HEADER METAL TRANSPORT 19-MAR-11 3R5T
TITLE CRYSTAL STRUCTURE OF HOLO-VIUP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FERRIC VIBRIOBACTIN ABC TRANSPORTER, PERIPLASMIC FERRIC
COMPND 3 VIBRIOBACTIN-BINDING PROTEIN;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: UNP RESIDUES 29-325;
COMPND 6 SYNONYM: PERIPLASMIC BINDING PROTEIN;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE;
SOURCE 3 ORGANISM_TAXID: 666;
SOURCE 4 STRAIN: N16961;
SOURCE 5 GENE: VIUP, VC_0776;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B
KEYWDS IRON-VIBRIOBACTIN TRANSPORT PROTEIN, PERIPLASMIC TRANSPORT PROTEIN,
KEYWDS 2 IRON-SIDEROPHORE BINDING, METAL TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR N.LI,C.ZHANG,B.LI,X.LIU,Y.HUANG,S.XU,L.GU
REVDAT 3 20-MAR-24 3R5T 1 COMPND REMARK SEQADV HETNAM
REVDAT 2 30-MAY-12 3R5T 1 JRNL
REVDAT 1 08-FEB-12 3R5T 0
JRNL AUTH N.LI,C.ZHANG,B.LI,X.LIU,Y.HUANG,S.XU,L.GU
JRNL TITL UNIQUE IRON COORDINATION IN IRON-CHELATING MOLECULE
JRNL TITL 2 VIBRIOBACTIN HELPS VIBRIO CHOLERAE EVADE MAMMALIAN
JRNL TITL 3 SIDEROCALIN-MEDIATED IMMUNE RESPONSE.
JRNL REF J.BIOL.CHEM. V. 287 8912 2012
JRNL REFN ISSN 0021-9258
JRNL PMID 22291019
JRNL DOI 10.1074/JBC.M111.316034
REMARK 2
REMARK 2 RESOLUTION. 1.45 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.60
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6
REMARK 3 NUMBER OF REFLECTIONS : 46569
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.183
REMARK 3 R VALUE (WORKING SET) : 0.182
REMARK 3 FREE R VALUE : 0.209
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.140
REMARK 3 FREE R VALUE TEST SET COUNT : 1927
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.6044 - 3.4911 0.94 3274 142 0.1681 0.1933
REMARK 3 2 3.4911 - 2.7722 0.95 3250 140 0.1791 0.2218
REMARK 3 3 2.7722 - 2.4221 0.98 3355 143 0.1802 0.2213
REMARK 3 4 2.4221 - 2.2008 0.98 3359 147 0.1807 0.2038
REMARK 3 5 2.2008 - 2.0432 0.98 3335 144 0.1771 0.2046
REMARK 3 6 2.0432 - 1.9228 0.98 3354 147 0.1858 0.1838
REMARK 3 7 1.9228 - 1.8265 0.97 3310 141 0.1821 0.2017
REMARK 3 8 1.8265 - 1.7470 0.96 3274 139 0.1809 0.2124
REMARK 3 9 1.7470 - 1.6798 0.97 3269 144 0.1866 0.2027
REMARK 3 10 1.6798 - 1.6218 0.95 3252 142 0.1846 0.2183
REMARK 3 11 1.6218 - 1.5711 0.95 3198 140 0.1861 0.1971
REMARK 3 12 1.5711 - 1.5262 0.92 3100 132 0.2083 0.2326
REMARK 3 13 1.5262 - 1.4860 0.86 2900 123 0.2349 0.2504
REMARK 3 14 1.4860 - 1.4498 0.71 2412 103 0.2414 0.2354
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : 0.33
REMARK 3 B_SOL : 41.01
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 25.96
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.27020
REMARK 3 B22 (A**2) : -0.96260
REMARK 3 B33 (A**2) : -4.17660
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -1.80480
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 2529
REMARK 3 ANGLE : 1.181 3478
REMARK 3 CHIRALITY : 0.073 398
REMARK 3 PLANARITY : 0.008 448
REMARK 3 DIHEDRAL : 16.865 971
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3R5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-11.
REMARK 100 THE DEPOSITION ID IS D_1000064525.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 20-JUN-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL17U
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792
REMARK 200 MONOCHROMATOR : SAGITTALLY FOCUSED SI 111
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48330
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6
REMARK 200 DATA REDUNDANCY : 3.500
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : 0.06000
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9900
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50
REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0
REMARK 200 DATA REDUNDANCY IN SHELL : 2.50
REMARK 200 R MERGE FOR SHELL (I) : 0.28300
REMARK 200 R SYM FOR SHELL (I) : 0.28300
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.160
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 40.88
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM
REMARK 280 ACETATE PH 4.6, 30% W/V POLYETHYLENE GLYCOL 4000, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.24800
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.77250
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.24800
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.77250
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 548 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLN A 29
REMARK 465 GLN A 30
REMARK 465 GLU A 327
REMARK 465 HIS A 328
REMARK 465 HIS A 329
REMARK 465 HIS A 330
REMARK 465 HIS A 331
REMARK 465 HIS A 332
REMARK 465 HIS A 333
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 99 -142.62 -96.59
REMARK 500 ALA A 102 132.54 -37.05
REMARK 500 GLU A 317 24.62 -73.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 FE A 2 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 VBN A 1 OAJ
REMARK 620 2 VBN A 1 OAI 108.2
REMARK 620 3 VBN A 1 OAF 93.9 78.0
REMARK 620 4 VBN A 1 N 80.4 91.8 166.2
REMARK 620 5 VBN A 1 OAH 85.8 162.4 90.8 101.2
REMARK 620 6 VBN A 1 OAK 154.9 92.7 104.3 85.2 76.8
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VBN A 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 2
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 5
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3R5S RELATED DB: PDB
DBREF 3R5T A 29 325 UNP Q9RCF6 Q9RCF6_VIBCH 29 325
SEQADV 3R5T LEU A 326 UNP Q9RCF6 EXPRESSION TAG
SEQADV 3R5T GLU A 327 UNP Q9RCF6 EXPRESSION TAG
SEQADV 3R5T HIS A 328 UNP Q9RCF6 EXPRESSION TAG
SEQADV 3R5T HIS A 329 UNP Q9RCF6 EXPRESSION TAG
SEQADV 3R5T HIS A 330 UNP Q9RCF6 EXPRESSION TAG
SEQADV 3R5T HIS A 331 UNP Q9RCF6 EXPRESSION TAG
SEQADV 3R5T HIS A 332 UNP Q9RCF6 EXPRESSION TAG
SEQADV 3R5T HIS A 333 UNP Q9RCF6 EXPRESSION TAG
SEQRES 1 A 305 GLN GLN ASN VAL TRP PRO ARG THR PHE GLN ASN ALA ASP
SEQRES 2 A 305 GLY SER ILE THR THR ILE PRO SER GLN PRO LYS ARG ILE
SEQRES 3 A 305 LEU SER THR ALA VAL THR VAL THR GLY THR LEU LEU ALA
SEQRES 4 A 305 ILE ASP ALA PRO VAL ILE ALA SER ALA ALA THR THR GLN
SEQRES 5 A 305 SER THR PHE PHE GLU GLN TRP ARG LYS LEU ALA GLU LEU
SEQRES 6 A 305 ARG GLN VAL LYS LYS LEU TRP PRO ALA GLY SER VAL ASP
SEQRES 7 A 305 LEU GLU SER VAL TYR VAL GLU GLN PRO ASP LEU ILE VAL
SEQRES 8 A 305 VAL SER MET ILE GLY ALA ASP SER ALA ARG ASP GLN ILE
SEQRES 9 A 305 PRO LEU LEU GLN ALA ILE ALA PRO THR ILE LEU VAL ASP
SEQRES 10 A 305 TYR SER ASP GLN THR TRP GLN SER LEU ALA GLN GLN LEU
SEQRES 11 A 305 GLY LEU ALA THR GLY LEU GLU GLU GLN ALA GLU ARG THR
SEQRES 12 A 305 ILE HIS ASN PHE GLU GLN TRP THR LYS GLN VAL ARG ASP
SEQRES 13 A 305 VAL LEU ASP LEU PRO LYS GLY ARG ALA ASN ILE VAL SER
SEQRES 14 A 305 TYR HIS GLY PRO GLY VAL VAL ASN ALA VAL ALA LYS ALA
SEQRES 15 A 305 GLN SER ALA HIS ALA GLN LEU LEU GLN SER VAL GLY VAL
SEQRES 16 A 305 VAL LEU GLU GLU PRO ASP PRO ALA TRP GLN ALA GLY SER
SEQRES 17 A 305 ILE VAL HIS ARG ASP PHE LEU ARG ILE HIS TYR GLU HIS
SEQRES 18 A 305 LEU THR GLN LEU GLN ALA GLU THR THR PHE LEU ILE THR
SEQRES 19 A 305 MET THR ASP GLN GLN ALA GLN ALA PHE LEU HIS ASP PRO
SEQRES 20 A 305 ILE LEU LYS ASN LEU PRO SER ILE GLN ARG LYS GLN VAL
SEQRES 21 A 305 TYR GLY LEU GLY GLU ASN SER PHE ARG ILE ASP LEU PHE
SEQRES 22 A 305 SER ALA ARG GLU ILE ILE ASN SER LEU LEU ARG ARG PHE
SEQRES 23 A 305 ALA GLY GLU GLN ALA GLN SER LEU VAL MET PRO LEU GLU
SEQRES 24 A 305 HIS HIS HIS HIS HIS HIS
HET VBN A 1 51
HET FE A 2 1
HET MOH A 3 2
HET EDO A 4 4
HET ACY A 5 4
HETNAM VBN (4S,5R)-N-{3-[(2,3-DIHYDROXYBENZOYL)AMINO]PROPYL}-2-(2,
HETNAM 2 VBN 3-DIHYDROXYPHENYL)-N-[3-({[(4S,5R)-2-(2,3-
HETNAM 3 VBN DIHYDROXYPHENYL)-5-MET HYL-4,5-DIHYDRO-1,3-OXAZOL-4-
HETNAM 4 VBN YL]CARBONYL}AMINO)PROPYL]-5-METHYL-4,5-DIHYDRO-1,3-
HETNAM 5 VBN OXAZOLE-4-CARBOXAMIDE
HETNAM FE FE (III) ION
HETNAM MOH METHANOL
HETNAM EDO 1,2-ETHANEDIOL
HETNAM ACY ACETIC ACID
HETSYN VBN VIBRIOBACTIN
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 VBN C35 H39 N5 O11
FORMUL 3 FE FE 3+
FORMUL 4 MOH C H4 O
FORMUL 5 EDO C2 H6 O2
FORMUL 6 ACY C2 H4 O2
FORMUL 7 HOH *377(H2 O)
HELIX 1 1 ALA A 58 ILE A 68 1 11
HELIX 2 2 TRP A 87 ARG A 94 1 8
HELIX 3 3 ASP A 106 GLN A 114 1 9
HELIX 4 4 ALA A 128 ASP A 130 5 3
HELIX 5 5 GLN A 131 ALA A 137 1 7
HELIX 6 6 THR A 150 GLY A 163 1 14
HELIX 7 7 LEU A 164 ASP A 184 1 21
HELIX 8 8 SER A 212 VAL A 221 1 10
HELIX 9 9 ASP A 229 GLN A 233 5 5
HELIX 10 10 HIS A 246 LEU A 253 5 8
HELIX 11 11 THR A 264 HIS A 273 1 10
HELIX 12 12 ASP A 274 LYS A 278 5 5
HELIX 13 13 LEU A 280 ARG A 285 1 6
HELIX 14 14 ASP A 299 ALA A 315 1 17
SHEET 1 A 2 ARG A 35 GLN A 38 0
SHEET 2 A 2 ILE A 44 ILE A 47 -1 O ILE A 47 N ARG A 35
SHEET 1 B 5 LYS A 97 PRO A 101 0
SHEET 2 B 5 VAL A 72 ALA A 77 1 N SER A 75 O LEU A 99
SHEET 3 B 5 ILE A 54 SER A 56 1 N ILE A 54 O ILE A 73
SHEET 4 B 5 LEU A 117 SER A 121 1 O LEU A 117 N LEU A 55
SHEET 5 B 5 THR A 141 VAL A 144 1 O ILE A 142 N ILE A 118
SHEET 1 C 5 PHE A 242 ILE A 245 0
SHEET 2 C 5 ASN A 205 ALA A 208 -1 N ASN A 205 O ILE A 245
SHEET 3 C 5 ALA A 193 SER A 197 -1 N ILE A 195 O ALA A 208
SHEET 4 C 5 THR A 257 LEU A 260 1 O PHE A 259 N VAL A 196
SHEET 5 C 5 VAL A 288 GLY A 290 1 O TYR A 289 N THR A 258
LINK OAJ VBN A 1 FE FE A 2 1555 1555 2.01
LINK OAI VBN A 1 FE FE A 2 1555 1555 2.11
LINK OAF VBN A 1 FE FE A 2 1555 1555 2.12
LINK N VBN A 1 FE FE A 2 1555 1555 2.14
LINK OAH VBN A 1 FE FE A 2 1555 1555 2.16
LINK OAK VBN A 1 FE FE A 2 1555 1555 2.21
CISPEP 1 TRP A 33 PRO A 34 0 -2.28
SITE 1 AC1 22 FE A 2 HOH A 6 HOH A 19 THR A 78
SITE 2 AC1 22 GLN A 80 LEU A 107 GLU A 108 TYR A 111
SITE 3 AC1 22 GLY A 124 ALA A 125 ASP A 126 SER A 197
SITE 4 AC1 22 HIS A 199 HIS A 239 PHE A 242 ARG A 244
SITE 5 AC1 22 PHE A 296 ARG A 297 HOH A 380 HOH A 424
SITE 6 AC1 22 HOH A 432 HOH A 444
SITE 1 AC2 1 VBN A 1
SITE 1 AC3 8 THR A 36 PHE A 37 GLN A 38 LEU A 160
SITE 2 AC3 8 ARG A 170 HOH A 550 HOH A 594 HOH A 647
SITE 1 AC4 5 TRP A 100 PRO A 101 HIS A 246 HOH A 334
SITE 2 AC4 5 HOH A 471
CRYST1 82.496 55.545 69.542 90.00 117.02 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012122 0.000000 0.006182 0.00000
SCALE2 0.000000 0.018003 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016142 0.00000