HEADER TRANSFERASE 11-MAR-11 3R20 TITLE CRYSTAL STRUCTURE OF CYTIDYLATE KINASE FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTIDYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CK, CYTIDINE MONOPHOSPHATE KINASE; COMPND 5 EC: 2.7.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: CMK, MSMEG_3739; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, CYTIDYLATE KINASE, ADP, DCMP, DCDP, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3R20 1 REMARK SEQADV REVDAT 3 12-OCT-16 3R20 1 REMARK REVDAT 2 22-APR-15 3R20 1 JRNL VERSN REVDAT 1 13-APR-11 3R20 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.K.CRAIG,J.K.RISLER,K.A.LOESCH,W.DONG,D.BAKER,L.K.BARRETT, REMARK 1 AUTH 2 S.SUBRAMANIAN,R.SAMUDRALA,W.C.VAN VOORHIS REMARK 1 TITL MYCOBACTERIUM CYTIDYLATE KINASE APPEARS TO BE AN UNDRUGGABLE REMARK 1 TITL 2 TARGET. REMARK 1 REF J BIOMOL SCREEN V. 21 695 2016 REMARK 1 REFN ISSN 1087-0571 REMARK 1 PMID 27146385 REMARK 1 DOI 10.1177/1087057116646702 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 15571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.346 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1601 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2182 ; 1.341 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 4.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;27.900 ;23.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;10.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1201 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1077 ; 0.692 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1721 ; 1.212 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 524 ; 2.187 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 461 ; 3.647 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1908 67.5576 14.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.0615 REMARK 3 T33: 0.0768 T12: 0.0184 REMARK 3 T13: 0.0295 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.0594 L22: 3.4664 REMARK 3 L33: 0.4303 L12: -0.3444 REMARK 3 L13: 0.0419 L23: 0.4872 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.0246 S13: 0.0429 REMARK 3 S21: -0.1490 S22: -0.0717 S23: -0.2248 REMARK 3 S31: 0.0338 S32: 0.0426 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1732 73.9561 13.5015 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0070 REMARK 3 T33: 0.1016 T12: 0.0040 REMARK 3 T13: 0.0490 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.0238 L22: 3.2656 REMARK 3 L33: 0.9641 L12: -0.2167 REMARK 3 L13: 0.0032 L23: 0.4710 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.0042 S13: 0.0116 REMARK 3 S21: -0.1428 S22: 0.0579 S23: -0.3605 REMARK 3 S31: 0.0573 S32: 0.0012 S33: -0.0534 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8130 60.9748 8.4516 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0522 REMARK 3 T33: 0.0136 T12: 0.0149 REMARK 3 T13: -0.0099 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.0729 L22: 2.1104 REMARK 3 L33: 2.1418 L12: -0.8090 REMARK 3 L13: -0.0113 L23: -1.2174 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: 0.0766 S13: -0.0114 REMARK 3 S21: -0.2228 S22: -0.0671 S23: 0.0884 REMARK 3 S31: 0.0352 S32: -0.0128 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0627 63.3720 32.7571 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.0717 REMARK 3 T33: 0.1272 T12: 0.0576 REMARK 3 T13: -0.0003 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 6.1915 L22: 7.8749 REMARK 3 L33: 5.2295 L12: 1.4014 REMARK 3 L13: 1.8079 L23: 3.5443 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.0319 S13: 0.0532 REMARK 3 S21: -0.0427 S22: 0.2882 S23: -0.9407 REMARK 3 S31: 0.2108 S32: 0.4361 S33: -0.2800 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8419 63.7862 26.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0845 REMARK 3 T33: 0.0574 T12: -0.0223 REMARK 3 T13: 0.0245 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.3947 L22: 1.6941 REMARK 3 L33: 1.3033 L12: -0.3188 REMARK 3 L13: 0.2459 L23: 1.0699 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0626 S13: 0.0089 REMARK 3 S21: 0.0864 S22: -0.0092 S23: 0.0508 REMARK 3 S31: 0.0398 S32: -0.0800 S33: 0.0176 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0967 46.1565 20.2226 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0252 REMARK 3 T33: 0.1706 T12: 0.0048 REMARK 3 T13: -0.0071 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 10.9130 L22: 7.5560 REMARK 3 L33: 12.9502 L12: 2.7701 REMARK 3 L13: 7.2523 L23: 9.3034 REMARK 3 S TENSOR REMARK 3 S11: 0.2031 S12: -0.1747 S13: -0.2601 REMARK 3 S21: 0.2025 S22: -0.1964 S23: 0.0393 REMARK 3 S31: 0.2907 S32: -0.3059 S33: -0.0067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3R8C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYSMA.00663.A.A1 PS00600 AT 37.2 MG/ML REMARK 280 AGAINST JCSG+ SCREEN CONDITION E2. 0.2 M NACL, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, 2 M AMMONIUM SULFATE WITH 25% ETHYLENE GLYCOL REMARK 280 AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 215891E2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 48.11000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 83.32896 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -48.11000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 83.32896 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 166.65793 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.15000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 378 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 THR A 222 REMARK 465 ALA A 223 REMARK 465 GLN A 224 REMARK 465 ALA A 225 REMARK 465 GLY A 226 REMARK 465 ALA A 227 REMARK 465 ARG A 228 REMARK 465 ARG A 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPO A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 233 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYSMA.00663.A RELATED DB: TARGETDB DBREF 3R20 A 3 229 UNP A0QYQ0 A0QYQ0_MYCS2 2 228 SEQADV 3R20 GLY A -3 UNP A0QYQ0 EXPRESSION TAG SEQADV 3R20 PRO A -2 UNP A0QYQ0 EXPRESSION TAG SEQADV 3R20 GLY A -1 UNP A0QYQ0 EXPRESSION TAG SEQADV 3R20 SER A 0 UNP A0QYQ0 EXPRESSION TAG SEQADV 3R20 MET A 1 UNP A0QYQ0 EXPRESSION TAG SEQADV 3R20 VAL A 2 UNP A0QYQ0 EXPRESSION TAG SEQRES 1 A 233 GLY PRO GLY SER MET VAL SER GLY SER LEU VAL VAL ALA SEQRES 2 A 233 VAL ASP GLY PRO ALA GLY THR GLY LYS SER SER VAL SER SEQRES 3 A 233 ARG GLY LEU ALA ARG ALA LEU GLY ALA ARG TYR LEU ASP SEQRES 4 A 233 THR GLY ALA MET TYR ARG ILE ALA THR LEU ALA VAL LEU SEQRES 5 A 233 ARG ALA GLY ALA ASP LEU THR ASP PRO ALA ALA ILE GLU SEQRES 6 A 233 LYS ALA ALA ALA ASP ALA GLU ILE GLY VAL GLY SER ASP SEQRES 7 A 233 PRO ASP VAL ASP ALA ALA PHE LEU ALA GLY GLU ASP VAL SEQRES 8 A 233 SER SER GLU ILE ARG GLY ASP ALA VAL THR GLY ALA VAL SEQRES 9 A 233 SER ALA VAL SER ALA VAL PRO ALA VAL ARG THR ARG LEU SEQRES 10 A 233 VAL ASP ILE GLN ARG LYS LEU ALA THR GLU GLY GLY ARG SEQRES 11 A 233 VAL VAL VAL GLU GLY ARG ASP ILE GLY THR VAL VAL LEU SEQRES 12 A 233 PRO ASP ALA ASP VAL LYS ILE PHE LEU THR ALA SER ALA SEQRES 13 A 233 GLU GLU ARG ALA ARG ARG ARG ASN ALA GLN ASN VAL ALA SEQRES 14 A 233 ASN GLY LEU PRO ASP ASP TYR ALA THR VAL LEU ALA ASP SEQRES 15 A 233 VAL GLN ARG ARG ASP HIS LEU ASP SER THR ARG PRO VAL SEQRES 16 A 233 SER PRO LEU ARG ALA ALA ASP ASP ALA LEU VAL VAL ASP SEQRES 17 A 233 THR SER ASP MET ASP GLN ALA GLN VAL ILE ALA HIS LEU SEQRES 18 A 233 LEU ASP LEU VAL THR ALA GLN ALA GLY ALA ARG ARG HET DPO A 230 9 HET EDO A 231 4 HET CL A 232 1 HET SO4 A 233 5 HETNAM DPO DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DPO O7 P2 4- FORMUL 3 EDO C2 H6 O2 FORMUL 4 CL CL 1- FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *207(H2 O) HELIX 1 1 GLY A 17 GLY A 30 1 14 HELIX 2 2 THR A 36 GLY A 51 1 16 HELIX 3 3 ASP A 56 ASP A 66 1 11 HELIX 4 4 SER A 89 ARG A 92 5 4 HELIX 5 5 GLY A 93 ALA A 105 1 13 HELIX 6 6 VAL A 106 THR A 122 1 17 HELIX 7 7 SER A 151 ASN A 166 1 16 HELIX 8 8 ASP A 171 ARG A 189 1 19 HELIX 9 9 ASP A 209 VAL A 221 1 13 SHEET 1 A 5 ARG A 32 ASP A 35 0 SHEET 2 A 5 VAL A 127 GLY A 131 1 O VAL A 128 N LEU A 34 SHEET 3 A 5 VAL A 7 ASP A 11 1 N VAL A 8 O VAL A 129 SHEET 4 A 5 VAL A 144 THR A 149 1 O LEU A 148 N ASP A 11 SHEET 5 A 5 LEU A 201 ASP A 204 1 O LEU A 201 N PHE A 147 SHEET 1 B 3 ILE A 69 VAL A 71 0 SHEET 2 B 3 ALA A 80 LEU A 82 -1 O PHE A 81 N GLY A 70 SHEET 3 B 3 GLU A 85 ASP A 86 -1 O GLU A 85 N LEU A 82 SITE 1 AC1 13 PRO A 13 ALA A 14 GLY A 15 THR A 16 SITE 2 AC1 13 GLY A 17 LYS A 18 SER A 19 SER A 20 SITE 3 AC1 13 ARG A 158 GLN A 162 HOH A 296 HOH A 410 SITE 4 AC1 13 HOH A 411 SITE 1 AC2 7 ARG A 23 ASP A 35 VAL A 77 ASP A 78 SITE 2 AC2 7 ALA A 79 ARG A 92 HOH A 266 SITE 1 AC3 3 ARG A 181 HIS A 184 HOH A 426 CRYST1 96.220 96.220 43.150 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010393 0.006000 0.000000 0.00000 SCALE2 0.000000 0.012001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023175 0.00000