data_3R5P # _entry.id 3R5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R5P pdb_00003r5p 10.2210/pdb3r5p/pdb RCSB RCSB064521 ? ? WWPDB D_1000064521 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3R5L 'The same protein crystallized in a different space group' unspecified PDB 3R5R 'same protein with co-factor' unspecified PDB 3R5W 'same protein with co-factor' unspecified PDB 3R5Y 'homologous protein from N. farcinica' unspecified PDB 3R5Z 'homologous protein from N. farcinica' unspecified # _pdbx_database_status.entry_id 3R5P _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-19 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cellitti, S.E.' 1 'Shaffer, J.' 2 'Jones, D.H.' 3 'Mukherjee, T.' 4 'Gurumurthy, M.' 5 'Bursulaya, B.' 6 'Boshoff, H.I.M.' 7 'Choi, I.' 8 'Nayya, A.' 9 'Lee, Y.S.' 10 'Cherian, J.' 11 'Niyomrattanakit, P.' 12 'Dick, T.' 13 'Manjunatha, U.H.' 14 'Barry, C.E.' 15 'Spraggon, G.' 16 'Geierstanger, B.H.' 17 # _citation.id primary _citation.title ;Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. ; _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 101 _citation.page_last 112 _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22244759 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.11.001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cellitti, S.E.' 1 ? primary 'Shaffer, J.' 2 ? primary 'Jones, D.H.' 3 ? primary 'Mukherjee, T.' 4 ? primary 'Gurumurthy, M.' 5 ? primary 'Bursulaya, B.' 6 ? primary 'Boshoff, H.I.' 7 ? primary 'Choi, I.' 8 ? primary 'Nayyar, A.' 9 ? primary 'Lee, Y.S.' 10 ? primary 'Cherian, J.' 11 ? primary 'Niyomrattanakit, P.' 12 ? primary 'Dick, T.' 13 ? primary 'Manjunatha, U.H.' 14 ? primary 'Barry, C.E.' 15 ? primary 'Spraggon, G.' 16 ? primary 'Geierstanger, B.H.' 17 ? # _cell.length_a 96.176 _cell.length_b 96.176 _cell.length_c 33.704 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3R5P _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3R5P _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Deazaflavin-dependent nitroreductase' 13364.905 1 1.-.-.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNP(MSE)WYLNLKANPKVQVQIKKEVLDL TARDATDEERAEYWPQLVT(MSE)YPSYQDYQSWTDRTIPIVVCEP ; _entity_poly.pdbx_seq_one_letter_code_can ;GEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARD ATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 GLY n 1 4 LEU n 1 5 GLY n 1 6 GLY n 1 7 THR n 1 8 PHE n 1 9 GLN n 1 10 LYS n 1 11 ILE n 1 12 PRO n 1 13 VAL n 1 14 ALA n 1 15 LEU n 1 16 LEU n 1 17 THR n 1 18 THR n 1 19 THR n 1 20 GLY n 1 21 ARG n 1 22 LYS n 1 23 THR n 1 24 GLY n 1 25 GLN n 1 26 PRO n 1 27 ARG n 1 28 VAL n 1 29 ASN n 1 30 PRO n 1 31 LEU n 1 32 TYR n 1 33 PHE n 1 34 LEU n 1 35 ARG n 1 36 ASP n 1 37 GLY n 1 38 GLY n 1 39 ARG n 1 40 VAL n 1 41 ILE n 1 42 VAL n 1 43 ALA n 1 44 ALA n 1 45 SER n 1 46 LYS n 1 47 GLY n 1 48 GLY n 1 49 ALA n 1 50 GLU n 1 51 LYS n 1 52 ASN n 1 53 PRO n 1 54 MSE n 1 55 TRP n 1 56 TYR n 1 57 LEU n 1 58 ASN n 1 59 LEU n 1 60 LYS n 1 61 ALA n 1 62 ASN n 1 63 PRO n 1 64 LYS n 1 65 VAL n 1 66 GLN n 1 67 VAL n 1 68 GLN n 1 69 ILE n 1 70 LYS n 1 71 LYS n 1 72 GLU n 1 73 VAL n 1 74 LEU n 1 75 ASP n 1 76 LEU n 1 77 THR n 1 78 ALA n 1 79 ARG n 1 80 ASP n 1 81 ALA n 1 82 THR n 1 83 ASP n 1 84 GLU n 1 85 GLU n 1 86 ARG n 1 87 ALA n 1 88 GLU n 1 89 TYR n 1 90 TRP n 1 91 PRO n 1 92 GLN n 1 93 LEU n 1 94 VAL n 1 95 THR n 1 96 MSE n 1 97 TYR n 1 98 PRO n 1 99 SER n 1 100 TYR n 1 101 GLN n 1 102 ASP n 1 103 TYR n 1 104 GLN n 1 105 SER n 1 106 TRP n 1 107 THR n 1 108 ASP n 1 109 ARG n 1 110 THR n 1 111 ILE n 1 112 PRO n 1 113 ILE n 1 114 VAL n 1 115 VAL n 1 116 CYS n 1 117 GLU n 1 118 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ddn, MT3651, Rv3547' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DDN_MYCTU _struct_ref.pdbx_db_accession P71854 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARD ATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R5P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P71854 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 34 _struct_ref_seq.pdbx_auth_seq_align_end 151 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3R5P _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.6M (NH4)2SO4, 0.1M Citric acid, pH 4.0, vapor diffusion, sitting drop, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-04-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Single crystal, cylindrically bent, Si(220)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.976 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.3' _diffrn_source.pdbx_wavelength_list 0.976 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.3 # _reflns.entry_id 3R5P _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 50.000 _reflns.number_obs 15215 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.pdbx_chi_squared 0.884 _reflns.pdbx_redundancy 5.100 _reflns.percent_possible_obs 97.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 15215 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.850 1.920 ? ? ? 0.572 1.214 ? 0.518 3.600 ? 1238 81.600 1 1 1.920 1.990 ? ? ? 0.490 1.880 ? 0.563 4.200 ? 1508 96.800 2 1 1.990 2.080 ? ? ? 0.419 2.818 ? 0.568 5.100 ? 1527 100.000 3 1 2.080 2.190 ? ? ? 0.321 4.095 ? 0.634 5.500 ? 1528 100.000 4 1 2.190 2.330 ? ? ? 0.255 5.350 ? 0.656 5.500 ? 1548 100.000 5 1 2.330 2.510 ? ? ? 0.198 7.211 ? 0.690 5.500 ? 1534 100.000 6 1 2.510 2.760 ? ? ? 0.141 10.389 ? 0.713 5.500 ? 1564 100.000 7 1 2.760 3.160 ? ? ? 0.106 16.368 ? 1.035 5.500 ? 1558 100.000 8 1 3.160 3.990 ? ? ? 0.082 29.043 ? 1.907 5.400 ? 1568 100.000 9 1 3.990 50.000 ? ? ? 0.043 40.792 ? 1.242 5.300 ? 1642 100.000 10 1 # _refine.entry_id 3R5P _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 41.6450 _refine.pdbx_ls_sigma_F 0.160 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.3600 _refine.ls_number_reflns_obs 14350 _refine.ls_number_reflns_all 14356 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1727 _refine.ls_R_factor_R_work 0.1711 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2027 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0300 _refine.ls_number_reflns_R_free 722 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.6311 _refine.solvent_model_param_bsol 52.4770 _refine.solvent_model_param_ksol 0.3930 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 3.1752 _refine.aniso_B[2][2] 3.1752 _refine.aniso_B[3][3] -6.3505 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 3R5L (preliminary model used for MR)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'CCP4 monomer library' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 82.330 _refine.B_iso_min 9.010 _refine.occupancy_max 1.000 _refine.occupancy_min 0.440 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error 19.06 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 905 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1023 _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 41.6450 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 961 0.018 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1315 1.747 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 145 0.136 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 167 0.009 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 365 18.227 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.85 1.9925 5 75.0000 2191 . 0.2236 0.2752 . 118 . 2309 2191 . 'X-RAY DIFFRACTION' 1.9925 2.1930 5 92.0000 2646 . 0.1747 0.2243 . 160 . 2806 2646 . 'X-RAY DIFFRACTION' 2.1930 2.5103 5 97.0000 2825 . 0.1659 0.2111 . 153 . 2978 2825 . 'X-RAY DIFFRACTION' 2.5103 3.1625 5 98.0000 2927 . 0.1629 0.1900 . 140 . 3067 2927 . 'X-RAY DIFFRACTION' 3.1625 41.6560 5 100.0000 3039 . 0.1656 0.1831 . 151 . 3190 3039 . 'X-RAY DIFFRACTION' # _struct.entry_id 3R5P _struct.title ;Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R5P _struct_keywords.text 'PA-824, split barrel-like fold, DUF385, Deazaflavin-dependent nitroreductase, nitroimidazoles, OXIDOREDUCTASE' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 53 ? ASN A 62 ? PRO A 86 ASN A 95 1 ? 10 HELX_P HELX_P2 2 THR A 82 ? TYR A 97 ? THR A 115 TYR A 130 1 ? 16 HELX_P HELX_P3 3 PRO A 98 ? TYR A 103 ? PRO A 131 TYR A 136 5 ? 6 HELX_P HELX_P4 4 GLN A 104 ? THR A 110 ? GLN A 137 THR A 143 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 53 C ? ? ? 1_555 A MSE 54 N ? ? A PRO 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A MSE 54 C ? ? ? 1_555 A TRP 55 N ? ? A MSE 87 A TRP 88 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A THR 95 C ? ? ? 1_555 A MSE 96 N ? ? A THR 128 A MSE 129 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale4 covale both ? A MSE 96 C ? ? ? 1_555 A TYR 97 N ? ? A MSE 129 A TYR 130 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 14 ? THR A 19 ? ALA A 47 THR A 52 A 2 PRO A 26 ? ASP A 36 ? PRO A 59 ASP A 69 A 3 ARG A 39 ? ALA A 43 ? ARG A 72 ALA A 76 A 4 ILE A 113 ? GLU A 117 ? ILE A 146 GLU A 150 A 5 GLU A 72 ? ASP A 80 ? GLU A 105 ASP A 113 A 6 LYS A 64 ? ILE A 69 ? LYS A 97 ILE A 102 A 7 ALA A 14 ? THR A 19 ? ALA A 47 THR A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 14 ? N ALA A 47 O LEU A 31 ? O LEU A 64 A 2 3 N LEU A 34 ? N LEU A 67 O ILE A 41 ? O ILE A 74 A 3 4 N VAL A 40 ? N VAL A 73 O CYS A 116 ? O CYS A 149 A 4 5 O VAL A 115 ? O VAL A 148 N ARG A 79 ? N ARG A 112 A 5 6 O LEU A 74 ? O LEU A 107 N VAL A 67 ? N VAL A 100 A 6 7 O GLN A 66 ? O GLN A 99 N THR A 17 ? N THR A 50 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 6 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software A SO4 202 ? 4 'BINDING SITE FOR RESIDUE SO4 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 20 ? GLY A 53 . ? 1_555 ? 2 AC1 6 ARG A 21 ? ARG A 54 . ? 1_555 ? 3 AC1 6 LYS A 22 ? LYS A 55 . ? 1_555 ? 4 AC1 6 THR A 23 ? THR A 56 . ? 1_555 ? 5 AC1 6 ARG A 27 ? ARG A 60 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 403 . ? 1_555 ? 7 AC2 4 ASN A 29 ? ASN A 62 . ? 1_555 ? 8 AC2 4 PRO A 53 ? PRO A 86 . ? 1_555 ? 9 AC2 4 MSE A 54 ? MSE A 87 . ? 1_555 ? 10 AC2 4 TRP A 55 ? TRP A 88 . ? 1_555 ? # _atom_sites.entry_id 3R5P _atom_sites.fract_transf_matrix[1][1] 0.010398 _atom_sites.fract_transf_matrix[1][2] 0.006003 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012006 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029670 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 34 ? ? ? A . n A 1 2 GLU 2 35 ? ? ? A . n A 1 3 GLY 3 36 ? ? ? A . n A 1 4 LEU 4 37 ? ? ? A . n A 1 5 GLY 5 38 ? ? ? A . n A 1 6 GLY 6 39 39 GLY GLY A . n A 1 7 THR 7 40 40 THR THR A . n A 1 8 PHE 8 41 41 PHE PHE A . n A 1 9 GLN 9 42 42 GLN GLN A . n A 1 10 LYS 10 43 43 LYS LYS A . n A 1 11 ILE 11 44 44 ILE ILE A . n A 1 12 PRO 12 45 45 PRO PRO A . n A 1 13 VAL 13 46 46 VAL VAL A . n A 1 14 ALA 14 47 47 ALA ALA A . n A 1 15 LEU 15 48 48 LEU LEU A . n A 1 16 LEU 16 49 49 LEU LEU A . n A 1 17 THR 17 50 50 THR THR A . n A 1 18 THR 18 51 51 THR THR A . n A 1 19 THR 19 52 52 THR THR A . n A 1 20 GLY 20 53 53 GLY GLY A . n A 1 21 ARG 21 54 54 ARG ARG A . n A 1 22 LYS 22 55 55 LYS LYS A . n A 1 23 THR 23 56 56 THR THR A . n A 1 24 GLY 24 57 57 GLY GLY A . n A 1 25 GLN 25 58 58 GLN GLN A . n A 1 26 PRO 26 59 59 PRO PRO A . n A 1 27 ARG 27 60 60 ARG ARG A . n A 1 28 VAL 28 61 61 VAL VAL A . n A 1 29 ASN 29 62 62 ASN ASN A . n A 1 30 PRO 30 63 63 PRO PRO A . n A 1 31 LEU 31 64 64 LEU LEU A . n A 1 32 TYR 32 65 65 TYR TYR A . n A 1 33 PHE 33 66 66 PHE PHE A . n A 1 34 LEU 34 67 67 LEU LEU A . n A 1 35 ARG 35 68 68 ARG ARG A . n A 1 36 ASP 36 69 69 ASP ASP A . n A 1 37 GLY 37 70 70 GLY GLY A . n A 1 38 GLY 38 71 71 GLY GLY A . n A 1 39 ARG 39 72 72 ARG ARG A . n A 1 40 VAL 40 73 73 VAL VAL A . n A 1 41 ILE 41 74 74 ILE ILE A . n A 1 42 VAL 42 75 75 VAL VAL A . n A 1 43 ALA 43 76 76 ALA ALA A . n A 1 44 ALA 44 77 77 ALA ALA A . n A 1 45 SER 45 78 78 SER SER A . n A 1 46 LYS 46 79 79 LYS LYS A . n A 1 47 GLY 47 80 80 GLY GLY A . n A 1 48 GLY 48 81 81 GLY GLY A . n A 1 49 ALA 49 82 82 ALA ALA A . n A 1 50 GLU 50 83 83 GLU GLU A . n A 1 51 LYS 51 84 84 LYS LYS A . n A 1 52 ASN 52 85 85 ASN ASN A . n A 1 53 PRO 53 86 86 PRO PRO A . n A 1 54 MSE 54 87 87 MSE MSE A . n A 1 55 TRP 55 88 88 TRP TRP A . n A 1 56 TYR 56 89 89 TYR TYR A . n A 1 57 LEU 57 90 90 LEU LEU A . n A 1 58 ASN 58 91 91 ASN ASN A . n A 1 59 LEU 59 92 92 LEU LEU A . n A 1 60 LYS 60 93 93 LYS LYS A . n A 1 61 ALA 61 94 94 ALA ALA A . n A 1 62 ASN 62 95 95 ASN ASN A . n A 1 63 PRO 63 96 96 PRO PRO A . n A 1 64 LYS 64 97 97 LYS LYS A . n A 1 65 VAL 65 98 98 VAL VAL A . n A 1 66 GLN 66 99 99 GLN GLN A . n A 1 67 VAL 67 100 100 VAL VAL A . n A 1 68 GLN 68 101 101 GLN GLN A . n A 1 69 ILE 69 102 102 ILE ILE A . n A 1 70 LYS 70 103 103 LYS LYS A . n A 1 71 LYS 71 104 104 LYS LYS A . n A 1 72 GLU 72 105 105 GLU GLU A . n A 1 73 VAL 73 106 106 VAL VAL A . n A 1 74 LEU 74 107 107 LEU LEU A . n A 1 75 ASP 75 108 108 ASP ASP A . n A 1 76 LEU 76 109 109 LEU LEU A . n A 1 77 THR 77 110 110 THR THR A . n A 1 78 ALA 78 111 111 ALA ALA A . n A 1 79 ARG 79 112 112 ARG ARG A . n A 1 80 ASP 80 113 113 ASP ASP A . n A 1 81 ALA 81 114 114 ALA ALA A . n A 1 82 THR 82 115 115 THR THR A . n A 1 83 ASP 83 116 116 ASP ASP A . n A 1 84 GLU 84 117 117 GLU GLU A . n A 1 85 GLU 85 118 118 GLU GLU A . n A 1 86 ARG 86 119 119 ARG ARG A . n A 1 87 ALA 87 120 120 ALA ALA A . n A 1 88 GLU 88 121 121 GLU GLU A . n A 1 89 TYR 89 122 122 TYR TYR A . n A 1 90 TRP 90 123 123 TRP TRP A . n A 1 91 PRO 91 124 124 PRO PRO A . n A 1 92 GLN 92 125 125 GLN GLN A . n A 1 93 LEU 93 126 126 LEU LEU A . n A 1 94 VAL 94 127 127 VAL VAL A . n A 1 95 THR 95 128 128 THR THR A . n A 1 96 MSE 96 129 129 MSE MSE A . n A 1 97 TYR 97 130 130 TYR TYR A . n A 1 98 PRO 98 131 131 PRO PRO A . n A 1 99 SER 99 132 132 SER SER A . n A 1 100 TYR 100 133 133 TYR TYR A . n A 1 101 GLN 101 134 134 GLN GLN A . n A 1 102 ASP 102 135 135 ASP ASP A . n A 1 103 TYR 103 136 136 TYR TYR A . n A 1 104 GLN 104 137 137 GLN GLN A . n A 1 105 SER 105 138 138 SER SER A . n A 1 106 TRP 106 139 139 TRP TRP A . n A 1 107 THR 107 140 140 THR THR A . n A 1 108 ASP 108 141 141 ASP ASP A . n A 1 109 ARG 109 142 142 ARG ARG A . n A 1 110 THR 110 143 143 THR THR A . n A 1 111 ILE 111 144 144 ILE ILE A . n A 1 112 PRO 112 145 145 PRO PRO A . n A 1 113 ILE 113 146 146 ILE ILE A . n A 1 114 VAL 114 147 147 VAL VAL A . n A 1 115 VAL 115 148 148 VAL VAL A . n A 1 116 CYS 116 149 149 CYS CYS A . n A 1 117 GLU 117 150 150 GLU GLU A . n A 1 118 PRO 118 151 151 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 1 SO4 SO4 A . C 2 SO4 1 202 2 SO4 SO4 A . D 3 HOH 1 301 3 HOH HOH A . D 3 HOH 2 302 4 HOH HOH A . D 3 HOH 3 303 5 HOH HOH A . D 3 HOH 4 304 6 HOH HOH A . D 3 HOH 5 305 7 HOH HOH A . D 3 HOH 6 306 8 HOH HOH A . D 3 HOH 7 307 9 HOH HOH A . D 3 HOH 8 308 10 HOH HOH A . D 3 HOH 9 309 11 HOH HOH A . D 3 HOH 10 310 12 HOH HOH A . D 3 HOH 11 311 13 HOH HOH A . D 3 HOH 12 312 14 HOH HOH A . D 3 HOH 13 313 15 HOH HOH A . D 3 HOH 14 314 16 HOH HOH A . D 3 HOH 15 315 17 HOH HOH A . D 3 HOH 16 316 18 HOH HOH A . D 3 HOH 17 317 19 HOH HOH A . D 3 HOH 18 318 20 HOH HOH A . D 3 HOH 19 319 21 HOH HOH A . D 3 HOH 20 320 22 HOH HOH A . D 3 HOH 21 321 23 HOH HOH A . D 3 HOH 22 322 24 HOH HOH A . D 3 HOH 23 323 25 HOH HOH A . D 3 HOH 24 324 26 HOH HOH A . D 3 HOH 25 325 27 HOH HOH A . D 3 HOH 26 326 28 HOH HOH A . D 3 HOH 27 327 29 HOH HOH A . D 3 HOH 28 328 30 HOH HOH A . D 3 HOH 29 329 31 HOH HOH A . D 3 HOH 30 330 32 HOH HOH A . D 3 HOH 31 331 33 HOH HOH A . D 3 HOH 32 332 1 HOH HOH A . D 3 HOH 33 333 2 HOH HOH A . D 3 HOH 34 334 34 HOH HOH A . D 3 HOH 35 335 35 HOH HOH A . D 3 HOH 36 336 36 HOH HOH A . D 3 HOH 37 337 37 HOH HOH A . D 3 HOH 38 338 38 HOH HOH A . D 3 HOH 39 339 39 HOH HOH A . D 3 HOH 40 340 40 HOH HOH A . D 3 HOH 41 341 41 HOH HOH A . D 3 HOH 42 342 42 HOH HOH A . D 3 HOH 43 343 43 HOH HOH A . D 3 HOH 44 344 44 HOH HOH A . D 3 HOH 45 345 45 HOH HOH A . D 3 HOH 46 346 46 HOH HOH A . D 3 HOH 47 347 47 HOH HOH A . D 3 HOH 48 348 48 HOH HOH A . D 3 HOH 49 349 49 HOH HOH A . D 3 HOH 50 350 50 HOH HOH A . D 3 HOH 51 351 51 HOH HOH A . D 3 HOH 52 352 52 HOH HOH A . D 3 HOH 53 353 53 HOH HOH A . D 3 HOH 54 354 54 HOH HOH A . D 3 HOH 55 355 55 HOH HOH A . D 3 HOH 56 356 56 HOH HOH A . D 3 HOH 57 357 57 HOH HOH A . D 3 HOH 58 358 58 HOH HOH A . D 3 HOH 59 359 59 HOH HOH A . D 3 HOH 60 360 60 HOH HOH A . D 3 HOH 61 361 61 HOH HOH A . D 3 HOH 62 362 62 HOH HOH A . D 3 HOH 63 363 63 HOH HOH A . D 3 HOH 64 364 64 HOH HOH A . D 3 HOH 65 365 65 HOH HOH A . D 3 HOH 66 366 66 HOH HOH A . D 3 HOH 67 367 67 HOH HOH A . D 3 HOH 68 368 68 HOH HOH A . D 3 HOH 69 369 69 HOH HOH A . D 3 HOH 70 370 70 HOH HOH A . D 3 HOH 71 371 71 HOH HOH A . D 3 HOH 72 372 72 HOH HOH A . D 3 HOH 73 373 73 HOH HOH A . D 3 HOH 74 374 74 HOH HOH A . D 3 HOH 75 375 75 HOH HOH A . D 3 HOH 76 376 76 HOH HOH A . D 3 HOH 77 377 77 HOH HOH A . D 3 HOH 78 378 78 HOH HOH A . D 3 HOH 79 379 79 HOH HOH A . D 3 HOH 80 380 80 HOH HOH A . D 3 HOH 81 381 81 HOH HOH A . D 3 HOH 82 382 82 HOH HOH A . D 3 HOH 83 383 83 HOH HOH A . D 3 HOH 84 384 84 HOH HOH A . D 3 HOH 85 385 85 HOH HOH A . D 3 HOH 86 386 86 HOH HOH A . D 3 HOH 87 387 87 HOH HOH A . D 3 HOH 88 388 88 HOH HOH A . D 3 HOH 89 389 89 HOH HOH A . D 3 HOH 90 390 90 HOH HOH A . D 3 HOH 91 391 91 HOH HOH A . D 3 HOH 92 392 92 HOH HOH A . D 3 HOH 93 393 93 HOH HOH A . D 3 HOH 94 394 94 HOH HOH A . D 3 HOH 95 395 95 HOH HOH A . D 3 HOH 96 396 96 HOH HOH A . D 3 HOH 97 397 97 HOH HOH A . D 3 HOH 98 398 98 HOH HOH A . D 3 HOH 99 399 99 HOH HOH A . D 3 HOH 100 400 100 HOH HOH A . D 3 HOH 101 401 101 HOH HOH A . D 3 HOH 102 402 102 HOH HOH A . D 3 HOH 103 403 103 HOH HOH A . D 3 HOH 104 404 104 HOH HOH A . D 3 HOH 105 405 105 HOH HOH A . D 3 HOH 106 406 106 HOH HOH A . D 3 HOH 107 407 107 HOH HOH A . D 3 HOH 108 408 108 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 54 A MSE 87 ? MET SELENOMETHIONINE 2 A MSE 96 A MSE 129 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-18 2 'Structure model' 1 1 2012-03-21 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-13 5 'Structure model' 1 4 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 5 'Structure model' '_chem_comp_atom.atom_id' 8 5 'Structure model' '_chem_comp_bond.atom_id_2' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.750 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 16598 _diffrn_reflns.pdbx_Rmerge_I_obs 0.116 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.87 _diffrn_reflns.av_sigmaI_over_netI 12.36 _diffrn_reflns.pdbx_redundancy 4.90 _diffrn_reflns.pdbx_percent_possible_obs 90.50 _diffrn_reflns.number 82014 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.75 50.00 ? ? 0.040 ? 1.233 5.30 100.00 1 3.77 4.75 ? ? 0.052 ? 1.500 5.30 100.00 1 3.29 3.77 ? ? 0.085 ? 1.951 5.30 100.00 1 2.99 3.29 ? ? 0.097 ? 1.467 5.50 100.00 1 2.78 2.99 ? ? 0.113 ? 0.870 5.50 100.00 1 2.61 2.78 ? ? 0.135 ? 0.728 5.50 100.00 1 2.48 2.61 ? ? 0.154 ? 0.698 5.50 100.00 1 2.38 2.48 ? ? 0.190 ? 0.690 5.50 100.00 1 2.28 2.38 ? ? 0.242 ? 0.670 5.50 100.00 1 2.20 2.28 ? ? 0.256 ? 0.676 5.50 100.00 1 2.14 2.20 ? ? 0.300 ? 0.645 5.50 100.00 1 2.07 2.14 ? ? 0.340 ? 0.613 5.40 100.00 1 2.02 2.07 ? ? 0.404 ? 0.573 5.20 100.00 1 1.97 2.02 ? ? 0.468 ? 0.559 4.70 99.80 1 1.93 1.97 ? ? 0.506 ? 0.539 4.20 96.60 1 1.89 1.93 ? ? 0.541 ? 0.547 3.70 89.30 1 1.85 1.89 ? ? 0.593 ? 0.524 3.40 75.50 1 1.81 1.85 ? ? 0.849 ? 0.466 3.10 63.20 1 1.78 1.81 ? ? 0.826 ? 0.449 2.70 47.20 1 1.75 1.78 ? ? ? ? 0.479 2.10 37.20 # _pdbx_phasing_MR.entry_id 3R5P _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 46.660 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 48.090 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 48.090 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.5_2 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 BOS . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 103 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 55.53 _pdbx_validate_torsion.psi -119.79 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 34 ? A GLY 1 2 1 Y 1 A GLU 35 ? A GLU 2 3 1 Y 1 A GLY 36 ? A GLY 3 4 1 Y 1 A LEU 37 ? A LEU 4 5 1 Y 1 A GLY 38 ? A GLY 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 LEU N N N N 162 LEU CA C N S 163 LEU C C N N 164 LEU O O N N 165 LEU CB C N N 166 LEU CG C N N 167 LEU CD1 C N N 168 LEU CD2 C N N 169 LEU OXT O N N 170 LEU H H N N 171 LEU H2 H N N 172 LEU HA H N N 173 LEU HB2 H N N 174 LEU HB3 H N N 175 LEU HG H N N 176 LEU HD11 H N N 177 LEU HD12 H N N 178 LEU HD13 H N N 179 LEU HD21 H N N 180 LEU HD22 H N N 181 LEU HD23 H N N 182 LEU HXT H N N 183 LYS N N N N 184 LYS CA C N S 185 LYS C C N N 186 LYS O O N N 187 LYS CB C N N 188 LYS CG C N N 189 LYS CD C N N 190 LYS CE C N N 191 LYS NZ N N N 192 LYS OXT O N N 193 LYS H H N N 194 LYS H2 H N N 195 LYS HA H N N 196 LYS HB2 H N N 197 LYS HB3 H N N 198 LYS HG2 H N N 199 LYS HG3 H N N 200 LYS HD2 H N N 201 LYS HD3 H N N 202 LYS HE2 H N N 203 LYS HE3 H N N 204 LYS HZ1 H N N 205 LYS HZ2 H N N 206 LYS HZ3 H N N 207 LYS HXT H N N 208 MSE N N N N 209 MSE CA C N S 210 MSE C C N N 211 MSE O O N N 212 MSE OXT O N N 213 MSE CB C N N 214 MSE CG C N N 215 MSE SE SE N N 216 MSE CE C N N 217 MSE H H N N 218 MSE H2 H N N 219 MSE HA H N N 220 MSE HXT H N N 221 MSE HB2 H N N 222 MSE HB3 H N N 223 MSE HG2 H N N 224 MSE HG3 H N N 225 MSE HE1 H N N 226 MSE HE2 H N N 227 MSE HE3 H N N 228 PHE N N N N 229 PHE CA C N S 230 PHE C C N N 231 PHE O O N N 232 PHE CB C N N 233 PHE CG C Y N 234 PHE CD1 C Y N 235 PHE CD2 C Y N 236 PHE CE1 C Y N 237 PHE CE2 C Y N 238 PHE CZ C Y N 239 PHE OXT O N N 240 PHE H H N N 241 PHE H2 H N N 242 PHE HA H N N 243 PHE HB2 H N N 244 PHE HB3 H N N 245 PHE HD1 H N N 246 PHE HD2 H N N 247 PHE HE1 H N N 248 PHE HE2 H N N 249 PHE HZ H N N 250 PHE HXT H N N 251 PRO N N N N 252 PRO CA C N S 253 PRO C C N N 254 PRO O O N N 255 PRO CB C N N 256 PRO CG C N N 257 PRO CD C N N 258 PRO OXT O N N 259 PRO H H N N 260 PRO HA H N N 261 PRO HB2 H N N 262 PRO HB3 H N N 263 PRO HG2 H N N 264 PRO HG3 H N N 265 PRO HD2 H N N 266 PRO HD3 H N N 267 PRO HXT H N N 268 SER N N N N 269 SER CA C N S 270 SER C C N N 271 SER O O N N 272 SER CB C N N 273 SER OG O N N 274 SER OXT O N N 275 SER H H N N 276 SER H2 H N N 277 SER HA H N N 278 SER HB2 H N N 279 SER HB3 H N N 280 SER HG H N N 281 SER HXT H N N 282 SO4 S S N N 283 SO4 O1 O N N 284 SO4 O2 O N N 285 SO4 O3 O N N 286 SO4 O4 O N N 287 THR N N N N 288 THR CA C N S 289 THR C C N N 290 THR O O N N 291 THR CB C N R 292 THR OG1 O N N 293 THR CG2 C N N 294 THR OXT O N N 295 THR H H N N 296 THR H2 H N N 297 THR HA H N N 298 THR HB H N N 299 THR HG1 H N N 300 THR HG21 H N N 301 THR HG22 H N N 302 THR HG23 H N N 303 THR HXT H N N 304 TRP N N N N 305 TRP CA C N S 306 TRP C C N N 307 TRP O O N N 308 TRP CB C N N 309 TRP CG C Y N 310 TRP CD1 C Y N 311 TRP CD2 C Y N 312 TRP NE1 N Y N 313 TRP CE2 C Y N 314 TRP CE3 C Y N 315 TRP CZ2 C Y N 316 TRP CZ3 C Y N 317 TRP CH2 C Y N 318 TRP OXT O N N 319 TRP H H N N 320 TRP H2 H N N 321 TRP HA H N N 322 TRP HB2 H N N 323 TRP HB3 H N N 324 TRP HD1 H N N 325 TRP HE1 H N N 326 TRP HE3 H N N 327 TRP HZ2 H N N 328 TRP HZ3 H N N 329 TRP HH2 H N N 330 TRP HXT H N N 331 TYR N N N N 332 TYR CA C N S 333 TYR C C N N 334 TYR O O N N 335 TYR CB C N N 336 TYR CG C Y N 337 TYR CD1 C Y N 338 TYR CD2 C Y N 339 TYR CE1 C Y N 340 TYR CE2 C Y N 341 TYR CZ C Y N 342 TYR OH O N N 343 TYR OXT O N N 344 TYR H H N N 345 TYR H2 H N N 346 TYR HA H N N 347 TYR HB2 H N N 348 TYR HB3 H N N 349 TYR HD1 H N N 350 TYR HD2 H N N 351 TYR HE1 H N N 352 TYR HE2 H N N 353 TYR HH H N N 354 TYR HXT H N N 355 VAL N N N N 356 VAL CA C N S 357 VAL C C N N 358 VAL O O N N 359 VAL CB C N N 360 VAL CG1 C N N 361 VAL CG2 C N N 362 VAL OXT O N N 363 VAL H H N N 364 VAL H2 H N N 365 VAL HA H N N 366 VAL HB H N N 367 VAL HG11 H N N 368 VAL HG12 H N N 369 VAL HG13 H N N 370 VAL HG21 H N N 371 VAL HG22 H N N 372 VAL HG23 H N N 373 VAL HXT H N N 374 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 MSE N CA sing N N 197 MSE N H sing N N 198 MSE N H2 sing N N 199 MSE CA C sing N N 200 MSE CA CB sing N N 201 MSE CA HA sing N N 202 MSE C O doub N N 203 MSE C OXT sing N N 204 MSE OXT HXT sing N N 205 MSE CB CG sing N N 206 MSE CB HB2 sing N N 207 MSE CB HB3 sing N N 208 MSE CG SE sing N N 209 MSE CG HG2 sing N N 210 MSE CG HG3 sing N N 211 MSE SE CE sing N N 212 MSE CE HE1 sing N N 213 MSE CE HE2 sing N N 214 MSE CE HE3 sing N N 215 PHE N CA sing N N 216 PHE N H sing N N 217 PHE N H2 sing N N 218 PHE CA C sing N N 219 PHE CA CB sing N N 220 PHE CA HA sing N N 221 PHE C O doub N N 222 PHE C OXT sing N N 223 PHE CB CG sing N N 224 PHE CB HB2 sing N N 225 PHE CB HB3 sing N N 226 PHE CG CD1 doub Y N 227 PHE CG CD2 sing Y N 228 PHE CD1 CE1 sing Y N 229 PHE CD1 HD1 sing N N 230 PHE CD2 CE2 doub Y N 231 PHE CD2 HD2 sing N N 232 PHE CE1 CZ doub Y N 233 PHE CE1 HE1 sing N N 234 PHE CE2 CZ sing Y N 235 PHE CE2 HE2 sing N N 236 PHE CZ HZ sing N N 237 PHE OXT HXT sing N N 238 PRO N CA sing N N 239 PRO N CD sing N N 240 PRO N H sing N N 241 PRO CA C sing N N 242 PRO CA CB sing N N 243 PRO CA HA sing N N 244 PRO C O doub N N 245 PRO C OXT sing N N 246 PRO CB CG sing N N 247 PRO CB HB2 sing N N 248 PRO CB HB3 sing N N 249 PRO CG CD sing N N 250 PRO CG HG2 sing N N 251 PRO CG HG3 sing N N 252 PRO CD HD2 sing N N 253 PRO CD HD3 sing N N 254 PRO OXT HXT sing N N 255 SER N CA sing N N 256 SER N H sing N N 257 SER N H2 sing N N 258 SER CA C sing N N 259 SER CA CB sing N N 260 SER CA HA sing N N 261 SER C O doub N N 262 SER C OXT sing N N 263 SER CB OG sing N N 264 SER CB HB2 sing N N 265 SER CB HB3 sing N N 266 SER OG HG sing N N 267 SER OXT HXT sing N N 268 SO4 S O1 doub N N 269 SO4 S O2 doub N N 270 SO4 S O3 sing N N 271 SO4 S O4 sing N N 272 THR N CA sing N N 273 THR N H sing N N 274 THR N H2 sing N N 275 THR CA C sing N N 276 THR CA CB sing N N 277 THR CA HA sing N N 278 THR C O doub N N 279 THR C OXT sing N N 280 THR CB OG1 sing N N 281 THR CB CG2 sing N N 282 THR CB HB sing N N 283 THR OG1 HG1 sing N N 284 THR CG2 HG21 sing N N 285 THR CG2 HG22 sing N N 286 THR CG2 HG23 sing N N 287 THR OXT HXT sing N N 288 TRP N CA sing N N 289 TRP N H sing N N 290 TRP N H2 sing N N 291 TRP CA C sing N N 292 TRP CA CB sing N N 293 TRP CA HA sing N N 294 TRP C O doub N N 295 TRP C OXT sing N N 296 TRP CB CG sing N N 297 TRP CB HB2 sing N N 298 TRP CB HB3 sing N N 299 TRP CG CD1 doub Y N 300 TRP CG CD2 sing Y N 301 TRP CD1 NE1 sing Y N 302 TRP CD1 HD1 sing N N 303 TRP CD2 CE2 doub Y N 304 TRP CD2 CE3 sing Y N 305 TRP NE1 CE2 sing Y N 306 TRP NE1 HE1 sing N N 307 TRP CE2 CZ2 sing Y N 308 TRP CE3 CZ3 doub Y N 309 TRP CE3 HE3 sing N N 310 TRP CZ2 CH2 doub Y N 311 TRP CZ2 HZ2 sing N N 312 TRP CZ3 CH2 sing Y N 313 TRP CZ3 HZ3 sing N N 314 TRP CH2 HH2 sing N N 315 TRP OXT HXT sing N N 316 TYR N CA sing N N 317 TYR N H sing N N 318 TYR N H2 sing N N 319 TYR CA C sing N N 320 TYR CA CB sing N N 321 TYR CA HA sing N N 322 TYR C O doub N N 323 TYR C OXT sing N N 324 TYR CB CG sing N N 325 TYR CB HB2 sing N N 326 TYR CB HB3 sing N N 327 TYR CG CD1 doub Y N 328 TYR CG CD2 sing Y N 329 TYR CD1 CE1 sing Y N 330 TYR CD1 HD1 sing N N 331 TYR CD2 CE2 doub Y N 332 TYR CD2 HD2 sing N N 333 TYR CE1 CZ doub Y N 334 TYR CE1 HE1 sing N N 335 TYR CE2 CZ sing Y N 336 TYR CE2 HE2 sing N N 337 TYR CZ OH sing N N 338 TYR OH HH sing N N 339 TYR OXT HXT sing N N 340 VAL N CA sing N N 341 VAL N H sing N N 342 VAL N H2 sing N N 343 VAL CA C sing N N 344 VAL CA CB sing N N 345 VAL CA HA sing N N 346 VAL C O doub N N 347 VAL C OXT sing N N 348 VAL CB CG1 sing N N 349 VAL CB CG2 sing N N 350 VAL CB HB sing N N 351 VAL CG1 HG11 sing N N 352 VAL CG1 HG12 sing N N 353 VAL CG1 HG13 sing N N 354 VAL CG2 HG21 sing N N 355 VAL CG2 HG22 sing N N 356 VAL CG2 HG23 sing N N 357 VAL OXT HXT sing N N 358 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3R5L _pdbx_initial_refinement_model.details 'PDB entry 3R5L (preliminary model used for MR)' #