HEADER OXIDOREDUCTASE 15-MAR-11 3R31 TITLE CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETAINE ALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BADH; COMPND 5 EC: 1.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: BETB, ATU0829, AGR_C_1515; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, BETAINE ALDEHYDE DEHYDROGENASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.C.ALMO,S.SWAMINATHAN,NEW YORK STRUCTURAL GENOMICS AUTHOR 2 RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 21-FEB-24 3R31 1 REMARK SEQADV REVDAT 2 08-NOV-17 3R31 1 REMARK REVDAT 1 06-APR-11 3R31 0 JRNL AUTH R.AGARWAL,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3769 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7286 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9892 ; 1.943 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 962 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 291 ;39.933 ;24.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1148 ;18.734 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;23.690 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1120 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5541 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4770 ; 1.073 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7605 ; 1.923 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2516 ; 3.465 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2287 ; 5.282 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9891 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.148 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.70 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M BIS-TRIS PH 6.5, 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.19267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.38533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 116.38533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.19267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 THR A 7 REMARK 465 LYS A 490 REMARK 465 VAL A 491 REMARK 465 ASP A 492 REMARK 465 ALA A 493 REMARK 465 PRO A 494 REMARK 465 TYR A 495 REMARK 465 ALA A 496 REMARK 465 GLU A 497 REMARK 465 ASN A 498 REMARK 465 LEU A 499 REMARK 465 TYR A 500 REMARK 465 PHE A 501 REMARK 465 GLN A 502 REMARK 465 SER A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 TRP A 510 REMARK 465 SER A 511 REMARK 465 HIS A 512 REMARK 465 PRO A 513 REMARK 465 GLN A 514 REMARK 465 PHE A 515 REMARK 465 GLU A 516 REMARK 465 LYS A 517 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 ILE B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 LYS B 490 REMARK 465 VAL B 491 REMARK 465 ASP B 492 REMARK 465 ALA B 493 REMARK 465 PRO B 494 REMARK 465 TYR B 495 REMARK 465 ALA B 496 REMARK 465 GLU B 497 REMARK 465 ASN B 498 REMARK 465 LEU B 499 REMARK 465 TYR B 500 REMARK 465 PHE B 501 REMARK 465 GLN B 502 REMARK 465 SER B 503 REMARK 465 HIS B 504 REMARK 465 HIS B 505 REMARK 465 HIS B 506 REMARK 465 HIS B 507 REMARK 465 HIS B 508 REMARK 465 HIS B 509 REMARK 465 TRP B 510 REMARK 465 SER B 511 REMARK 465 HIS B 512 REMARK 465 PRO B 513 REMARK 465 GLN B 514 REMARK 465 PHE B 515 REMARK 465 GLU B 516 REMARK 465 LYS B 517 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 287 CB OG REMARK 470 SER A 293 OG REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 SER B 287 CB OG REMARK 470 SER B 293 OG REMARK 470 LYS B 349 CG CD CE NZ REMARK 470 ILE B 388 CG1 CG2 CD1 REMARK 470 ARG B 390 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 391 CG CD OE1 OE2 REMARK 470 GLU B 392 CG CD OE1 OE2 REMARK 470 PHE B 394 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 -82.38 -113.21 REMARK 500 PHE A 285 -85.86 -112.58 REMARK 500 SER A 288 -142.32 -147.59 REMARK 500 GLU A 341 -72.13 -45.20 REMARK 500 LYS A 462 -130.89 65.59 REMARK 500 ASN A 470 169.95 66.74 REMARK 500 SER A 471 171.35 61.24 REMARK 500 ASP B 113 -87.01 -104.89 REMARK 500 ASP B 216 -165.26 -122.56 REMARK 500 PHE B 285 -85.52 -114.09 REMARK 500 TYR B 286 47.88 -74.15 REMARK 500 ASP B 404 -60.46 -107.22 REMARK 500 LYS B 462 -135.14 58.77 REMARK 500 ASN B 470 172.43 63.72 REMARK 500 SER B 471 170.68 58.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-000191 RELATED DB: TARGETDB DBREF 3R31 A 3 495 UNP Q8UH56 BETB_AGRT5 1 493 DBREF 3R31 B 3 495 UNP Q8UH56 BETB_AGRT5 1 493 SEQADV 3R31 MET A 1 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 VAL A 2 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 ALA A 496 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLU A 497 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 ASN A 498 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 LEU A 499 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 TYR A 500 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 PHE A 501 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLN A 502 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 SER A 503 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS A 504 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS A 505 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS A 506 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS A 507 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS A 508 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS A 509 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 TRP A 510 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 SER A 511 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS A 512 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 PRO A 513 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLN A 514 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 PHE A 515 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLU A 516 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 LYS A 517 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 MET B 1 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 VAL B 2 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 ALA B 496 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLU B 497 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 ASN B 498 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 LEU B 499 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 TYR B 500 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 PHE B 501 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLN B 502 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 SER B 503 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS B 504 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS B 505 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS B 506 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS B 507 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS B 508 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS B 509 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 TRP B 510 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 SER B 511 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 HIS B 512 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 PRO B 513 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLN B 514 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 PHE B 515 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 GLU B 516 UNP Q8UH56 EXPRESSION TAG SEQADV 3R31 LYS B 517 UNP Q8UH56 EXPRESSION TAG SEQRES 1 A 517 MET VAL MET THR ILE ALA THR PRO LEU LYS ALA GLN PRO SEQRES 2 A 517 LYS ALA SER HIS PHE ILE ASP GLY ASP TYR VAL GLU ASP SEQRES 3 A 517 ASN THR GLY THR PRO PHE GLU SER ILE PHE PRO ALA THR SEQRES 4 A 517 GLY GLU MET ILE ALA LYS LEU HIS ALA ALA THR PRO ALA SEQRES 5 A 517 ILE VAL GLU ARG ALA ILE ALA SER ALA LYS ARG ALA GLN SEQRES 6 A 517 LYS GLU TRP ALA ALA MET SER PRO MET ALA ARG GLY ARG SEQRES 7 A 517 ILE LEU LYS ARG ALA ALA ASP ILE MET ARG GLU ARG ASN SEQRES 8 A 517 ASP ALA LEU SER THR LEU GLU THR LEU ASP THR GLY LYS SEQRES 9 A 517 PRO ILE GLN GLU THR ILE VAL ALA ASP PRO THR SER GLY SEQRES 10 A 517 ALA ASP ALA PHE GLU PHE PHE GLY GLY ILE ALA PRO SER SEQRES 11 A 517 ALA LEU ASN GLY ASP TYR ILE PRO LEU GLY GLY ASP PHE SEQRES 12 A 517 ALA TYR THR LYS ARG VAL PRO LEU GLY VAL CYS VAL GLY SEQRES 13 A 517 ILE GLY ALA TRP ASN TYR PRO GLN GLN ILE ALA CYS TRP SEQRES 14 A 517 LYS ALA ALA PRO ALA LEU VAL ALA GLY ASN ALA MET VAL SEQRES 15 A 517 PHE LYS PRO SER GLU ASN THR PRO LEU GLY ALA LEU LYS SEQRES 16 A 517 ILE ALA GLU ILE LEU ILE GLU ALA GLY LEU PRO LYS GLY SEQRES 17 A 517 LEU PHE ASN VAL ILE GLN GLY ASP ARG ASP THR GLY PRO SEQRES 18 A 517 LEU LEU VAL ASN HIS PRO ASP VAL ALA LYS VAL SER LEU SEQRES 19 A 517 THR GLY SER VAL PRO THR GLY ARG LYS VAL ALA ALA ALA SEQRES 20 A 517 ALA ALA GLY HIS LEU LYS HIS VAL THR MET GLU LEU GLY SEQRES 21 A 517 GLY LYS SER PRO MET ILE VAL PHE ASP ASP ALA ASP ILE SEQRES 22 A 517 GLU SER ALA VAL GLY GLY ALA MET LEU GLY ASN PHE TYR SEQRES 23 A 517 SER SER GLY GLN VAL CYS SER ASN GLY THR ARG VAL PHE SEQRES 24 A 517 VAL GLN LYS LYS ALA LYS ALA ARG PHE LEU GLU ASN LEU SEQRES 25 A 517 LYS ARG ARG THR GLU ALA MET ILE LEU GLY ASP PRO LEU SEQRES 26 A 517 ASP TYR ALA THR HIS LEU GLY PRO LEU VAL SER LYS ALA SEQRES 27 A 517 GLN GLN GLU LYS VAL LEU SER TYR ILE GLU LYS GLY LYS SEQRES 28 A 517 ALA GLU GLY ALA THR LEU ILE THR GLY GLY GLY ILE PRO SEQRES 29 A 517 ASN ASN VAL ALA GLY GLU GLY ALA TYR VAL GLN PRO THR SEQRES 30 A 517 VAL PHE ALA ASP VAL THR ASP ASP MET THR ILE ALA ARG SEQRES 31 A 517 GLU GLU ILE PHE GLY PRO VAL MET CYS VAL LEU ASP PHE SEQRES 32 A 517 ASP ASP GLU ASP GLU VAL LEU ALA ARG ALA ASN ALA THR SEQRES 33 A 517 GLU PHE GLY LEU ALA GLY GLY VAL PHE THR ALA ASP LEU SEQRES 34 A 517 ALA ARG ALA HIS ARG VAL VAL ASP GLY LEU GLU ALA GLY SEQRES 35 A 517 THR LEU TRP ILE ASN THR TYR ASN LEU CYS PRO VAL GLU SEQRES 36 A 517 ILE PRO PHE GLY GLY SER LYS GLN SER GLY PHE GLY ARG SEQRES 37 A 517 GLU ASN SER ALA ALA ALA LEU GLU HIS TYR SER GLU LEU SEQRES 38 A 517 LYS THR VAL TYR VAL SER THR GLY LYS VAL ASP ALA PRO SEQRES 39 A 517 TYR ALA GLU ASN LEU TYR PHE GLN SER HIS HIS HIS HIS SEQRES 40 A 517 HIS HIS TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 517 MET VAL MET THR ILE ALA THR PRO LEU LYS ALA GLN PRO SEQRES 2 B 517 LYS ALA SER HIS PHE ILE ASP GLY ASP TYR VAL GLU ASP SEQRES 3 B 517 ASN THR GLY THR PRO PHE GLU SER ILE PHE PRO ALA THR SEQRES 4 B 517 GLY GLU MET ILE ALA LYS LEU HIS ALA ALA THR PRO ALA SEQRES 5 B 517 ILE VAL GLU ARG ALA ILE ALA SER ALA LYS ARG ALA GLN SEQRES 6 B 517 LYS GLU TRP ALA ALA MET SER PRO MET ALA ARG GLY ARG SEQRES 7 B 517 ILE LEU LYS ARG ALA ALA ASP ILE MET ARG GLU ARG ASN SEQRES 8 B 517 ASP ALA LEU SER THR LEU GLU THR LEU ASP THR GLY LYS SEQRES 9 B 517 PRO ILE GLN GLU THR ILE VAL ALA ASP PRO THR SER GLY SEQRES 10 B 517 ALA ASP ALA PHE GLU PHE PHE GLY GLY ILE ALA PRO SER SEQRES 11 B 517 ALA LEU ASN GLY ASP TYR ILE PRO LEU GLY GLY ASP PHE SEQRES 12 B 517 ALA TYR THR LYS ARG VAL PRO LEU GLY VAL CYS VAL GLY SEQRES 13 B 517 ILE GLY ALA TRP ASN TYR PRO GLN GLN ILE ALA CYS TRP SEQRES 14 B 517 LYS ALA ALA PRO ALA LEU VAL ALA GLY ASN ALA MET VAL SEQRES 15 B 517 PHE LYS PRO SER GLU ASN THR PRO LEU GLY ALA LEU LYS SEQRES 16 B 517 ILE ALA GLU ILE LEU ILE GLU ALA GLY LEU PRO LYS GLY SEQRES 17 B 517 LEU PHE ASN VAL ILE GLN GLY ASP ARG ASP THR GLY PRO SEQRES 18 B 517 LEU LEU VAL ASN HIS PRO ASP VAL ALA LYS VAL SER LEU SEQRES 19 B 517 THR GLY SER VAL PRO THR GLY ARG LYS VAL ALA ALA ALA SEQRES 20 B 517 ALA ALA GLY HIS LEU LYS HIS VAL THR MET GLU LEU GLY SEQRES 21 B 517 GLY LYS SER PRO MET ILE VAL PHE ASP ASP ALA ASP ILE SEQRES 22 B 517 GLU SER ALA VAL GLY GLY ALA MET LEU GLY ASN PHE TYR SEQRES 23 B 517 SER SER GLY GLN VAL CYS SER ASN GLY THR ARG VAL PHE SEQRES 24 B 517 VAL GLN LYS LYS ALA LYS ALA ARG PHE LEU GLU ASN LEU SEQRES 25 B 517 LYS ARG ARG THR GLU ALA MET ILE LEU GLY ASP PRO LEU SEQRES 26 B 517 ASP TYR ALA THR HIS LEU GLY PRO LEU VAL SER LYS ALA SEQRES 27 B 517 GLN GLN GLU LYS VAL LEU SER TYR ILE GLU LYS GLY LYS SEQRES 28 B 517 ALA GLU GLY ALA THR LEU ILE THR GLY GLY GLY ILE PRO SEQRES 29 B 517 ASN ASN VAL ALA GLY GLU GLY ALA TYR VAL GLN PRO THR SEQRES 30 B 517 VAL PHE ALA ASP VAL THR ASP ASP MET THR ILE ALA ARG SEQRES 31 B 517 GLU GLU ILE PHE GLY PRO VAL MET CYS VAL LEU ASP PHE SEQRES 32 B 517 ASP ASP GLU ASP GLU VAL LEU ALA ARG ALA ASN ALA THR SEQRES 33 B 517 GLU PHE GLY LEU ALA GLY GLY VAL PHE THR ALA ASP LEU SEQRES 34 B 517 ALA ARG ALA HIS ARG VAL VAL ASP GLY LEU GLU ALA GLY SEQRES 35 B 517 THR LEU TRP ILE ASN THR TYR ASN LEU CYS PRO VAL GLU SEQRES 36 B 517 ILE PRO PHE GLY GLY SER LYS GLN SER GLY PHE GLY ARG SEQRES 37 B 517 GLU ASN SER ALA ALA ALA LEU GLU HIS TYR SER GLU LEU SEQRES 38 B 517 LYS THR VAL TYR VAL SER THR GLY LYS VAL ASP ALA PRO SEQRES 39 B 517 TYR ALA GLU ASN LEU TYR PHE GLN SER HIS HIS HIS HIS SEQRES 40 B 517 HIS HIS TRP SER HIS PRO GLN PHE GLU LYS HET EDO A3318 4 HET EDO B3319 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *219(H2 O) HELIX 1 1 THR A 50 MET A 71 1 22 HELIX 2 2 SER A 72 ARG A 90 1 19 HELIX 3 3 ARG A 90 GLY A 103 1 14 HELIX 4 4 PRO A 105 ASP A 113 1 9 HELIX 5 5 ASP A 113 LEU A 132 1 20 HELIX 6 6 TYR A 162 ALA A 177 1 16 HELIX 7 7 LEU A 191 ALA A 203 1 13 HELIX 8 8 ASP A 218 ASN A 225 1 8 HELIX 9 9 SER A 237 HIS A 251 1 15 HELIX 10 10 ASP A 272 PHE A 285 1 14 HELIX 11 11 SER A 288 SER A 293 1 6 HELIX 12 12 ALA A 304 MET A 319 1 16 HELIX 13 13 SER A 336 GLY A 354 1 19 HELIX 14 14 MET A 386 GLU A 391 1 6 HELIX 15 15 ASP A 405 ALA A 415 1 11 HELIX 16 16 ASP A 428 LEU A 439 1 12 HELIX 17 17 SER A 471 HIS A 477 5 7 HELIX 18 18 THR B 50 MET B 71 1 22 HELIX 19 19 SER B 72 ARG B 90 1 19 HELIX 20 20 ARG B 90 GLY B 103 1 14 HELIX 21 21 PRO B 105 ASP B 113 1 9 HELIX 22 22 ASP B 113 LEU B 132 1 20 HELIX 23 23 TYR B 162 ALA B 177 1 16 HELIX 24 24 PRO B 190 ALA B 203 1 14 HELIX 25 25 ASP B 218 ASN B 225 1 8 HELIX 26 26 SER B 237 HIS B 251 1 15 HELIX 27 27 ASP B 272 GLY B 283 1 12 HELIX 28 28 ALA B 304 MET B 319 1 16 HELIX 29 29 SER B 336 GLU B 353 1 18 HELIX 30 30 MET B 386 GLU B 391 1 6 HELIX 31 31 ASP B 405 ALA B 415 1 11 HELIX 32 32 ASP B 428 LEU B 439 1 12 HELIX 33 33 SER B 461 GLN B 463 5 3 HELIX 34 34 SER B 471 HIS B 477 5 7 SHEET 1 A 2 HIS A 17 ILE A 19 0 SHEET 2 A 2 ASP A 22 VAL A 24 -1 O VAL A 24 N HIS A 17 SHEET 1 B 2 PRO A 31 ILE A 35 0 SHEET 2 B 2 MET A 42 HIS A 47 -1 O LEU A 46 N PHE A 32 SHEET 1 C10 TYR A 136 PRO A 138 0 SHEET 2 C10 PHE A 143 PRO A 150 -1 O ALA A 144 N ILE A 137 SHEET 3 C10 SER A 479 VAL A 486 -1 O VAL A 484 N TYR A 145 SHEET 4 C10 THR B 443 ILE B 446 1 O ILE B 446 N TYR A 485 SHEET 5 C10 ALA B 421 PHE B 425 1 N VAL B 424 O TRP B 445 SHEET 6 C10 SER B 263 VAL B 267 1 N ILE B 266 O GLY B 423 SHEET 7 C10 THR B 296 GLN B 301 1 O PHE B 299 N VAL B 267 SHEET 8 C10 VAL B 397 PHE B 403 1 O LEU B 401 N VAL B 298 SHEET 9 C10 THR B 377 VAL B 382 1 N PHE B 379 O VAL B 400 SHEET 10 C10 THR B 356 THR B 359 -1 N ILE B 358 O VAL B 378 SHEET 1 D 6 PHE A 210 VAL A 212 0 SHEET 2 D 6 ALA A 180 LYS A 184 1 N PHE A 183 O ASN A 211 SHEET 3 D 6 VAL A 153 ILE A 157 1 N GLY A 156 O LYS A 184 SHEET 4 D 6 VAL A 229 THR A 235 1 O LYS A 231 N VAL A 155 SHEET 5 D 6 HIS A 254 GLU A 258 1 O HIS A 254 N VAL A 232 SHEET 6 D 6 GLY A 465 PHE A 466 -1 O PHE A 466 N MET A 257 SHEET 1 E10 THR A 356 THR A 359 0 SHEET 2 E10 THR A 377 VAL A 382 -1 O VAL A 378 N ILE A 358 SHEET 3 E10 VAL A 397 PHE A 403 1 O MET A 398 N PHE A 379 SHEET 4 E10 THR A 296 GLN A 301 1 N VAL A 298 O LEU A 401 SHEET 5 E10 SER A 263 VAL A 267 1 N MET A 265 O PHE A 299 SHEET 6 E10 ALA A 421 PHE A 425 1 O PHE A 425 N ILE A 266 SHEET 7 E10 THR A 443 ILE A 446 1 O TRP A 445 N VAL A 424 SHEET 8 E10 SER B 479 VAL B 486 1 O THR B 483 N LEU A 444 SHEET 9 E10 PHE B 143 PRO B 150 -1 N PHE B 143 O VAL B 486 SHEET 10 E10 TYR B 136 PRO B 138 -1 N ILE B 137 O ALA B 144 SHEET 1 F 2 PHE A 418 GLY A 419 0 SHEET 2 F 2 SER A 461 LYS A 462 -1 O SER A 461 N GLY A 419 SHEET 1 G 2 HIS B 17 ILE B 19 0 SHEET 2 G 2 ASP B 22 VAL B 24 -1 O ASP B 22 N ILE B 19 SHEET 1 H 2 PRO B 31 ILE B 35 0 SHEET 2 H 2 MET B 42 HIS B 47 -1 O LEU B 46 N PHE B 32 SHEET 1 I 6 PHE B 210 VAL B 212 0 SHEET 2 I 6 ALA B 180 LYS B 184 1 N PHE B 183 O ASN B 211 SHEET 3 I 6 VAL B 153 ILE B 157 1 N GLY B 156 O LYS B 184 SHEET 4 I 6 VAL B 229 THR B 235 1 O LYS B 231 N VAL B 155 SHEET 5 I 6 HIS B 254 GLU B 258 1 O HIS B 254 N VAL B 232 SHEET 6 I 6 GLY B 465 PHE B 466 -1 O PHE B 466 N MET B 257 CISPEP 1 ASN A 365 ASN A 366 0 -3.36 CISPEP 2 ALA A 368 GLY A 369 0 16.27 CISPEP 3 GLY A 369 GLU A 370 0 19.95 CISPEP 4 ASN B 365 ASN B 366 0 -9.51 CISPEP 5 ALA B 368 GLY B 369 0 -7.06 CISPEP 6 GLY B 369 GLU B 370 0 18.72 SITE 1 AC1 5 ALA A 69 ARG A 76 ARG A 148 HOH A 569 SITE 2 AC1 5 PRO B 138 SITE 1 AC2 4 PRO A 138 ALA B 69 ARG B 76 ARG B 148 CRYST1 98.879 98.879 174.578 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010113 0.005839 0.000000 0.00000 SCALE2 0.000000 0.011678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005728 0.00000