HEADER OXIDOREDUCTASE 10-MAR-11 3R1J TITLE CRYSTAL STRUCTURE OF ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE TITLE 2 FROM MYCOBACTERIUM AVIUM, NATIVE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: MAV_4353; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, OXIDOREDUCTASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3R1J 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 3R1J 1 JRNL VERSN REVDAT 1 06-APR-11 3R1J 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 42393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2139 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2957 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.217 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3993 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2711 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5444 ; 1.365 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6523 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;27.769 ;21.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 625 ;11.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;16.796 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4474 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 875 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2444 ; 0.702 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 989 ; 0.195 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3945 ; 1.252 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1549 ; 2.070 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1491 ; 3.269 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5240 37.9180 59.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.0437 REMARK 3 T33: 0.0466 T12: 0.0662 REMARK 3 T13: -0.0093 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.6027 L22: 1.1447 REMARK 3 L33: 1.0142 L12: -0.5428 REMARK 3 L13: 0.1601 L23: -0.1854 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: -0.1042 S13: -0.0216 REMARK 3 S21: 0.1775 S22: 0.1896 S23: -0.0421 REMARK 3 S31: 0.1197 S32: 0.0216 S33: -0.0364 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 292 REMARK 3 ORIGIN FOR THE GROUP (A): 56.8800 6.8490 72.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.1473 REMARK 3 T33: 0.0640 T12: 0.1204 REMARK 3 T13: 0.0434 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 1.1362 L22: 1.0739 REMARK 3 L33: 1.5867 L12: -0.7519 REMARK 3 L13: 0.0095 L23: -0.1215 REMARK 3 S TENSOR REMARK 3 S11: -0.2210 S12: -0.3094 S13: -0.1199 REMARK 3 S21: 0.1844 S22: 0.2587 S23: 0.1510 REMARK 3 S31: -0.0753 S32: -0.2152 S33: -0.0377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 41.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 218640E10. REMARK 280 PACT SCREEN CONDITION E10: 0.2 M NA/K PHOSPHATE, 20% PEG3350, REMARK 280 MYAVA.01188.B.A1 PW28977 AT 28.9MG/ML. CRYOPROTECTION: 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, REMARK 280 PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.47500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.95000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.31000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 300 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 HIS A 71 REMARK 465 PRO A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 SER A 75 REMARK 465 ALA A 76 REMARK 465 LEU A 77 REMARK 465 ALA A 78 REMARK 465 ALA A 79 REMARK 465 LYS A 80 REMARK 465 HIS A 81 REMARK 465 LEU A 82 REMARK 465 PRO A 83 REMARK 465 VAL A 84 REMARK 465 ILE A 85 REMARK 465 THR A 86 REMARK 465 PRO A 87 REMARK 465 ILE A 88 REMARK 465 ASP A 89 REMARK 465 SER A 90 REMARK 465 GLU A 91 REMARK 465 TYR A 92 REMARK 465 GLY A 93 REMARK 465 LYS A 94 REMARK 465 TYR A 157 REMARK 465 ASP A 158 REMARK 465 TYR A 159 REMARK 465 VAL A 160 REMARK 465 ARG A 161 REMARK 465 ASN A 162 REMARK 465 ASP A 163 REMARK 465 PRO A 164 REMARK 465 MET A 165 REMARK 465 ASN A 166 REMARK 465 ASP A 167 REMARK 465 THR A 168 REMARK 465 GLN A 169 REMARK 465 ARG A 170 REMARK 465 ALA A 171 REMARK 465 PHE A 172 REMARK 465 ARG A 173 REMARK 465 GLN A 174 REMARK 465 ALA A 175 REMARK 465 PHE A 176 REMARK 465 GLU A 177 REMARK 465 LYS A 178 REMARK 465 SER A 297 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 70 REMARK 465 HIS B 71 REMARK 465 PRO B 72 REMARK 465 ALA B 73 REMARK 465 ALA B 74 REMARK 465 SER B 75 REMARK 465 ALA B 76 REMARK 465 LEU B 77 REMARK 465 ALA B 78 REMARK 465 ALA B 79 REMARK 465 LYS B 80 REMARK 465 HIS B 81 REMARK 465 LEU B 82 REMARK 465 PRO B 83 REMARK 465 VAL B 84 REMARK 465 ILE B 85 REMARK 465 THR B 86 REMARK 465 PRO B 87 REMARK 465 ILE B 88 REMARK 465 ASP B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 TYR B 92 REMARK 465 GLY B 93 REMARK 465 LYS B 94 REMARK 465 TYR B 157 REMARK 465 ASP B 158 REMARK 465 TYR B 159 REMARK 465 VAL B 160 REMARK 465 ARG B 161 REMARK 465 ASN B 162 REMARK 465 ASP B 163 REMARK 465 PRO B 164 REMARK 465 MET B 165 REMARK 465 ASN B 166 REMARK 465 ASP B 167 REMARK 465 THR B 168 REMARK 465 GLN B 169 REMARK 465 ARG B 170 REMARK 465 ALA B 171 REMARK 465 PHE B 172 REMARK 465 ARG B 173 REMARK 465 GLN B 174 REMARK 465 ALA B 175 REMARK 465 PHE B 176 REMARK 465 GLU B 177 REMARK 465 LYS B 178 REMARK 465 GLU B 293 REMARK 465 VAL B 294 REMARK 465 LEU B 295 REMARK 465 ALA B 296 REMARK 465 SER B 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 69 CG1 CG2 CD1 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 156 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 140 O HOH B 393 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 283 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 43 -36.16 75.47 REMARK 500 GLN A 50 54.38 -91.23 REMARK 500 ALA A 201 -124.91 -153.26 REMARK 500 ASP A 261 20.42 49.89 REMARK 500 GLN A 262 155.74 -49.89 REMARK 500 LYS B 43 -40.53 76.58 REMARK 500 GLN B 50 56.04 -91.94 REMARK 500 ASN B 107 64.24 -102.81 REMARK 500 ALA B 201 -128.88 -155.26 REMARK 500 ASP B 261 24.88 46.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 299 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 ASP A 101 OD1 90.7 REMARK 620 3 HIS A 253 NE2 90.0 93.4 REMARK 620 4 HOH A 325 O 97.0 103.2 161.9 REMARK 620 5 HOH A 448 O 177.2 87.6 92.4 81.1 REMARK 620 6 HOH A 449 O 96.0 166.7 98.1 64.6 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 99 NE2 REMARK 620 2 ASP B 101 OD1 97.5 REMARK 620 3 HIS B 253 NE2 97.2 89.2 REMARK 620 4 HOH B 429 O 173.9 82.2 88.9 REMARK 620 5 HOH B 430 O 94.3 93.5 167.7 79.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYAVA.01188.B RELATED DB: TARGETDB DBREF 3R1J A 1 297 UNP A0QKQ0 A0QKQ0_MYCA1 1 297 DBREF 3R1J B 1 297 UNP A0QKQ0 A0QKQ0_MYCA1 1 297 SEQADV 3R1J GLY A -3 UNP A0QKQ0 EXPRESSION TAG SEQADV 3R1J PRO A -2 UNP A0QKQ0 EXPRESSION TAG SEQADV 3R1J GLY A -1 UNP A0QKQ0 EXPRESSION TAG SEQADV 3R1J SER A 0 UNP A0QKQ0 EXPRESSION TAG SEQADV 3R1J GLY B -3 UNP A0QKQ0 EXPRESSION TAG SEQADV 3R1J PRO B -2 UNP A0QKQ0 EXPRESSION TAG SEQADV 3R1J GLY B -1 UNP A0QKQ0 EXPRESSION TAG SEQADV 3R1J SER B 0 UNP A0QKQ0 EXPRESSION TAG SEQRES 1 A 301 GLY PRO GLY SER MET THR GLY GLN ILE THR VAL THR LYS SEQRES 2 A 301 LEU GLY SER ARG ILE GLY ALA ARG VAL ASP GLY VAL ARG SEQRES 3 A 301 LEU GLY GLY ASP LEU ASP ASP ALA THR VAL GLU GLN ILE SEQRES 4 A 301 ARG ARG ALA LEU LEU THR HIS LYS VAL ILE PHE PHE ARG SEQRES 5 A 301 HIS GLN HIS HIS LEU ASP ASP SER ARG GLN LEU GLU PHE SEQRES 6 A 301 ALA ARG LEU LEU GLY THR PRO ILE GLY HIS PRO ALA ALA SEQRES 7 A 301 SER ALA LEU ALA ALA LYS HIS LEU PRO VAL ILE THR PRO SEQRES 8 A 301 ILE ASP SER GLU TYR GLY LYS ALA THR ARG TRP HIS THR SEQRES 9 A 301 ASP VAL THR PHE ALA ALA ASN TYR PRO ALA ALA SER ILE SEQRES 10 A 301 LEU ARG ALA VAL THR LEU PRO SER TYR GLY GLY SER THR SEQRES 11 A 301 LEU TRP ALA SER THR VAL ALA ALA TYR GLN GLN LEU PRO SEQRES 12 A 301 GLU PRO LEU ARG HIS LEU THR GLU ASN LEU TRP ALA LEU SEQRES 13 A 301 HIS THR ASN ARG TYR ASP TYR VAL ARG ASN ASP PRO MET SEQRES 14 A 301 ASN ASP THR GLN ARG ALA PHE ARG GLN ALA PHE GLU LYS SEQRES 15 A 301 PRO ASP PHE ARG THR GLU HIS PRO VAL VAL ARG VAL HIS SEQRES 16 A 301 PRO GLU THR GLY GLU ARG ALA LEU LEU ALA GLY ASP PHE SEQRES 17 A 301 VAL ARG GLY PHE VAL GLY LEU ASP GLY HIS GLU SER SER SEQRES 18 A 301 VAL LEU LEU GLU LEU LEU GLN ARG ARG ILE THR MET PRO SEQRES 19 A 301 GLU ASN THR VAL ARG TRP SER TRP ALA PRO GLY ASP VAL SEQRES 20 A 301 ALA MET TRP ASP ASN ARG ALA THR GLN HIS ARG ALA ILE SEQRES 21 A 301 ASP ASP TYR ASP ASP GLN PRO ARG LEU MET HIS ARG ILE SEQRES 22 A 301 THR LEU MET GLY ASP VAL PRO VAL ASN VAL HIS GLY GLU SEQRES 23 A 301 ARG SER ARG VAL ILE SER GLY ALA PRO LEU GLU VAL LEU SEQRES 24 A 301 ALA SER SEQRES 1 B 301 GLY PRO GLY SER MET THR GLY GLN ILE THR VAL THR LYS SEQRES 2 B 301 LEU GLY SER ARG ILE GLY ALA ARG VAL ASP GLY VAL ARG SEQRES 3 B 301 LEU GLY GLY ASP LEU ASP ASP ALA THR VAL GLU GLN ILE SEQRES 4 B 301 ARG ARG ALA LEU LEU THR HIS LYS VAL ILE PHE PHE ARG SEQRES 5 B 301 HIS GLN HIS HIS LEU ASP ASP SER ARG GLN LEU GLU PHE SEQRES 6 B 301 ALA ARG LEU LEU GLY THR PRO ILE GLY HIS PRO ALA ALA SEQRES 7 B 301 SER ALA LEU ALA ALA LYS HIS LEU PRO VAL ILE THR PRO SEQRES 8 B 301 ILE ASP SER GLU TYR GLY LYS ALA THR ARG TRP HIS THR SEQRES 9 B 301 ASP VAL THR PHE ALA ALA ASN TYR PRO ALA ALA SER ILE SEQRES 10 B 301 LEU ARG ALA VAL THR LEU PRO SER TYR GLY GLY SER THR SEQRES 11 B 301 LEU TRP ALA SER THR VAL ALA ALA TYR GLN GLN LEU PRO SEQRES 12 B 301 GLU PRO LEU ARG HIS LEU THR GLU ASN LEU TRP ALA LEU SEQRES 13 B 301 HIS THR ASN ARG TYR ASP TYR VAL ARG ASN ASP PRO MET SEQRES 14 B 301 ASN ASP THR GLN ARG ALA PHE ARG GLN ALA PHE GLU LYS SEQRES 15 B 301 PRO ASP PHE ARG THR GLU HIS PRO VAL VAL ARG VAL HIS SEQRES 16 B 301 PRO GLU THR GLY GLU ARG ALA LEU LEU ALA GLY ASP PHE SEQRES 17 B 301 VAL ARG GLY PHE VAL GLY LEU ASP GLY HIS GLU SER SER SEQRES 18 B 301 VAL LEU LEU GLU LEU LEU GLN ARG ARG ILE THR MET PRO SEQRES 19 B 301 GLU ASN THR VAL ARG TRP SER TRP ALA PRO GLY ASP VAL SEQRES 20 B 301 ALA MET TRP ASP ASN ARG ALA THR GLN HIS ARG ALA ILE SEQRES 21 B 301 ASP ASP TYR ASP ASP GLN PRO ARG LEU MET HIS ARG ILE SEQRES 22 B 301 THR LEU MET GLY ASP VAL PRO VAL ASN VAL HIS GLY GLU SEQRES 23 B 301 ARG SER ARG VAL ILE SER GLY ALA PRO LEU GLU VAL LEU SEQRES 24 B 301 ALA SER HET EDO A 298 4 HET FE A 299 1 HET CL A 300 1 HET CL A 301 1 HET EDO B 298 4 HET EDO B 299 4 HET FE B 300 1 HET CL B 301 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 FE 2(FE 3+) FORMUL 5 CL 3(CL 1-) FORMUL 11 HOH *326(H2 O) HELIX 1 1 ASP A 28 LYS A 43 1 16 HELIX 2 2 ASP A 54 GLY A 66 1 13 HELIX 3 3 THR A 131 GLN A 137 1 7 HELIX 4 4 PRO A 139 GLU A 147 1 9 HELIX 5 5 ASP A 212 THR A 228 1 17 HELIX 6 6 MET A 229 GLU A 231 5 3 HELIX 7 7 ASP B 28 LYS B 43 1 16 HELIX 8 8 ASP B 54 GLY B 66 1 13 HELIX 9 9 THR B 131 GLN B 137 1 7 HELIX 10 10 PRO B 139 GLU B 147 1 9 HELIX 11 11 ASP B 212 THR B 228 1 17 HELIX 12 12 MET B 229 GLU B 231 5 3 SHEET 1 A 6 THR A 6 LYS A 9 0 SHEET 2 A 6 ALA A 16 ASP A 19 -1 O ARG A 17 N THR A 8 SHEET 3 A 6 VAL A 44 PHE A 47 1 O PHE A 46 N VAL A 18 SHEET 4 A 6 VAL A 243 ASP A 247 -1 O MET A 245 N ILE A 45 SHEET 5 A 6 ALA A 111 THR A 118 -1 N LEU A 114 O ALA A 244 SHEET 6 A 6 LEU A 265 LEU A 271 -1 O LEU A 271 N ALA A 111 SHEET 1 B 3 THR A 233 TRP A 236 0 SHEET 2 B 3 THR A 126 SER A 130 -1 N THR A 126 O TRP A 236 SHEET 3 B 3 THR A 251 ALA A 255 -1 O ARG A 254 N LEU A 127 SHEET 1 C 4 VAL A 205 PHE A 208 0 SHEET 2 C 4 TRP A 150 THR A 154 -1 N LEU A 152 O ARG A 206 SHEET 3 C 4 ARG A 182 PRO A 186 -1 O HIS A 185 N ALA A 151 SHEET 4 C 4 ARG A 285 SER A 288 -1 O ARG A 285 N GLU A 184 SHEET 1 D 2 VAL A 188 VAL A 190 0 SHEET 2 D 2 ARG A 197 LEU A 199 -1 O ALA A 198 N ARG A 189 SHEET 1 E 6 THR B 6 LYS B 9 0 SHEET 2 E 6 ALA B 16 ASP B 19 -1 O ARG B 17 N THR B 8 SHEET 3 E 6 VAL B 44 PHE B 47 1 O PHE B 46 N VAL B 18 SHEET 4 E 6 VAL B 243 ASP B 247 -1 O VAL B 243 N PHE B 47 SHEET 5 E 6 ALA B 111 THR B 118 -1 N LEU B 114 O ALA B 244 SHEET 6 E 6 LEU B 265 LEU B 271 -1 O LEU B 271 N ALA B 111 SHEET 1 F 3 THR B 233 TRP B 236 0 SHEET 2 F 3 THR B 126 SER B 130 -1 N THR B 126 O TRP B 236 SHEET 3 F 3 THR B 251 ALA B 255 -1 O GLN B 252 N ALA B 129 SHEET 1 G 4 VAL B 205 PHE B 208 0 SHEET 2 G 4 TRP B 150 THR B 154 -1 N LEU B 152 O ARG B 206 SHEET 3 G 4 ARG B 182 PRO B 186 -1 O THR B 183 N HIS B 153 SHEET 4 G 4 ARG B 285 SER B 288 -1 O ARG B 285 N GLU B 184 SHEET 1 H 2 VAL B 188 VAL B 190 0 SHEET 2 H 2 ARG B 197 LEU B 199 -1 O ALA B 198 N ARG B 189 LINK NE2 HIS A 99 FE FE A 299 1555 1555 2.17 LINK OD1 ASP A 101 FE FE A 299 1555 1555 2.10 LINK NE2 HIS A 253 FE FE A 299 1555 1555 2.15 LINK FE FE A 299 O HOH A 325 1555 1555 1.99 LINK FE FE A 299 O HOH A 448 1555 1555 2.32 LINK FE FE A 299 O HOH A 449 1555 1555 2.36 LINK NE2 HIS B 99 FE FE B 300 1555 1555 2.18 LINK OD1 ASP B 101 FE FE B 300 1555 1555 2.24 LINK NE2 HIS B 253 FE FE B 300 1555 1555 2.14 LINK FE FE B 300 O HOH B 429 1555 1555 2.40 LINK FE FE B 300 O HOH B 430 1555 1555 1.98 SITE 1 AC1 3 ARG A 36 GLU A 193 HOH A 458 SITE 1 AC2 6 HIS A 99 ASP A 101 HIS A 253 HOH A 325 SITE 2 AC2 6 HOH A 448 HOH A 449 SITE 1 AC3 2 ARG A 235 HOH A 370 SITE 1 AC4 2 ARG A 17 HIS A 49 SITE 1 AC5 2 ARG B 48 HIS B 49 SITE 1 AC6 7 THR B 100 TYR B 108 THR B 131 LEU B 199 SITE 2 AC6 7 ASN B 248 ARG B 249 THR B 251 SITE 1 AC7 5 HIS B 99 ASP B 101 HIS B 253 HOH B 429 SITE 2 AC7 5 HOH B 430 SITE 1 AC8 3 LEU B 127 ARG B 235 HOH B 337 CRYST1 70.950 105.310 89.250 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011204 0.00000