10 33 33 HOH HOH A . H 5 HOH 11 34 34 HOH HOH A . H 5 HOH 12 38 38 HOH HOH A . H 5 HOH 13 39 39 HOH HOH A . H 5 HOH 14 40 40 HOH HOH A . H 5 HOH 15 41 41 HOH HOH A . H 5 HOH 16 43 43 HOH HOH A . H 5 HOH 17 44 44 HOH HOH A . H 5 HOH 18 46 46 HOH HOH A . H 5 HOH 19 47 47 HOH HOH A . H 5 HOH 20 49 49 HOH HOH A . H 5 HOH 21 51 51 HOH HOH A . H 5 HOH 22 53 53 HOH HOH A . H 5 HOH 23 55 55 HOH HOH A . H 5 HOH 24 56 56 HOH HOH A . H 5 HOH 25 57 57 HOH HOH A . H 5 HOH 26 59 59 HOH HOH A . H 5 HOH 27 61 61 HOH HOH A . H 5 HOH 28 63 63 HOH HOH A . H 5 HOH 29 64 64 HOH HOH A . H 5 HOH 30 65 65 HOH HOH A . H 5 HOH 31 67 67 HOH HOH A . H 5 HOH 32 68 68 HOH HOH A . H 5 HOH 33 70 70 HOH HOH A . H 5 HOH 34 71 71 HOH HOH A . H 5 HOH 35 72 72 HOH HOH A . H 5 HOH 36 73 73 HOH HOH A . H 5 HOH 37 74 74 HOH HOH A . H 5 HOH 38 75 75 HOH HOH A . H 5 HOH 39 76 76 HOH HOH A . H 5 HOH 40 80 80 HOH HOH A . H 5 HOH 41 86 86 HOH HOH A . H 5 HOH 42 89 89 HOH HOH A . H 5 HOH 43 91 91 HOH HOH A . H 5 HOH 44 93 93 HOH HOH A . H 5 HOH 45 102 102 HOH HOH A . H 5 HOH 46 107 107 HOH HOH A . H 5 HOH 47 109 109 HOH HOH A . H 5 HOH 48 114 114 HOH HOH A . H 5 HOH 49 115 115 HOH HOH A . H 5 HOH 50 117 117 HOH HOH A . H 5 HOH 51 123 123 HOH HOH A . H 5 HOH 52 125 125 HOH HOH A . H 5 HOH 53 126 126 HOH HOH A . I 5 HOH 1 11 11 HOH HOH B . I 5 HOH 2 12 12 HOH HOH B . I 5 HOH 3 13 13 HOH HOH B . I 5 HOH 4 14 3 HOH HOH B . I 5 HOH 5 15 4 HOH HOH B . I 5 HOH 6 16 16 HOH HOH B . I 5 HOH 7 17 17 HOH HOH B . I 5 HOH 8 18 18 HOH HOH B . I 5 HOH 9 19 6 HOH HOH B . I 5 HOH 10 20 20 HOH HOH B . I 5 HOH 11 21 8 HOH HOH B . I 5 HOH 12 22 22 HOH HOH B . I 5 HOH 13 23 10 HOH HOH B . I 5 HOH 14 24 5 HOH HOH B . I 5 HOH 15 25 25 HOH HOH B . I 5 HOH 16 27 27 HOH HOH B . I 5 HOH 17 28 28 HOH HOH B . I 5 HOH 18 29 29 HOH HOH B . I 5 HOH 19 30 30 HOH HOH B . I 5 HOH 20 31 31 HOH HOH B . I 5 HOH 21 32 32 HOH HOH B . I 5 HOH 22 35 35 HOH HOH B . I 5 HOH 23 36 36 HOH HOH B . I 5 HOH 24 37 37 HOH HOH B . I 5 HOH 25 42 42 HOH HOH B . I 5 HOH 26 45 45 HOH HOH B . I 5 HOH 27 48 48 HOH HOH B . I 5 HOH 28 50 50 HOH HOH B . I 5 HOH 29 52 52 HOH HOH B . I 5 HOH 30 54 54 HOH HOH B . I 5 HOH 31 58 58 HOH HOH B . I 5 HOH 32 60 60 HOH HOH B . I 5 HOH 33 62 62 HOH HOH B . I 5 HOH 34 66 66 HOH HOH B . I 5 HOH 35 69 69 HOH HOH B . I 5 HOH 36 77 77 HOH HOH B . I 5 HOH 37 78 78 HOH HOH B . I 5 HOH 38 82 82 HOH HOH B . I 5 HOH 39 83 83 HOH HOH B . I 5 HOH 40 84 84 HOH HOH B . I 5 HOH 41 87 87 HOH HOH B . I 5 HOH 42 88 88 HOH HOH B . I 5 HOH 43 92 92 HOH HOH B . I 5 HOH 44 95 95 HOH HOH B . I 5 HOH 45 97 97 HOH HOH B . I 5 HOH 46 98 98 HOH HOH B . I 5 HOH 47 100 100 HOH HOH B . I 5 HOH 48 101 101 HOH HOH B . I 5 HOH 49 110 110 HOH HOH B . I 5 HOH 50 111 111 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 SHELXS phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3R1E _cell.length_a 50.666 _cell.length_b 22.538 _cell.length_c 44.183 _cell.angle_alpha 90.00 _cell.angle_beta 117.82 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3R1E _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3R1E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 41.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '10 mM CaCl2, 0.2 M NH4Cl, Tris-HCl, 30% w/v PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8126 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8126 # _reflns.entry_id 3R1E _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 0.97 _reflns.number_obs 24974 _reflns.number_all 24974 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.132 _reflns.pdbx_netI_over_sigmaI 9 _reflns.B_iso_Wilson_estimate 7.8 _reflns.pdbx_redundancy 5.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 0.97 _reflns_shell.d_res_low 0.99 _reflns_shell.percent_possible_all 93.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.934 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1189 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3R1E _refine.ls_number_reflns_obs 24947 _refine.ls_number_reflns_all 24947 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.41 _refine.ls_d_res_high 0.972 _refine.ls_percent_reflns_obs 95.04 _refine.ls_R_factor_obs 0.13664 _refine.ls_R_factor_all 0.13664 _refine.ls_R_factor_R_work 0.13664 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 12.733 _refine.aniso_B[1][1] -0.17 _refine.aniso_B[2][2] 0.19 _refine.aniso_B[3][3] -0.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.05 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'non selected' _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.011 _refine.overall_SU_B 0.435 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 346 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 459 _refine_hist.d_res_high 0.972 _refine_hist.d_res_low 16.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.011 0.021 ? 419 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.746 3.000 ? 654 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.096 0.200 ? 84 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.031 0.020 ? 188 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 1.858 3.000 ? 419 ? 'X-RAY DIFFRACTION' r_scangle_it 2.406 4.500 ? 654 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.414 3.000 ? 419 ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 0.972 _refine_ls_shell.d_res_low 0.997 _refine_ls_shell.number_reflns_R_work 1648 _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.percent_reflns_obs 85.52 _refine_ls_shell.R_factor_R_free 0 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3R1E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3R1E _struct.title 'Crystal structure of GC(8BrG)GCGGC duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R1E _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'CGG repeats, fragile X mental retardation, 8-bromoguanosine, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3R1E _struct_ref.pdbx_db_accession 3R1E _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GCXGCGGC _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3R1E A 1 ? 8 ? 3R1E 1 ? 8 ? 1 8 2 1 3R1E B 1 ? 8 ? 3R1E 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 790 ? 1 MORE -5 ? 1 'SSA (A^2)' 3120 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 2 "O3'" ? ? ? 1_555 A GRB 3 P ? ? A C 2 A GRB 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale both ? B C 2 "O3'" ? ? ? 1_555 B GRB 3 P ? ? B C 2 B GRB 3 1_555 ? ? ? ? ? ? ? 1.573 ? ? metalc1 metalc ? ? A G 6 O6 B ? ? 1_555 D CA . CA ? ? A G 6 A CA 10 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc2 metalc ? ? A G 6 O6 A ? ? 1_555 D CA . CA ? ? A G 6 A CA 10 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc3 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 10 A HOH 19 1_555 ? ? ? ? ? ? ? 2.434 ? ? metalc4 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 10 A HOH 21 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc5 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 10 A HOH 23 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc6 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 10 A HOH 26 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc7 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 10 A HOH 59 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 10 A HOH 71 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc9 metalc ? ? B G 6 O6 ? ? ? 1_555 F CA . CA ? ? B G 6 B CA 9 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc10 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? B CA 9 B HOH 13 1_555 ? ? ? ? ? ? ? 2.462 ? ? metalc11 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? B CA 9 B HOH 29 1_555 ? ? ? ? ? ? ? 2.609 ? ? metalc12 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? B CA 9 B HOH 50 1_555 ? ? ? ? ? ? ? 2.464 ? ? metalc13 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O A ? B CA 9 B HOH 54 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc14 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? B CA 9 B HOH 92 1_555 ? ? ? ? ? ? ? 2.432 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 B A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O6 A A G 6 ? A G 6 ? 1_555 1.8 ? 2 O6 B A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 19 ? 1_555 93.6 ? 3 O6 A A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 19 ? 1_555 93.5 ? 4 O6 B A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 21 ? 1_555 75.3 ? 5 O6 A A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 21 ? 1_555 75.6 ? 6 O ? H HOH . ? A HOH 19 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 21 ? 1_555 167.1 ? 7 O6 B A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 23 ? 1_555 71.5 ? 8 O6 A A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 23 ? 1_555 69.7 ? 9 O ? H HOH . ? A HOH 19 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 23 ? 1_555 85.0 ? 10 O ? H HOH . ? A HOH 21 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 23 ? 1_555 97.4 ? 11 O6 B A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 26 ? 1_555 76.5 ? 12 O6 A A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 26 ? 1_555 78.3 ? 13 O ? H HOH . ? A HOH 19 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 26 ? 1_555 78.6 ? 14 O ? H HOH . ? A HOH 21 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 26 ? 1_555 92.2 ? 15 O ? H HOH . ? A HOH 23 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 26 ? 1_555 142.9 ? 16 O6 B A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 135.4 ? 17 O6 A A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 137.0 ? 18 O ? H HOH . ? A HOH 19 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 111.0 ? 19 O ? H HOH . ? A HOH 21 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 74.3 ? 20 O ? H HOH . ? A HOH 23 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 144.1 ? 21 O ? H HOH . ? A HOH 26 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 73.0 ? 22 O6 B A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 71 ? 1_555 143.2 ? 23 O6 A A G 6 ? A G 6 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 71 ? 1_555 141.4 ? 24 O ? H HOH . ? A HOH 19 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 71 ? 1_555 88.0 ? 25 O ? H HOH . ? A HOH 21 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 71 ? 1_555 104.9 ? 26 O ? H HOH . ? A HOH 23 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 71 ? 1_555 72.0 ? 27 O ? H HOH . ? A HOH 26 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 71 ? 1_555 139.3 ? 28 O ? H HOH . ? A HOH 59 ? 1_555 CA ? D CA . ? A CA 10 ? 1_555 O ? H HOH . ? A HOH 71 ? 1_555 76.6 ? 29 O6 ? B G 6 ? B G 6 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 13 ? 1_555 84.0 ? 30 O6 ? B G 6 ? B G 6 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 29 ? 1_555 67.8 ? 31 O ? I HOH . ? B HOH 13 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 29 ? 1_555 138.3 ? 32 O6 ? B G 6 ? B G 6 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 50 ? 1_555 113.1 ? 33 O ? I HOH . ? B HOH 13 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 50 ? 1_555 82.6 ? 34 O ? I HOH . ? B HOH 29 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 50 ? 1_555 81.3 ? 35 O6 ? B G 6 ? B G 6 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O A I HOH . ? B HOH 54 ? 1_555 71.8 ? 36 O ? I HOH . ? B HOH 13 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O A I HOH . ? B HOH 54 ? 1_555 87.1 ? 37 O ? I HOH . ? B HOH 29 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O A I HOH . ? B HOH 54 ? 1_555 110.7 ? 38 O ? I HOH . ? B HOH 50 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O A I HOH . ? B HOH 54 ? 1_555 167.9 ? 39 O6 ? B G 6 ? B G 6 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 147.4 ? 40 O ? I HOH . ? B HOH 13 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 75.1 ? 41 O ? I HOH . ? B HOH 29 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 142.3 ? 42 O ? I HOH . ? B HOH 50 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 89.0 ? 43 O A I HOH . ? B HOH 54 ? 1_555 CA ? F CA . ? B CA 9 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 82.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 9 ? 7 'BINDING SITE FOR RESIDUE GOL A 9' AC2 Software A CA 10 ? 7 'BINDING SITE FOR RESIDUE CA A 10' AC3 Software A BR 11 ? 6 'BINDING SITE FOR RESIDUE BR A 11' AC4 Software B CA 9 ? 6 'BINDING SITE FOR RESIDUE CA B 9' AC5 Software B BR 10 ? 4 'BINDING SITE FOR RESIDUE BR B 10' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 6 ? G A 6 . ? 1_555 ? 2 AC1 7 G A 7 ? G A 7 . ? 1_555 ? 3 AC1 7 HOH H . ? HOH A 21 . ? 1_555 ? 4 AC1 7 HOH H . ? HOH A 34 . ? 1_555 ? 5 AC1 7 HOH H . ? HOH A 56 . ? 1_555 ? 6 AC1 7 HOH H . ? HOH A 59 . ? 1_555 ? 7 AC1 7 HOH H . ? HOH A 89 . ? 1_555 ? 8 AC2 7 G A 6 ? G A 6 . ? 1_555 ? 9 AC2 7 HOH H . ? HOH A 19 . ? 1_555 ? 10 AC2 7 HOH H . ? HOH A 21 . ? 1_555 ? 11 AC2 7 HOH H . ? HOH A 23 . ? 1_555 ? 12 AC2 7 HOH H . ? HOH A 26 . ? 1_555 ? 13 AC2 7 HOH H . ? HOH A 59 . ? 1_555 ? 14 AC2 7 HOH H . ? HOH A 71 . ? 1_555 ? 15 AC3 6 GRB A 3 ? GRB A 3 . ? 1_555 ? 16 AC3 6 C B 5 ? C B 5 . ? 4_455 ? 17 AC3 6 G B 6 ? G B 6 . ? 4_455 ? 18 AC3 6 G B 7 ? G B 7 . ? 1_555 ? 19 AC3 6 HOH I . ? HOH B 25 . ? 4_455 ? 20 AC3 6 HOH I . ? HOH B 36 . ? 1_555 ? 21 AC4 6 G B 6 ? G B 6 . ? 1_555 ? 22 AC4 6 HOH I . ? HOH B 13 . ? 1_555 ? 23 AC4 6 HOH I . ? HOH B 29 . ? 1_555 ? 24 AC4 6 HOH I . ? HOH B 50 . ? 1_555 ? 25 AC4 6 HOH I . ? HOH B 54 . ? 1_555 ? 26 AC4 6 HOH I . ? HOH B 92 . ? 1_555 ? 27 AC5 4 HOH H . ? HOH A 63 . ? 1_555 ? 28 AC5 4 HOH H . ? HOH A 73 . ? 1_545 ? 29 AC5 4 GRB B 3 ? GRB B 3 . ? 1_555 ? 30 AC5 4 G B 4 ? G B 4 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GRB 3 A GRB 3 ? G ? 2 B GRB 3 B GRB 3 ? G ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BR BR BR N N 1 C OP3 O N N 2 C P P N N 3 C OP1 O N N 4 C OP2 O N N 5 C "O5'" O N N 6 C "C5'" C N N 7 C "C4'" C N R 8 C "O4'" O N N 9 C "C3'" C N S 10 C "O3'" O N N 11 C "C2'" C N R 12 C "O2'" O N N 13 C "C1'" C N R 14 C N1 N N N 15 C C2 C N N 16 C O2 O N N 17 C N3 N N N 18 C C4 C N N 19 C N4 N N N 20 C C5 C N N 21 C C6 C N N 22 C HOP3 H N N 23 C HOP2 H N N 24 C "H5'" H N N 25 C "H5''" H N N 26 C "H4'" H N N 27 C "H3'" H N N 28 C "HO3'" H N N 29 C "H2'" H N N 30 C "HO2'" H N N 31 C "H1'" H N N 32 C H41 H N N 33 C H42 H N N 34 C H5 H N N 35 C H6 H N N 36 CA CA CA N N 37 G OP3 O N N 38 G P P N N 39 G OP1 O N N 40 G OP2 O N N 41 G "O5'" O N N 42 G "C5'" C N N 43 G "C4'" C N R 44 G "O4'" O N N 45 G "C3'" C N S 46 G "O3'" O N N 47 G "C2'" C N R 48 G "O2'" O N N 49 G "C1'" C N R 50 G N9 N Y N 51 G C8 C Y N 52 G N7 N Y N 53 G C5 C Y N 54 G C6 C N N 55 G O6 O N N 56 G N1 N N N 57 G C2 C N N 58 G N2 N N N 59 G N3 N N N 60 G C4 C Y N 61 G HOP3 H N N 62 G HOP2 H N N 63 G "H5'" H N N 64 G "H5''" H N N 65 G "H4'" H N N 66 G "H3'" H N N 67 G "HO3'" H N N 68 G "H2'" H N N 69 G "HO2'" H N N 70 G "H1'" H N N 71 G H8 H N N 72 G H1 H N N 73 G H21 H N N 74 G H22 H N N 75 GOL C1 C N N 76 GOL O1 O N N 77 GOL C2 C N N 78 GOL O2 O N N 79 GOL C3 C N N 80 GOL O3 O N N 81 GOL H11 H N N 82 GOL H12 H N N 83 GOL HO1 H N N 84 GOL H2 H N N 85 GOL HO2 H N N 86 GOL H31 H N N 87 GOL H32 H N N 88 GOL HO3 H N N 89 GRB P P N N 90 GRB BR BR N N 91 GRB N1 N N N 92 GRB C2 C N N 93 GRB N2 N N N 94 GRB N3 N N N 95 GRB C4 C Y N 96 GRB C5 C Y N 97 GRB C6 C N N 98 GRB O6 O N N 99 GRB N7 N Y N 100 GRB C8 C Y N 101 GRB N9 N Y N 102 GRB "C1'" C N R 103 GRB "C2'" C N R 104 GRB "O2'" O N N 105 GRB "C3'" C N S 106 GRB "O3'" O N N 107 GRB "C4'" C N R 108 GRB "O4'" O N N 109 GRB "C5'" C N N 110 GRB "O5'" O N N 111 GRB OP1 O N N 112 GRB OP2 O N N 113 GRB OP3 O N N 114 GRB HN1 H N N 115 GRB HN2 H N N 116 GRB HN2A H N N 117 GRB "H1'" H N N 118 GRB "H2'" H N N 119 GRB "HO2'" H N N 120 GRB "H3'" H N N 121 GRB "HO3'" H N N 122 GRB "H4'" H N N 123 GRB "H5'" H N N 124 GRB "H5'A" H N N 125 GRB HOP1 H N N 126 GRB HOP3 H N N 127 HOH O O N N 128 HOH H1 H N N 129 HOH H2 H N N 130 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 GOL C1 O1 sing N N 77 GOL C1 C2 sing N N 78 GOL C1 H11 sing N N 79 GOL C1 H12 sing N N 80 GOL O1 HO1 sing N N 81 GOL C2 O2 sing N N 82 GOL C2 C3 sing N N 83 GOL C2 H2 sing N N 84 GOL O2 HO2 sing N N 85 GOL C3 O3 sing N N 86 GOL C3 H31 sing N N 87 GOL C3 H32 sing N N 88 GOL O3 HO3 sing N N 89 GRB OP2 P doub N N 90 GRB OP1 P sing N N 91 GRB P OP3 sing N N 92 GRB P "O5'" sing N N 93 GRB C8 BR sing N N 94 GRB C2 N1 sing N N 95 GRB N1 C6 sing N N 96 GRB N1 HN1 sing N N 97 GRB N2 C2 sing N N 98 GRB C2 N3 doub N N 99 GRB N2 HN2 sing N N 100 GRB N2 HN2A sing N N 101 GRB N3 C4 sing N N 102 GRB C4 C5 doub Y N 103 GRB C4 N9 sing Y N 104 GRB C6 C5 sing N N 105 GRB C5 N7 sing Y N 106 GRB C6 O6 doub N N 107 GRB N7 C8 doub Y N 108 GRB N9 C8 sing Y N 109 GRB "C1'" N9 sing N N 110 GRB "O4'" "C1'" sing N N 111 GRB "C1'" "C2'" sing N N 112 GRB "C1'" "H1'" sing N N 113 GRB "C3'" "C2'" sing N N 114 GRB "C2'" "O2'" sing N N 115 GRB "C2'" "H2'" sing N N 116 GRB "O2'" "HO2'" sing N N 117 GRB "C4'" "C3'" sing N N 118 GRB "O3'" "C3'" sing N N 119 GRB "C3'" "H3'" sing N N 120 GRB "O3'" "HO3'" sing N N 121 GRB "C5'" "C4'" sing N N 122 GRB "C4'" "O4'" sing N N 123 GRB "C4'" "H4'" sing N N 124 GRB "O5'" "C5'" sing N N 125 GRB "C5'" "H5'" sing N N 126 GRB "C5'" "H5'A" sing N N 127 GRB OP1 HOP1 sing N N 128 GRB OP3 HOP3 sing N N 129 HOH O H1 sing N N 130 HOH O H2 sing N N 131 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3R1E 'double helix' 3R1E 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 8 1_555 -0.307 -0.103 0.027 -3.380 -7.681 0.537 1 A_G1:C8_B A 1 ? B 8 ? 19 1 1 A C 2 1_555 B G 7 1_555 0.177 -0.112 0.066 1.791 -10.828 -0.687 2 A_C2:G7_B A 2 ? B 7 ? 19 1 1 A G 4 1_555 B C 5 1_555 -0.129 -0.118 0.192 4.130 -9.012 -2.015 3 A_G4:C5_B A 4 ? B 5 ? 19 1 1 A C 5 1_555 B G 4 1_555 0.050 -0.107 0.118 1.826 -12.132 -4.033 4 A_C5:G4_B A 5 ? B 4 ? 19 1 1 A G 7 1_555 B C 2 1_555 -0.224 -0.182 0.147 -2.386 -9.247 -0.592 5 A_G7:C2_B A 7 ? B 2 ? 19 1 1 A C 8 1_555 B G 1 1_555 0.259 -0.157 0.190 -0.414 -4.697 -1.023 6 A_C8:G1_B A 8 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 8 1_555 A C 2 1_555 B G 7 1_555 -0.535 -1.023 3.207 0.587 6.599 33.958 -2.690 0.987 2.952 11.166 -0.994 34.579 1 AA_G1C2:G7C8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A C 2 1_555 B G 7 1_555 A G 4 1_555 B C 5 1_555 -0.093 -2.942 6.190 -4.005 14.409 60.932 -4.012 -0.238 5.437 13.983 3.887 62.568 2 AA_C2G4:C5G7_BB A 2 ? B 7 ? A 4 ? B 5 ? 1 A G 4 1_555 B C 5 1_555 A C 5 1_555 B G 4 1_555 -0.394 -1.720 3.325 -0.784 5.716 34.870 -3.660 0.537 3.022 9.458 1.298 35.330 3 AA_G4C5:G4C5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A C 5 1_555 B G 4 1_555 A G 7 1_555 B C 2 1_555 1.117 -3.933 6.225 3.335 12.250 58.782 -5.026 -0.819 5.434 12.324 -3.355 60.018 4 AA_C5G7:C2G4_BB A 5 ? B 4 ? A 7 ? B 2 ? 1 A G 7 1_555 B C 2 1_555 A C 8 1_555 B G 1 1_555 0.165 -1.353 3.290 -0.582 2.630 35.590 -2.586 -0.352 3.182 4.296 0.950 35.688 5 AA_G7C8:G1C2_BB A 7 ? B 2 ? A 8 ? B 1 ? # _atom_sites.entry_id 3R1E _atom_sites.fract_transf_matrix[1][1] 0.019737 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010415 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044370 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025591 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CA N O P # loop_