HEADER TRANSFERASE 17-MAR-11 3R4T TITLE CRYSTAL STRUCTURE OF 4-AMINOBUTYRATE AMINOTRANSFERASE GABT FROM TITLE 2 MYCOBACTERIUM MARINUM COVALENTLY BOUND TO PYRIDOXAL PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-AMINOBUTYRATE AMINOTRANSFERASE GABT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: GABT, MMAR_2118; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MYCOBACTERIUM, TUBERCULOSIS, SMEGMATIS, KEYWDS 3 MARINUM, WATER CONTAMINANT, PYRIDOXAL PHOSPHATE, PLP, LLP, GAMMA KEYWDS 4 AMINO BUTYRIC ACID, GABA, GABA TRANSFERASE, GABACULINE, PHENELZINE, KEYWDS 5 AMINOOXYACETIC ACID, PHENYLETHYLIDENEHYDRAZINE, VIGABATRIN, VALPROIC KEYWDS 6 ACID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-DEC-23 3R4T 1 REMARK REVDAT 4 13-SEP-23 3R4T 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 3R4T 1 REMARK REVDAT 2 22-APR-15 3R4T 1 JRNL VERSN REVDAT 1 30-MAR-11 3R4T 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1281 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1744 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3352 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4562 ; 1.453 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;37.899 ;23.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;14.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;12.841 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2544 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2199 ; 0.541 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3514 ; 1.107 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 2.267 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1048 ; 3.874 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3727 60.8793 45.5608 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.1073 REMARK 3 T33: 0.0526 T12: 0.0351 REMARK 3 T13: -0.0360 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.2418 L22: 1.1112 REMARK 3 L33: 1.2274 L12: -0.9722 REMARK 3 L13: -0.4766 L23: 0.2036 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: -0.1281 S13: 0.0400 REMARK 3 S21: 0.1326 S22: 0.0368 S23: -0.0927 REMARK 3 S31: -0.0337 S32: 0.1429 S33: -0.0440 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1342 59.9578 22.3457 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.0844 REMARK 3 T33: 0.0530 T12: 0.0475 REMARK 3 T13: 0.0285 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.1943 L22: 0.3847 REMARK 3 L33: 0.3342 L12: 0.0234 REMARK 3 L13: 0.1881 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.0144 S13: -0.0443 REMARK 3 S21: -0.0764 S22: 0.0385 S23: -0.0255 REMARK 3 S31: 0.0035 S32: 0.0446 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8625 37.8317 17.7486 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.0599 REMARK 3 T33: 0.0785 T12: 0.0449 REMARK 3 T13: 0.0244 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 2.0763 L22: 1.2900 REMARK 3 L33: 1.0043 L12: -0.1607 REMARK 3 L13: 0.9887 L23: -0.7462 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.0899 S13: -0.2035 REMARK 3 S21: -0.1656 S22: 0.0942 S23: -0.1098 REMARK 3 S31: 0.0950 S32: 0.0383 S33: -0.0737 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5154 55.5088 16.7927 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.1201 REMARK 3 T33: 0.0525 T12: 0.0237 REMARK 3 T13: 0.0404 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.6476 L22: 0.4399 REMARK 3 L33: 0.4844 L12: -0.2519 REMARK 3 L13: 0.3042 L23: -0.2152 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.1105 S13: -0.0681 REMARK 3 S21: -0.1412 S22: 0.0251 S23: -0.0544 REMARK 3 S31: -0.0074 S32: 0.1151 S33: -0.0221 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1293 40.3990 36.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.1024 REMARK 3 T33: 0.0727 T12: 0.1011 REMARK 3 T13: -0.0153 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.4967 L22: 1.8326 REMARK 3 L33: 0.6510 L12: 0.5355 REMARK 3 L13: -0.2651 L23: 0.2557 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.1087 S13: -0.1704 REMARK 3 S21: 0.0638 S22: 0.1066 S23: -0.1315 REMARK 3 S31: 0.1904 S32: 0.0885 S33: -0.0705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25245 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3OKS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYMAA.01026.B.A1 PW29968 AT 27.8 MG/ML REMARK 280 AGAINST JCSG+ SCREEN CONDITION D5, 70% MPD, 0.1 M HEPES PH 7.5, REMARK 280 CRYSTAL TRACKING ID 220563D5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.06000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.53000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.06000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.53000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.06000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.53000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 105.06000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.53000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -61.81000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 107.05806 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.53000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -343.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -61.81000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 107.05806 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 52.53000 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -61.81000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 107.05806 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 52.53000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 510 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 571 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ALA A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 ALA A -8 REMARK 465 GLN A -7 REMARK 465 THR A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 445 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 44 147.91 -173.77 REMARK 500 SER A 63 43.27 36.95 REMARK 500 ILE A 65 55.39 72.23 REMARK 500 THR A 68 47.42 -90.77 REMARK 500 HIS A 90 133.58 -176.94 REMARK 500 CYS A 92 106.87 65.49 REMARK 500 VAL A 95 -73.60 -93.44 REMARK 500 ILE A 218 -55.98 -123.58 REMARK 500 PHE A 268 65.01 66.51 REMARK 500 ALA A 269 -16.44 76.01 REMARK 500 ALA A 290 -126.78 -164.58 REMARK 500 LLP A 291 -99.98 34.40 REMARK 500 ALA A 376 34.36 -99.81 REMARK 500 CYS A 412 -167.51 -164.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 451 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 27 O REMARK 620 2 HOH A 653 O 96.6 REMARK 620 3 HOH A 654 O 85.6 108.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 451 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OKS RELATED DB: PDB REMARK 900 SAME PROTEIN FROM MYCOBACTERIUM SMEGMATIS, FIRST GENE REMARK 900 RELATED ID: 3Q8N RELATED DB: PDB REMARK 900 SAME PROTEIN FROM MYCOBACTERIUM SMEGMATIS, SECOND GENE REMARK 900 RELATED ID: MYMAA.01026.B RELATED DB: TARGETDB DBREF 3R4T A 2 445 UNP B2HN70 B2HN70_MYCMM 2 445 SEQADV 3R4T MET A -21 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T ALA A -20 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T HIS A -19 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T HIS A -18 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T HIS A -17 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T HIS A -16 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T HIS A -15 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T HIS A -14 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T MET A -13 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T GLY A -12 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T THR A -11 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T LEU A -10 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T GLU A -9 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T ALA A -8 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T GLN A -7 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T THR A -6 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T GLN A -5 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T GLY A -4 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T PRO A -3 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T GLY A -2 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T SER A -1 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T MET A 0 UNP B2HN70 EXPRESSION TAG SEQADV 3R4T VAL A 1 UNP B2HN70 EXPRESSION TAG SEQRES 1 A 467 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 467 ALA GLN THR GLN GLY PRO GLY SER MET VAL ALA SER LEU SEQRES 3 A 467 ASP GLN SER ARG LEU LEU VAL THR GLU ILE PRO GLY PRO SEQRES 4 A 467 ALA SER LEU GLU LEU ASN LYS ARG ARG ALA ALA ALA VAL SEQRES 5 A 467 SER GLY GLY VAL GLY VAL THR LEU PRO VAL PHE VAL VAL SEQRES 6 A 467 ARG ALA GLY GLY GLY ILE VAL GLU ASP ALA ASP GLY ASN SEQRES 7 A 467 ARG LEU ILE ASP LEU GLY SER GLY ILE ALA VAL THR THR SEQRES 8 A 467 ILE GLY ASN SER ALA PRO ARG VAL VAL ASP ALA VAL ARG SEQRES 9 A 467 ASP GLN VAL GLU GLN PHE THR HIS THR CYS PHE MET VAL SEQRES 10 A 467 THR PRO TYR GLU GLN TYR VAL ALA VAL ALA GLU GLN LEU SEQRES 11 A 467 ASN ARG ILE THR PRO GLY SER GLY GLU LYS ARG THR VAL SEQRES 12 A 467 LEU PHE ASN SER GLY ALA GLU ALA VAL GLU ASN SER ILE SEQRES 13 A 467 LYS VAL ALA ARG ALA HIS THR ARG LYS GLN ALA VAL VAL SEQRES 14 A 467 ALA PHE ASP TYR ALA TYR HIS GLY ARG THR ASN LEU THR SEQRES 15 A 467 MET ALA LEU THR ALA LYS SER MET PRO TYR LYS SER GLY SEQRES 16 A 467 PHE GLY PRO PHE ALA PRO GLU ILE TYR ARG ALA PRO VAL SEQRES 17 A 467 SER TYR PRO TYR ARG ASP ASN LEU LEU ASP LYS ASP ILE SEQRES 18 A 467 ALA THR ASP GLY GLU LEU ALA ALA GLU ARG ALA ILE ASN SEQRES 19 A 467 LEU ILE ASP LYS GLN ILE GLY ALA ALA ASN LEU ALA ALA SEQRES 20 A 467 VAL ILE ILE GLU PRO ILE ALA GLY GLU GLY GLY PHE ILE SEQRES 21 A 467 VAL PRO ALA ASP GLY PHE LEU PRO ALA LEU GLN ARG TRP SEQRES 22 A 467 CYS ARG ASP ASN ASP VAL VAL PHE ILE ALA ASP GLU VAL SEQRES 23 A 467 GLN THR GLY PHE ALA ARG THR GLY ALA MET PHE ALA CYS SEQRES 24 A 467 ASP HIS GLU ASN VAL GLU PRO ASP LEU ILE VAL THR ALA SEQRES 25 A 467 LLP GLY ILE ALA ASP GLY PHE PRO LEU SER ALA VAL THR SEQRES 26 A 467 GLY ARG ALA GLU ILE MET ASP ALA PRO HIS THR SER GLY SEQRES 27 A 467 LEU GLY GLY THR PHE GLY GLY ASN PRO VAL ALA CYS ALA SEQRES 28 A 467 ALA ALA LEU ALA THR ILE GLU THR ILE GLU ARG ASP GLY SEQRES 29 A 467 MET VAL GLU ARG ALA ARG GLN ILE GLU ARG LEU VAL MET SEQRES 30 A 467 ASP ARG LEU LEU ARG LEU GLN ALA ALA ASP ASP ARG LEU SEQRES 31 A 467 GLY ASP VAL ARG GLY ARG GLY ALA MET ILE ALA MET GLU SEQRES 32 A 467 LEU VAL LYS SER GLY THR ALA GLU PRO ASP ALA ALA LEU SEQRES 33 A 467 THR GLN LYS LEU ALA ALA ALA ALA HIS ALA ALA GLY VAL SEQRES 34 A 467 ILE VAL LEU THR CYS GLY MET PHE GLY ASN VAL ILE ARG SEQRES 35 A 467 LEU LEU PRO PRO LEU THR ILE SER ASP GLU LEU LEU SER SEQRES 36 A 467 GLU GLY LEU ASP ILE LEU CYS GLN ILE LEU ALA ASP MODRES 3R4T LLP A 291 LYS HET LLP A 291 24 HET MPD A 446 8 HET CL A 447 1 HET CL A 448 1 HET CL A 449 1 HET CL A 450 1 HET NA A 451 1 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 MPD C6 H14 O2 FORMUL 3 CL 4(CL 1-) FORMUL 7 NA NA 1+ FORMUL 8 HOH *206(H2 O) HELIX 1 1 GLY A 16 VAL A 30 1 15 HELIX 2 2 GLY A 62 VAL A 67 1 6 HELIX 3 3 ALA A 74 PHE A 88 1 15 HELIX 4 4 TYR A 98 THR A 112 1 15 HELIX 5 5 SER A 125 ARG A 142 1 18 HELIX 6 6 THR A 157 THR A 164 1 8 HELIX 7 7 TYR A 188 ASN A 193 1 6 HELIX 8 8 ASP A 196 ASP A 202 1 7 HELIX 9 9 ASP A 202 ILE A 218 1 17 HELIX 10 10 GLY A 219 ALA A 221 5 3 HELIX 11 11 GLY A 243 ASN A 255 1 13 HELIX 12 12 PHE A 275 ASN A 281 5 7 HELIX 13 13 ALA A 290 ASP A 295 5 6 HELIX 14 14 ALA A 306 ASP A 310 1 5 HELIX 15 15 ASN A 324 ASP A 341 1 18 HELIX 16 16 GLY A 342 ASP A 365 1 24 HELIX 17 17 ASP A 391 ALA A 405 1 15 HELIX 18 18 SER A 428 ASP A 445 1 18 SHEET 1 A 4 VAL A 42 GLY A 46 0 SHEET 2 A 4 ILE A 49 ASP A 52 -1 O GLU A 51 N ARG A 44 SHEET 3 A 4 ARG A 57 ASP A 60 -1 O LEU A 58 N VAL A 50 SHEET 4 A 4 VAL A 407 ILE A 408 1 O ILE A 408 N ILE A 59 SHEET 1 B 7 LYS A 118 PHE A 123 0 SHEET 2 B 7 SER A 300 ARG A 305 -1 O SER A 300 N PHE A 123 SHEET 3 B 7 LEU A 286 THR A 289 -1 N ILE A 287 O THR A 303 SHEET 4 B 7 VAL A 258 ASP A 262 1 N ALA A 261 O VAL A 288 SHEET 5 B 7 LEU A 223 ILE A 228 1 N VAL A 226 O ILE A 260 SHEET 6 B 7 ALA A 145 PHE A 149 1 N VAL A 147 O ILE A 227 SHEET 7 B 7 ILE A 181 ALA A 184 1 O TYR A 182 N VAL A 146 SHEET 1 C 4 LEU A 368 ARG A 374 0 SHEET 2 C 4 MET A 377 LEU A 382 -1 O ALA A 379 N ARG A 372 SHEET 3 C 4 VAL A 418 LEU A 421 -1 O LEU A 421 N ILE A 378 SHEET 4 C 4 LEU A 410 CYS A 412 -1 N LEU A 410 O ARG A 420 LINK C ALA A 290 N LLP A 291 1555 1555 1.34 LINK C LLP A 291 N GLY A 292 1555 1555 1.34 LINK O ALA A 27 NA NA A 451 1555 1555 2.61 LINK NA NA A 451 O HOH A 653 1555 1555 2.49 LINK NA NA A 451 O HOH A 654 1555 1555 2.46 CISPEP 1 ILE A 14 PRO A 15 0 -0.02 CISPEP 2 MET A 168 PRO A 169 0 -0.15 CISPEP 3 GLY A 175 PRO A 176 0 12.04 SITE 1 AC1 4 SER A 172 ASN A 222 ALA A 311 HIS A 313 SITE 1 AC2 3 MET A 94 TYR A 153 ARG A 156 SITE 1 AC3 1 LEU A 10 SITE 1 AC4 1 ARG A 352 SITE 1 AC5 5 ALA A 27 HOH A 471 HOH A 537 HOH A 653 SITE 2 AC5 5 HOH A 654 CRYST1 123.620 123.620 157.590 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008089 0.004670 0.000000 0.00000 SCALE2 0.000000 0.009341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006346 0.00000