HEADER TRANSFERASE 22-MAR-11 3R7F TITLE CRYSTAL STRUCTURE OF CP-BOUND ASPARTATE TRANSCARBAMOYLASE FROM TITLE 2 BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ASPARTATE TRANSCARBAMYLASE, ATCASE; COMPND 5 EC: 2.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: PYRB, BSU15490; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTATE TRANSCARBAMOYLASE, CARBAMOYL PHOSPHATE, TRANSFERASE, KEYWDS 2 CATALYTIC CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR G.M.COCKRELL,K.M.HARRIS,D.E.PULEO,E.R.KANTROWITZ REVDAT 5 21-FEB-24 3R7F 1 REMARK REVDAT 4 08-NOV-17 3R7F 1 REMARK REVDAT 3 10-AUG-11 3R7F 1 JRNL VERSN REVDAT 2 29-JUN-11 3R7F 1 JRNL REVDAT 1 08-JUN-11 3R7F 0 JRNL AUTH K.M.HARRIS,G.M.COCKRELL,D.E.PULEO,E.R.KANTROWITZ JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF THE COMPLETE CATALYTIC CYCLE JRNL TITL 2 OF THE UNREGULATED ASPARTATE TRANSCARBAMOYLASE FROM BACILLUS JRNL TITL 3 SUBTILIS. JRNL REF J.MOL.BIOL. V. 411 190 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21663747 JRNL DOI 10.1016/J.JMB.2011.05.036 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 111416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1216 - 4.5231 1.00 11120 203 0.1679 0.1733 REMARK 3 2 4.5231 - 3.5914 1.00 11031 202 0.1467 0.1604 REMARK 3 3 3.5914 - 3.1378 1.00 10993 201 0.1716 0.2273 REMARK 3 4 3.1378 - 2.8511 1.00 10964 200 0.1759 0.1975 REMARK 3 5 2.8511 - 2.6468 1.00 11011 201 0.1756 0.2243 REMARK 3 6 2.6468 - 2.4908 1.00 10973 201 0.1732 0.1895 REMARK 3 7 2.4908 - 2.3661 1.00 10948 201 0.1745 0.2094 REMARK 3 8 2.3661 - 2.2631 1.00 10986 200 0.1858 0.1919 REMARK 3 9 2.2631 - 2.1760 1.00 10964 200 0.2167 0.2649 REMARK 3 10 2.1760 - 2.1010 0.95 10427 190 0.2186 0.2616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 43.49 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.97540 REMARK 3 B22 (A**2) : -13.50940 REMARK 3 B33 (A**2) : 2.89480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.26650 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7107 REMARK 3 ANGLE : 1.094 9600 REMARK 3 CHIRALITY : 0.076 1088 REMARK 3 PLANARITY : 0.004 1239 REMARK 3 DIHEDRAL : 14.900 2667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 125.95800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 125.95800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 76.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 570 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 292 REMARK 465 VAL A 293 REMARK 465 LYS A 294 REMARK 465 ARG A 295 REMARK 465 GLY A 296 REMARK 465 GLU A 297 REMARK 465 ALA A 298 REMARK 465 ALA A 299 REMARK 465 TYR A 300 REMARK 465 VAL A 301 REMARK 465 ILE A 302 REMARK 465 SER A 303 REMARK 465 HIS A 304 REMARK 465 ASN B 292 REMARK 465 VAL B 293 REMARK 465 LYS B 294 REMARK 465 ARG B 295 REMARK 465 GLY B 296 REMARK 465 GLU B 297 REMARK 465 ALA B 298 REMARK 465 ALA B 299 REMARK 465 TYR B 300 REMARK 465 VAL B 301 REMARK 465 ILE B 302 REMARK 465 SER B 303 REMARK 465 HIS B 304 REMARK 465 ASN C 292 REMARK 465 VAL C 293 REMARK 465 LYS C 294 REMARK 465 ARG C 295 REMARK 465 GLY C 296 REMARK 465 GLU C 297 REMARK 465 ALA C 298 REMARK 465 ALA C 299 REMARK 465 TYR C 300 REMARK 465 VAL C 301 REMARK 465 ILE C 302 REMARK 465 SER C 303 REMARK 465 HIS C 304 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 183 CD OE2 REMARK 480 GLU A 187 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 79 O HOH A 525 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 -164.71 -103.14 REMARK 500 SER A 74 1.85 -63.35 REMARK 500 GLU A 107 -70.15 -38.63 REMARK 500 CYS A 124 32.92 -85.14 REMARK 500 GLU A 187 36.40 -71.15 REMARK 500 ALA A 250 161.49 67.90 REMARK 500 VAL A 256 -79.40 -109.45 REMARK 500 SER B 47 130.80 -171.36 REMARK 500 THR B 48 -74.61 -69.37 REMARK 500 ASP B 69 20.36 -148.82 REMARK 500 SER B 74 7.57 -63.30 REMARK 500 LYS B 77 -162.05 -70.60 REMARK 500 PHE B 191 41.53 -109.77 REMARK 500 GLU B 215 -170.77 -53.76 REMARK 500 ARG B 216 -109.08 46.65 REMARK 500 GLN B 218 -72.82 -47.06 REMARK 500 ALA B 250 156.08 68.87 REMARK 500 VAL B 256 -78.85 -113.68 REMARK 500 THR C 71 23.93 -79.25 REMARK 500 THR C 73 42.40 -66.62 REMARK 500 HIS C 127 73.09 -150.97 REMARK 500 ARG C 216 -107.17 75.26 REMARK 500 ALA C 250 161.01 70.01 REMARK 500 VAL C 256 -77.18 -113.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP C 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R7D RELATED DB: PDB REMARK 900 RELATED ID: 3R7L RELATED DB: PDB DBREF 3R7F A 1 304 UNP P05654 PYRB_BACSU 1 304 DBREF 3R7F B 1 304 UNP P05654 PYRB_BACSU 1 304 DBREF 3R7F C 1 304 UNP P05654 PYRB_BACSU 1 304 SEQRES 1 A 304 MET LYS HIS LEU THR THR MET SER GLU LEU SER THR GLU SEQRES 2 A 304 GLU ILE LYS ASP LEU LEU GLN THR ALA GLN GLU LEU LYS SEQRES 3 A 304 SER GLY LYS THR ASP ASN GLN LEU THR GLY LYS PHE ALA SEQRES 4 A 304 ALA ASN LEU PHE PHE GLU PRO SER THR ARG THR ARG PHE SEQRES 5 A 304 SER PHE GLU VAL ALA GLU LYS LYS LEU GLY MET ASN VAL SEQRES 6 A 304 LEU ASN LEU ASP GLY THR SER THR SER VAL GLN LYS GLY SEQRES 7 A 304 GLU THR LEU TYR ASP THR ILE ARG THR LEU GLU SER ILE SEQRES 8 A 304 GLY VAL ASP VAL CYS VAL ILE ARG HIS SER GLU ASP GLU SEQRES 9 A 304 TYR TYR GLU GLU LEU VAL SER GLN VAL ASN ILE PRO ILE SEQRES 10 A 304 LEU ASN ALA GLY ASP GLY CYS GLY GLN HIS PRO THR GLN SEQRES 11 A 304 SER LEU LEU ASP LEU MET THR ILE TYR GLU GLU PHE ASN SEQRES 12 A 304 THR PHE LYS GLY LEU THR VAL SER ILE HIS GLY ASP ILE SEQRES 13 A 304 LYS HIS SER ARG VAL ALA ARG SER ASN ALA GLU VAL LEU SEQRES 14 A 304 THR ARG LEU GLY ALA ARG VAL LEU PHE SER GLY PRO SER SEQRES 15 A 304 GLU TRP GLN ASP GLU GLU ASN THR PHE GLY THR TYR VAL SEQRES 16 A 304 SER MET ASP GLU ALA VAL GLU SER SER ASP VAL VAL MET SEQRES 17 A 304 LEU LEU ARG ILE GLN ASN GLU ARG HIS GLN SER ALA VAL SEQRES 18 A 304 SER GLN GLU GLY TYR LEU ASN LYS TYR GLY LEU THR VAL SEQRES 19 A 304 GLU ARG ALA GLU ARG MET LYS ARG HIS ALA ILE ILE MET SEQRES 20 A 304 HIS PRO ALA PRO VAL ASN ARG GLY VAL GLU ILE ASP ASP SEQRES 21 A 304 SER LEU VAL GLU SER GLU LYS SER ARG ILE PHE LYS GLN SEQRES 22 A 304 MET LYS ASN GLY VAL PHE ILE ARG MET ALA VAL ILE GLN SEQRES 23 A 304 ARG ALA LEU GLN THR ASN VAL LYS ARG GLY GLU ALA ALA SEQRES 24 A 304 TYR VAL ILE SER HIS SEQRES 1 B 304 MET LYS HIS LEU THR THR MET SER GLU LEU SER THR GLU SEQRES 2 B 304 GLU ILE LYS ASP LEU LEU GLN THR ALA GLN GLU LEU LYS SEQRES 3 B 304 SER GLY LYS THR ASP ASN GLN LEU THR GLY LYS PHE ALA SEQRES 4 B 304 ALA ASN LEU PHE PHE GLU PRO SER THR ARG THR ARG PHE SEQRES 5 B 304 SER PHE GLU VAL ALA GLU LYS LYS LEU GLY MET ASN VAL SEQRES 6 B 304 LEU ASN LEU ASP GLY THR SER THR SER VAL GLN LYS GLY SEQRES 7 B 304 GLU THR LEU TYR ASP THR ILE ARG THR LEU GLU SER ILE SEQRES 8 B 304 GLY VAL ASP VAL CYS VAL ILE ARG HIS SER GLU ASP GLU SEQRES 9 B 304 TYR TYR GLU GLU LEU VAL SER GLN VAL ASN ILE PRO ILE SEQRES 10 B 304 LEU ASN ALA GLY ASP GLY CYS GLY GLN HIS PRO THR GLN SEQRES 11 B 304 SER LEU LEU ASP LEU MET THR ILE TYR GLU GLU PHE ASN SEQRES 12 B 304 THR PHE LYS GLY LEU THR VAL SER ILE HIS GLY ASP ILE SEQRES 13 B 304 LYS HIS SER ARG VAL ALA ARG SER ASN ALA GLU VAL LEU SEQRES 14 B 304 THR ARG LEU GLY ALA ARG VAL LEU PHE SER GLY PRO SER SEQRES 15 B 304 GLU TRP GLN ASP GLU GLU ASN THR PHE GLY THR TYR VAL SEQRES 16 B 304 SER MET ASP GLU ALA VAL GLU SER SER ASP VAL VAL MET SEQRES 17 B 304 LEU LEU ARG ILE GLN ASN GLU ARG HIS GLN SER ALA VAL SEQRES 18 B 304 SER GLN GLU GLY TYR LEU ASN LYS TYR GLY LEU THR VAL SEQRES 19 B 304 GLU ARG ALA GLU ARG MET LYS ARG HIS ALA ILE ILE MET SEQRES 20 B 304 HIS PRO ALA PRO VAL ASN ARG GLY VAL GLU ILE ASP ASP SEQRES 21 B 304 SER LEU VAL GLU SER GLU LYS SER ARG ILE PHE LYS GLN SEQRES 22 B 304 MET LYS ASN GLY VAL PHE ILE ARG MET ALA VAL ILE GLN SEQRES 23 B 304 ARG ALA LEU GLN THR ASN VAL LYS ARG GLY GLU ALA ALA SEQRES 24 B 304 TYR VAL ILE SER HIS SEQRES 1 C 304 MET LYS HIS LEU THR THR MET SER GLU LEU SER THR GLU SEQRES 2 C 304 GLU ILE LYS ASP LEU LEU GLN THR ALA GLN GLU LEU LYS SEQRES 3 C 304 SER GLY LYS THR ASP ASN GLN LEU THR GLY LYS PHE ALA SEQRES 4 C 304 ALA ASN LEU PHE PHE GLU PRO SER THR ARG THR ARG PHE SEQRES 5 C 304 SER PHE GLU VAL ALA GLU LYS LYS LEU GLY MET ASN VAL SEQRES 6 C 304 LEU ASN LEU ASP GLY THR SER THR SER VAL GLN LYS GLY SEQRES 7 C 304 GLU THR LEU TYR ASP THR ILE ARG THR LEU GLU SER ILE SEQRES 8 C 304 GLY VAL ASP VAL CYS VAL ILE ARG HIS SER GLU ASP GLU SEQRES 9 C 304 TYR TYR GLU GLU LEU VAL SER GLN VAL ASN ILE PRO ILE SEQRES 10 C 304 LEU ASN ALA GLY ASP GLY CYS GLY GLN HIS PRO THR GLN SEQRES 11 C 304 SER LEU LEU ASP LEU MET THR ILE TYR GLU GLU PHE ASN SEQRES 12 C 304 THR PHE LYS GLY LEU THR VAL SER ILE HIS GLY ASP ILE SEQRES 13 C 304 LYS HIS SER ARG VAL ALA ARG SER ASN ALA GLU VAL LEU SEQRES 14 C 304 THR ARG LEU GLY ALA ARG VAL LEU PHE SER GLY PRO SER SEQRES 15 C 304 GLU TRP GLN ASP GLU GLU ASN THR PHE GLY THR TYR VAL SEQRES 16 C 304 SER MET ASP GLU ALA VAL GLU SER SER ASP VAL VAL MET SEQRES 17 C 304 LEU LEU ARG ILE GLN ASN GLU ARG HIS GLN SER ALA VAL SEQRES 18 C 304 SER GLN GLU GLY TYR LEU ASN LYS TYR GLY LEU THR VAL SEQRES 19 C 304 GLU ARG ALA GLU ARG MET LYS ARG HIS ALA ILE ILE MET SEQRES 20 C 304 HIS PRO ALA PRO VAL ASN ARG GLY VAL GLU ILE ASP ASP SEQRES 21 C 304 SER LEU VAL GLU SER GLU LYS SER ARG ILE PHE LYS GLN SEQRES 22 C 304 MET LYS ASN GLY VAL PHE ILE ARG MET ALA VAL ILE GLN SEQRES 23 C 304 ARG ALA LEU GLN THR ASN VAL LYS ARG GLY GLU ALA ALA SEQRES 24 C 304 TYR VAL ILE SER HIS HET CP A 802 8 HET PO4 A 305 5 HET PO4 A 306 5 HET PO4 A 307 5 HET PO4 A 308 5 HET PO4 A 309 5 HET PO4 A 310 5 HET CP B 802 8 HET PO4 B 305 5 HET PO4 B 306 5 HET PO4 B 307 5 HET CP B 308 8 HET CP C 802 8 HET PO4 C 305 5 HET PO4 C 306 5 HET PO4 C 307 5 HET PO4 C 308 5 HETNAM CP PHOSPHORIC ACID MONO(FORMAMIDE)ESTER HETNAM PO4 PHOSPHATE ION FORMUL 4 CP 4(C H4 N O5 P) FORMUL 5 PO4 13(O4 P 3-) FORMUL 21 HOH *624(H2 O) HELIX 1 1 THR A 6 LEU A 10 5 5 HELIX 2 2 SER A 11 SER A 27 1 17 HELIX 3 3 THR A 48 LEU A 61 1 14 HELIX 4 4 THR A 80 GLY A 92 1 13 HELIX 5 5 TYR A 105 VAL A 113 1 9 HELIX 6 6 HIS A 127 ASN A 143 1 17 HELIX 7 7 SER A 159 LEU A 172 1 14 HELIX 8 8 PRO A 181 GLN A 185 5 5 HELIX 9 9 SER A 196 SER A 204 1 9 HELIX 10 10 GLY A 225 GLY A 231 1 7 HELIX 11 11 THR A 233 GLU A 238 1 6 HELIX 12 12 ASP A 259 VAL A 263 5 5 HELIX 13 13 ARG A 269 GLN A 290 1 22 HELIX 14 14 THR B 6 LEU B 10 5 5 HELIX 15 15 SER B 11 SER B 27 1 17 HELIX 16 16 THR B 48 LEU B 61 1 14 HELIX 17 17 THR B 80 GLY B 92 1 13 HELIX 18 18 GLU B 104 VAL B 113 1 10 HELIX 19 19 HIS B 127 ASN B 143 1 17 HELIX 20 20 SER B 159 LEU B 172 1 14 HELIX 21 21 PRO B 181 GLN B 185 5 5 HELIX 22 22 SER B 196 SER B 204 1 9 HELIX 23 23 GLY B 225 GLY B 231 1 7 HELIX 24 24 THR B 233 GLU B 238 1 6 HELIX 25 25 ASP B 259 VAL B 263 5 5 HELIX 26 26 ARG B 269 GLN B 290 1 22 HELIX 27 27 THR C 6 LEU C 10 5 5 HELIX 28 28 SER C 11 SER C 27 1 17 HELIX 29 29 THR C 48 LEU C 61 1 14 HELIX 30 30 THR C 80 GLY C 92 1 13 HELIX 31 31 TYR C 105 VAL C 113 1 9 HELIX 32 32 HIS C 127 ASN C 143 1 17 HELIX 33 33 ASP C 155 HIS C 158 5 4 HELIX 34 34 SER C 159 LEU C 172 1 14 HELIX 35 35 PRO C 181 GLN C 185 5 5 HELIX 36 36 SER C 196 SER C 204 1 9 HELIX 37 37 GLY C 225 GLY C 231 1 7 HELIX 38 38 THR C 233 ARG C 239 1 7 HELIX 39 39 ASP C 259 VAL C 263 5 5 HELIX 40 40 ARG C 269 GLN C 290 1 22 SHEET 1 A 4 ASN A 64 ASP A 69 0 SHEET 2 A 4 PHE A 38 PHE A 43 1 N ASN A 41 O LEU A 68 SHEET 3 A 4 VAL A 95 ARG A 99 1 O VAL A 97 N LEU A 42 SHEET 4 A 4 ILE A 117 ASN A 119 1 O LEU A 118 N CYS A 96 SHEET 1 B 5 THR A 193 TYR A 194 0 SHEET 2 B 5 ARG A 175 SER A 179 1 N PHE A 178 O THR A 193 SHEET 3 B 5 THR A 149 HIS A 153 1 N ILE A 152 O LEU A 177 SHEET 4 B 5 VAL A 206 LEU A 209 1 O MET A 208 N SER A 151 SHEET 5 B 5 ILE A 245 MET A 247 1 O MET A 247 N LEU A 209 SHEET 1 C 4 ASN B 64 LEU B 68 0 SHEET 2 C 4 PHE B 38 PHE B 43 1 N ASN B 41 O LEU B 66 SHEET 3 C 4 VAL B 95 ARG B 99 1 O VAL B 97 N LEU B 42 SHEET 4 C 4 ILE B 117 GLY B 121 1 O LEU B 118 N CYS B 96 SHEET 1 D 5 THR B 193 TYR B 194 0 SHEET 2 D 5 ARG B 175 SER B 179 1 N PHE B 178 O THR B 193 SHEET 3 D 5 THR B 149 HIS B 153 1 N VAL B 150 O ARG B 175 SHEET 4 D 5 VAL B 206 LEU B 209 1 O MET B 208 N SER B 151 SHEET 5 D 5 ILE B 245 MET B 247 1 O ILE B 245 N VAL B 207 SHEET 1 E 4 ASN C 64 ASP C 69 0 SHEET 2 E 4 PHE C 38 PHE C 43 1 N ASN C 41 O LEU C 66 SHEET 3 E 4 VAL C 95 HIS C 100 1 O VAL C 97 N LEU C 42 SHEET 4 E 4 ILE C 117 ASP C 122 1 O LEU C 118 N CYS C 96 SHEET 1 F 5 THR C 193 TYR C 194 0 SHEET 2 F 5 ARG C 175 SER C 179 1 N PHE C 178 O THR C 193 SHEET 3 F 5 THR C 149 HIS C 153 1 N VAL C 150 O ARG C 175 SHEET 4 F 5 VAL C 206 LEU C 209 1 O MET C 208 N SER C 151 SHEET 5 F 5 ILE C 245 MET C 247 1 O ILE C 245 N VAL C 207 CISPEP 1 GLY A 123 CYS A 124 0 5.38 CISPEP 2 ALA A 250 PRO A 251 0 0.44 CISPEP 3 ALA B 250 PRO B 251 0 0.92 CISPEP 4 ALA C 250 PRO C 251 0 -2.22 SITE 1 AC1 11 SER A 47 THR A 48 ARG A 49 THR A 50 SITE 2 AC1 11 ARG A 99 HIS A 127 GLN A 130 PRO A 249 SITE 3 AC1 11 ALA A 250 HOH A 511 SER B 74 SITE 1 AC2 10 ASN A 67 HOH A 438 HOH A 446 HOH A 447 SITE 2 AC2 10 HOH A 478 HOH A 604 HOH A 606 ASN B 67 SITE 3 AC2 10 ASN C 67 HOH C 340 SITE 1 AC3 9 LYS A 59 HOH A 317 HOH A 344 HOH A 478 SITE 2 AC3 9 HOH A 497 HOH A 604 HOH A 606 LYS B 59 SITE 3 AC3 9 LYS C 59 SITE 1 AC4 4 SER A 11 THR A 12 ARG A 171 HOH A 418 SITE 1 AC5 5 GLN A 23 LYS A 26 GLU A 140 LYS A 272 SITE 2 AC5 5 HOH A 463 SITE 1 AC6 6 LYS A 272 LYS A 275 HOH A 406 HOH A 424 SITE 2 AC6 6 HOH A 429 HOH A 468 SITE 1 AC7 5 LYS A 241 ARG A 242 HIS A 243 HOH A 379 SITE 2 AC7 5 HOH A 403 SITE 1 AC8 9 SER B 47 THR B 48 ARG B 49 THR B 50 SITE 2 AC8 9 ARG B 99 HIS B 127 GLN B 130 PRO B 249 SITE 3 AC8 9 ALA B 250 SITE 1 AC9 5 GLN B 23 LYS B 26 GLU B 140 LYS B 272 SITE 2 AC9 5 HOH B 380 SITE 1 BC1 4 SER B 11 THR B 12 ARG B 171 HOH B 411 SITE 1 BC2 6 LYS B 272 LYS B 275 HOH B 392 HOH B 393 SITE 2 BC2 6 HOH B 414 HOH B 459 SITE 1 BC3 7 HOH A 329 THR B 144 PHE B 145 LYS B 146 SITE 2 BC3 7 HOH B 350 HOH B 368 HOH B 501 SITE 1 BC4 9 SER C 47 THR C 48 ARG C 49 THR C 50 SITE 2 BC4 9 ARG C 99 HIS C 127 GLN C 130 PRO C 249 SITE 3 BC4 9 ALA C 250 SITE 1 BC5 5 GLN C 23 LYS C 26 GLU C 140 LYS C 272 SITE 2 BC5 5 HOH C 572 SITE 1 BC6 6 LYS C 272 LYS C 275 HOH C 382 HOH C 383 SITE 2 BC6 6 HOH C 389 HOH C 405 SITE 1 BC7 5 SER C 11 THR C 12 ARG C 171 HOH C 363 SITE 2 BC7 5 HOH C 615 SITE 1 BC8 7 LYS C 16 TYR C 139 THR C 144 PHE C 145 SITE 2 BC8 7 LYS C 146 HOH C 359 HOH C 621 CRYST1 251.916 152.960 51.239 90.00 96.10 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003970 0.000000 0.000424 0.00000 SCALE2 0.000000 0.006538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019627 0.00000