HEADER LYASE 23-MAR-11 3R89 TITLE CRYSTAL STRUCTURE OF OROTIDINE 5-PHOSPHATE DECARBOXYLASE FROM TITLE 2 ANAEROCOCCUS PREVOTII DSM 20548 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMP DECARBOXYLASE; COMPND 5 EC: 4.1.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANAEROCOCCUS PREVOTII; SOURCE 3 ORGANISM_COMMON: PEPTOSTREPTOCOCCUS PREVOTII; SOURCE 4 ORGANISM_TAXID: 525919; SOURCE 5 STRAIN: ATCC 9321 / DSM 20548 / JCM 6508 / PC1; SOURCE 6 GENE: PYRF, APRE_0783; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PMCSG7 KEYWDS PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, OROTIDINE KEYWDS 2 5-PHOSPHATE DECARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.TESAR,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 16-OCT-24 3R89 1 SEQADV LINK REVDAT 1 06-APR-11 3R89 0 JRNL AUTH C.CHANG,C.TESAR,J.BEARDEN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE JRNL TITL 2 FROM ANAEROCOCCUS PREVOTII DSM 20548 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 48644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2948 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4908 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6615 ; 1.388 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 5.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;35.039 ;25.042 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 918 ;13.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;23.820 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3767 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2979 ; 0.761 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4793 ; 1.377 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1929 ; 2.568 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1822 ; 4.209 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3296 -4.0863 22.9604 REMARK 3 T TENSOR REMARK 3 T11: 0.0389 T22: 0.0236 REMARK 3 T33: 0.0423 T12: 0.0078 REMARK 3 T13: -0.0023 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.1813 L22: 0.1719 REMARK 3 L33: 0.5238 L12: 0.0777 REMARK 3 L13: 0.2224 L23: -0.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0230 S13: 0.0008 REMARK 3 S21: -0.0154 S22: -0.0026 S23: 0.0001 REMARK 3 S31: 0.0774 S32: 0.0483 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5771 16.1933 22.3212 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0287 REMARK 3 T33: 0.0460 T12: -0.0312 REMARK 3 T13: -0.0140 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.1637 L22: 0.1467 REMARK 3 L33: 0.8676 L12: -0.1426 REMARK 3 L13: 0.0858 L23: -0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.0246 S13: 0.0115 REMARK 3 S21: -0.0100 S22: 0.0017 S23: 0.0129 REMARK 3 S31: -0.1097 S32: 0.0934 S33: 0.0142 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8601 -0.8941 9.1904 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.0481 REMARK 3 T33: 0.0259 T12: -0.0002 REMARK 3 T13: -0.0021 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.3676 L22: 0.6888 REMARK 3 L33: 1.2121 L12: 0.3060 REMARK 3 L13: 0.2747 L23: -0.4306 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0412 S13: 0.0121 REMARK 3 S21: -0.0435 S22: 0.0067 S23: 0.0149 REMARK 3 S31: 0.0159 S32: -0.0959 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5562 -4.8843 48.7896 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0180 REMARK 3 T33: 0.0447 T12: -0.0030 REMARK 3 T13: -0.0014 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.2380 L22: 0.1132 REMARK 3 L33: 0.4632 L12: -0.0679 REMARK 3 L13: 0.2313 L23: 0.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0146 S13: -0.0173 REMARK 3 S21: 0.0149 S22: -0.0016 S23: 0.0069 REMARK 3 S31: 0.0627 S32: -0.0260 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 129 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3567 15.3157 50.4088 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.0167 REMARK 3 T33: 0.0402 T12: 0.0214 REMARK 3 T13: -0.0083 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1723 L22: 0.0583 REMARK 3 L33: 0.6989 L12: 0.0950 REMARK 3 L13: -0.0015 L23: -0.0625 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.0268 S13: -0.0012 REMARK 3 S21: 0.0070 S22: -0.0063 S23: -0.0022 REMARK 3 S31: -0.0999 S32: -0.0515 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 249 B 286 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1382 -2.5333 62.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0659 REMARK 3 T33: 0.0161 T12: -0.0014 REMARK 3 T13: -0.0034 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.3451 L22: 0.9554 REMARK 3 L33: 1.0633 L12: -0.4401 REMARK 3 L13: -0.0645 L23: 0.6938 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.0069 S13: 0.0347 REMARK 3 S21: 0.0608 S22: 0.0053 S23: -0.0620 REMARK 3 S31: 0.0774 S32: 0.0712 S33: -0.0246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49114 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.844 REMARK 200 RESOLUTION RANGE LOW (A) : 85.503 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXDE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1 M TRIS PH 7.0, 30% REMARK 280 (W/V) PEG-3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.75350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.08550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.42400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.08550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.75350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.42400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 287 REMARK 465 LEU B 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -2 OG REMARK 470 VAL A 286 CG1 CG2 REMARK 470 SER B -2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 97 52.53 38.51 REMARK 500 ALA A 102 -128.38 47.26 REMARK 500 LEU A 151 -82.83 -121.04 REMARK 500 THR A 202 -79.92 -92.91 REMARK 500 TYR A 214 59.47 -116.74 REMARK 500 SER A 249 -83.10 -108.46 REMARK 500 LYS A 265 41.82 -140.25 REMARK 500 ASN B -1 -81.03 170.29 REMARK 500 LYS B 97 57.91 33.30 REMARK 500 ALA B 102 -127.16 50.71 REMARK 500 LEU B 151 -82.75 -122.93 REMARK 500 THR B 202 -83.20 -91.34 REMARK 500 TYR B 214 60.26 -117.43 REMARK 500 SER B 249 -83.38 -104.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100376 RELATED DB: TARGETDB DBREF 3R89 A 1 287 UNP C7RH50 C7RH50_ANAPD 1 287 DBREF 3R89 B 1 287 UNP C7RH50 C7RH50_ANAPD 1 287 SEQADV 3R89 SER A -2 UNP C7RH50 EXPRESSION TAG SEQADV 3R89 ASN A -1 UNP C7RH50 EXPRESSION TAG SEQADV 3R89 ALA A 0 UNP C7RH50 EXPRESSION TAG SEQADV 3R89 SER B -2 UNP C7RH50 EXPRESSION TAG SEQADV 3R89 ASN B -1 UNP C7RH50 EXPRESSION TAG SEQADV 3R89 ALA B 0 UNP C7RH50 EXPRESSION TAG SEQRES 1 A 290 SER ASN ALA MSE LYS ILE ILE ASP LYS LEU TYR GLU LYS SEQRES 2 A 290 VAL SER LYS ASN GLY PHE VAL CYS ILE GLY LEU ASP SER SEQRES 3 A 290 SER ILE ASP TYR ILE PRO GLU ASN MSE LYS ALA GLY LYS SEQRES 4 A 290 SER VAL SER GLU ALA LEU PHE SER TYR ASN LYS GLU ILE SEQRES 5 A 290 ILE ASP GLN THR TYR ASP VAL CYS ALA ILE TYR LYS LEU SEQRES 6 A 290 GLN ILE ALA TYR TYR GLU SER TYR GLY ILE GLU GLY MSE SEQRES 7 A 290 ILE ALA TYR ARG ASP THR LEU SER TYR LEU ARG GLU LYS SEQRES 8 A 290 ASP LEU LEU SER ILE GLY ASP VAL LYS ARG SER ASP ILE SEQRES 9 A 290 ALA ALA SER ALA LYS MSE TYR ALA LYS ALA HIS PHE GLU SEQRES 10 A 290 GLY ASP PHE GLU THR ASP PHE ILE THR LEU ASN PRO TYR SEQRES 11 A 290 MSE GLY MSE ASP SER ILE GLU PRO TYR GLU GLU TYR ILE SEQRES 12 A 290 GLU LYS GLY ASP LYS GLY VAL PHE VAL LEU LEU ARG THR SEQRES 13 A 290 SER ASN PRO GLY ALA LYS ASP PHE GLU VAL LEU PRO VAL SEQRES 14 A 290 ASP GLY GLU GLU PHE PHE TYR LYS VAL GLY ASP LYS MSE SEQRES 15 A 290 ARG GLU LEU ASN GLU LYS TYR ILE GLY LYS SER GLY PHE SEQRES 16 A 290 GLY PRO ILE GLY LEU VAL VAL GLY ALA THR HIS SER GLU SEQRES 17 A 290 GLU VAL GLU LYS ILE ARG LYS ARG TYR ASP LYS MSE PHE SEQRES 18 A 290 PHE LEU ILE PRO GLY PHE GLY ALA GLN LYS ALA ASP SER SEQRES 19 A 290 MSE ASN VAL TYR LYS LEU LEU GLU GLY LEU ASN GLY GLY SEQRES 20 A 290 VAL VAL ASN SER SER ARG ALA ILE LEU LYS ASN TRP GLN SEQRES 21 A 290 ASN TYR GLU ASP GLY SER GLU LYS VAL GLY TYR TYR ALA SEQRES 22 A 290 ARG LYS LYS ALA ILE GLU THR TYR GLU GLU ILE LYS ALA SEQRES 23 A 290 ASN GLU VAL LEU SEQRES 1 B 290 SER ASN ALA MSE LYS ILE ILE ASP LYS LEU TYR GLU LYS SEQRES 2 B 290 VAL SER LYS ASN GLY PHE VAL CYS ILE GLY LEU ASP SER SEQRES 3 B 290 SER ILE ASP TYR ILE PRO GLU ASN MSE LYS ALA GLY LYS SEQRES 4 B 290 SER VAL SER GLU ALA LEU PHE SER TYR ASN LYS GLU ILE SEQRES 5 B 290 ILE ASP GLN THR TYR ASP VAL CYS ALA ILE TYR LYS LEU SEQRES 6 B 290 GLN ILE ALA TYR TYR GLU SER TYR GLY ILE GLU GLY MSE SEQRES 7 B 290 ILE ALA TYR ARG ASP THR LEU SER TYR LEU ARG GLU LYS SEQRES 8 B 290 ASP LEU LEU SER ILE GLY ASP VAL LYS ARG SER ASP ILE SEQRES 9 B 290 ALA ALA SER ALA LYS MSE TYR ALA LYS ALA HIS PHE GLU SEQRES 10 B 290 GLY ASP PHE GLU THR ASP PHE ILE THR LEU ASN PRO TYR SEQRES 11 B 290 MSE GLY MSE ASP SER ILE GLU PRO TYR GLU GLU TYR ILE SEQRES 12 B 290 GLU LYS GLY ASP LYS GLY VAL PHE VAL LEU LEU ARG THR SEQRES 13 B 290 SER ASN PRO GLY ALA LYS ASP PHE GLU VAL LEU PRO VAL SEQRES 14 B 290 ASP GLY GLU GLU PHE PHE TYR LYS VAL GLY ASP LYS MSE SEQRES 15 B 290 ARG GLU LEU ASN GLU LYS TYR ILE GLY LYS SER GLY PHE SEQRES 16 B 290 GLY PRO ILE GLY LEU VAL VAL GLY ALA THR HIS SER GLU SEQRES 17 B 290 GLU VAL GLU LYS ILE ARG LYS ARG TYR ASP LYS MSE PHE SEQRES 18 B 290 PHE LEU ILE PRO GLY PHE GLY ALA GLN LYS ALA ASP SER SEQRES 19 B 290 MSE ASN VAL TYR LYS LEU LEU GLU GLY LEU ASN GLY GLY SEQRES 20 B 290 VAL VAL ASN SER SER ARG ALA ILE LEU LYS ASN TRP GLN SEQRES 21 B 290 ASN TYR GLU ASP GLY SER GLU LYS VAL GLY TYR TYR ALA SEQRES 22 B 290 ARG LYS LYS ALA ILE GLU THR TYR GLU GLU ILE LYS ALA SEQRES 23 B 290 ASN GLU VAL LEU MODRES 3R89 MSE A 1 MET SELENOMETHIONINE MODRES 3R89 MSE A 32 MET SELENOMETHIONINE MODRES 3R89 MSE A 75 MET SELENOMETHIONINE MODRES 3R89 MSE A 107 MET SELENOMETHIONINE MODRES 3R89 MSE A 128 MET SELENOMETHIONINE MODRES 3R89 MSE A 130 MET SELENOMETHIONINE MODRES 3R89 MSE A 179 MET SELENOMETHIONINE MODRES 3R89 MSE A 217 MET SELENOMETHIONINE MODRES 3R89 MSE A 232 MET SELENOMETHIONINE MODRES 3R89 MSE B 1 MET SELENOMETHIONINE MODRES 3R89 MSE B 32 MET SELENOMETHIONINE MODRES 3R89 MSE B 75 MET SELENOMETHIONINE MODRES 3R89 MSE B 107 MET SELENOMETHIONINE MODRES 3R89 MSE B 128 MET SELENOMETHIONINE MODRES 3R89 MSE B 130 MET SELENOMETHIONINE MODRES 3R89 MSE B 179 MET SELENOMETHIONINE MODRES 3R89 MSE B 217 MET SELENOMETHIONINE MODRES 3R89 MSE B 232 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 32 8 HET MSE A 75 8 HET MSE A 107 8 HET MSE A 128 8 HET MSE A 130 8 HET MSE A 179 8 HET MSE A 217 8 HET MSE A 232 8 HET MSE B 1 8 HET MSE B 32 8 HET MSE B 75 8 HET MSE B 107 8 HET MSE B 128 8 HET MSE B 130 8 HET MSE B 179 8 HET MSE B 217 8 HET MSE B 232 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 HOH *440(H2 O) HELIX 1 1 LYS A 2 GLY A 15 1 14 HELIX 2 2 SER A 24 ILE A 28 5 5 HELIX 3 3 PRO A 29 ALA A 34 1 6 HELIX 4 4 SER A 37 TYR A 54 1 18 HELIX 5 5 ILE A 64 SER A 69 1 6 HELIX 6 6 TYR A 70 LYS A 88 1 19 HELIX 7 7 ILE A 101 GLU A 114 1 14 HELIX 8 8 GLY A 115 GLU A 118 5 4 HELIX 9 9 GLY A 129 PRO A 135 5 7 HELIX 10 10 TYR A 136 LYS A 142 1 7 HELIX 11 11 ASN A 155 ASP A 160 5 6 HELIX 12 12 PHE A 171 GLU A 184 1 14 HELIX 13 13 LYS A 185 ILE A 187 5 3 HELIX 14 14 HIS A 203 TYR A 214 1 12 HELIX 15 15 GLN A 227 LYS A 236 1 10 HELIX 16 16 SER A 249 LYS A 254 1 6 HELIX 17 17 ASN A 255 TYR A 259 5 5 HELIX 18 18 ASP A 261 GLU A 264 5 4 HELIX 19 19 LYS A 265 ALA A 283 1 19 HELIX 20 20 LYS B 2 GLY B 15 1 14 HELIX 21 21 SER B 24 ILE B 28 5 5 HELIX 22 22 PRO B 29 ALA B 34 1 6 HELIX 23 23 SER B 37 TYR B 54 1 18 HELIX 24 24 ILE B 64 SER B 69 1 6 HELIX 25 25 TYR B 70 LYS B 88 1 19 HELIX 26 26 ILE B 101 GLU B 114 1 14 HELIX 27 27 GLY B 115 GLU B 118 5 4 HELIX 28 28 GLY B 129 PRO B 135 5 7 HELIX 29 29 TYR B 136 GLU B 141 1 6 HELIX 30 30 ASN B 155 ASP B 160 5 6 HELIX 31 31 PHE B 171 LYS B 185 1 15 HELIX 32 32 HIS B 203 TYR B 214 1 12 HELIX 33 33 GLN B 227 LYS B 236 1 10 HELIX 34 34 SER B 249 LYS B 254 1 6 HELIX 35 35 ASN B 255 TYR B 259 5 5 HELIX 36 36 ASP B 261 GLU B 264 5 4 HELIX 37 37 LYS B 265 ALA B 283 1 19 SHEET 1 A 9 VAL A 17 GLY A 20 0 SHEET 2 A 9 ILE A 59 GLN A 63 1 O LYS A 61 N ILE A 19 SHEET 3 A 9 SER A 92 ARG A 98 1 O ILE A 93 N LEU A 62 SHEET 4 A 9 PHE A 121 LEU A 124 1 O PHE A 121 N GLY A 94 SHEET 5 A 9 GLY A 146 ARG A 152 1 O LEU A 150 N LEU A 124 SHEET 6 A 9 GLY A 193 VAL A 199 1 O GLY A 196 N VAL A 147 SHEET 7 A 9 MSE A 217 ILE A 221 1 O LEU A 220 N LEU A 197 SHEET 8 A 9 GLY A 244 SER A 248 1 O ASN A 247 N ILE A 221 SHEET 9 A 9 VAL A 17 GLY A 20 1 N GLY A 20 O SER A 248 SHEET 1 B 2 PRO A 165 VAL A 166 0 SHEET 2 B 2 GLU A 169 GLU A 170 -1 O GLU A 169 N VAL A 166 SHEET 1 C 9 VAL B 17 GLY B 20 0 SHEET 2 C 9 ILE B 59 GLN B 63 1 O LYS B 61 N ILE B 19 SHEET 3 C 9 SER B 92 ARG B 98 1 O ILE B 93 N LEU B 62 SHEET 4 C 9 PHE B 121 LEU B 124 1 O PHE B 121 N GLY B 94 SHEET 5 C 9 GLY B 146 ARG B 152 1 O PHE B 148 N ILE B 122 SHEET 6 C 9 GLY B 193 VAL B 199 1 O GLY B 196 N VAL B 147 SHEET 7 C 9 MSE B 217 ILE B 221 1 O LEU B 220 N LEU B 197 SHEET 8 C 9 GLY B 244 SER B 248 1 O VAL B 245 N ILE B 221 SHEET 9 C 9 VAL B 17 GLY B 20 1 N CYS B 18 O VAL B 246 SHEET 1 D 2 PRO B 165 VAL B 166 0 SHEET 2 D 2 GLU B 169 GLU B 170 -1 O GLU B 169 N VAL B 166 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.34 LINK C ASN A 31 N MSE A 32 1555 1555 1.32 LINK C MSE A 32 N LYS A 33 1555 1555 1.33 LINK C GLY A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N ILE A 76 1555 1555 1.34 LINK C LYS A 106 N MSE A 107 1555 1555 1.32 LINK C MSE A 107 N TYR A 108 1555 1555 1.33 LINK C TYR A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N GLY A 129 1555 1555 1.33 LINK C GLY A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ASP A 131 1555 1555 1.34 LINK C LYS A 178 N MSE A 179 1555 1555 1.33 LINK C MSE A 179 N ARG A 180 1555 1555 1.33 LINK C LYS A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N PHE A 218 1555 1555 1.33 LINK C SER A 231 N MSE A 232 1555 1555 1.34 LINK C MSE A 232 N ASN A 233 1555 1555 1.34 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C ASN B 31 N MSE B 32 1555 1555 1.34 LINK C MSE B 32 N LYS B 33 1555 1555 1.33 LINK C GLY B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N ILE B 76 1555 1555 1.33 LINK C LYS B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N TYR B 108 1555 1555 1.33 LINK C TYR B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N GLY B 129 1555 1555 1.34 LINK C GLY B 129 N MSE B 130 1555 1555 1.34 LINK C MSE B 130 N ASP B 131 1555 1555 1.33 LINK C LYS B 178 N MSE B 179 1555 1555 1.33 LINK C MSE B 179 N ARG B 180 1555 1555 1.33 LINK C LYS B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N PHE B 218 1555 1555 1.33 LINK C SER B 231 N MSE B 232 1555 1555 1.33 LINK C MSE B 232 N ASN B 233 1555 1555 1.33 CISPEP 1 SER B -2 ASN B -1 0 -15.08 CRYST1 39.507 108.848 138.171 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007237 0.00000