HEADER CELL INVASION 26-MAR-11 3R9V TITLE COCRYSTAL STRUCTURE OF PROTEOLYTICALLY TRUNCATED FORM OF IPAD FROM TITLE 2 SHIGELLA FLEXNERI BOUND TO DEOXYCHOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INVASIN IPAD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 39-322; COMPND 5 SYNONYM: 36 KDA MEMBRANE ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPAD, CP0126; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TYPE III SECRETION SYSTEM, TIP PROTEIN, DEOXYCHOLATE, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR M.L.BARTA,N.E.DICKENSON,W.L.PICKING,W.D.PICKING,B.V.GEISBRECHT REVDAT 3 13-SEP-23 3R9V 1 REMARK SEQADV REVDAT 2 04-APR-12 3R9V 1 REVDAT 1 07-DEC-11 3R9V 0 JRNL AUTH M.L.BARTA,M.GURAGAIN,P.ADAM,N.E.DICKENSON,M.PATIL, JRNL AUTH 2 B.V.GEISBRECHT,W.L.PICKING,W.D.PICKING JRNL TITL IDENTIFICATION OF THE BILE SALT BINDING SITE ON IPAD FROM JRNL TITL 2 SHIGELLA FLEXNERI AND THE INFLUENCE OF LIGAND BINDING ON JRNL TITL 3 IPAD STRUCTURE. JRNL REF PROTEINS V. 80 935 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22423359 JRNL DOI 10.1002/PROT.23251 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 39374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.2851 - 4.5628 0.99 2846 152 0.2193 0.2203 REMARK 3 2 4.5628 - 3.6251 1.00 2778 149 0.2005 0.1973 REMARK 3 3 3.6251 - 3.1678 1.00 2762 147 0.2250 0.2496 REMARK 3 4 3.1678 - 2.8786 1.00 2775 148 0.2394 0.2815 REMARK 3 5 2.8786 - 2.6726 1.00 2740 147 0.2364 0.2711 REMARK 3 6 2.6726 - 2.5151 1.00 2732 147 0.2284 0.2358 REMARK 3 7 2.5151 - 2.3893 1.00 2739 145 0.2263 0.2525 REMARK 3 8 2.3893 - 2.2853 0.99 2726 147 0.2321 0.2819 REMARK 3 9 2.2853 - 2.1974 1.00 2707 145 0.2498 0.2995 REMARK 3 10 2.1974 - 2.1216 1.00 2720 145 0.2312 0.2492 REMARK 3 11 2.1216 - 2.0553 0.99 2727 146 0.2323 0.2835 REMARK 3 12 2.0553 - 1.9966 0.98 2622 140 0.2478 0.2766 REMARK 3 13 1.9966 - 1.9441 0.91 2515 135 0.2787 0.3359 REMARK 3 14 1.9441 - 1.8966 0.74 1986 106 0.3056 0.3305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 41.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.95450 REMARK 3 B22 (A**2) : 3.96240 REMARK 3 B33 (A**2) : -10.91680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.72830 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2944 REMARK 3 ANGLE : 1.135 3986 REMARK 3 CHIRALITY : 0.066 451 REMARK 3 PLANARITY : 0.003 502 REMARK 3 DIHEDRAL : 13.956 1069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LIQUID NITROGEN REMARK 200 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45100 REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2J0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M HEPES, 22% (W/V) POLY(ACRYLIC ACID SODIUM SALT) 5100, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.85950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 HIS A 39 REMARK 465 PRO A 40 REMARK 465 VAL A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 LEU A 44 REMARK 465 THR A 45 REMARK 465 MET A 46 REMARK 465 LEU A 47 REMARK 465 ASN A 48 REMARK 465 ASP A 49 REMARK 465 THR A 50 REMARK 465 LEU A 51 REMARK 465 HIS A 52 REMARK 465 ASN A 53 REMARK 465 ILE A 54 REMARK 465 ARG A 55 REMARK 465 THR A 56 REMARK 465 THR A 57 REMARK 465 ASN A 58 REMARK 465 GLN A 59 REMARK 465 ALA A 60 REMARK 465 LEU A 61 REMARK 465 LYS A 62 REMARK 465 LYS A 63 REMARK 465 GLU A 64 REMARK 465 LEU A 65 REMARK 465 SER A 66 REMARK 465 GLN A 67 REMARK 465 LYS A 68 REMARK 465 THR A 69 REMARK 465 LEU A 70 REMARK 465 THR A 71 REMARK 465 LYS A 72 REMARK 465 THR A 73 REMARK 465 SER A 74 REMARK 465 LEU A 75 REMARK 465 GLU A 76 REMARK 465 GLU A 77 REMARK 465 ILE A 78 REMARK 465 ALA A 79 REMARK 465 LEU A 80 REMARK 465 HIS A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 GLN A 84 REMARK 465 ILE A 85 REMARK 465 SER A 86 REMARK 465 MET A 87 REMARK 465 ASP A 88 REMARK 465 VAL A 89 REMARK 465 ASN A 90 REMARK 465 LYS A 91 REMARK 465 SER A 92 REMARK 465 ALA A 93 REMARK 465 GLN A 94 REMARK 465 LEU A 95 REMARK 465 LEU A 96 REMARK 465 ASP A 97 REMARK 465 ILE A 98 REMARK 465 LEU A 99 REMARK 465 SER A 100 REMARK 465 ARG A 101 REMARK 465 ASN A 102 REMARK 465 GLU A 103 REMARK 465 TYR A 104 REMARK 465 PRO A 105 REMARK 465 ILE A 106 REMARK 465 ASN A 107 REMARK 465 LYS A 108 REMARK 465 ASP A 109 REMARK 465 ALA A 110 REMARK 465 ARG A 111 REMARK 465 GLU A 112 REMARK 465 LEU A 113 REMARK 465 LEU A 114 REMARK 465 HIS A 115 REMARK 465 SER A 116 REMARK 465 ALA A 117 REMARK 465 PRO A 118 REMARK 465 LYS A 119 REMARK 465 GLU A 120 REMARK 465 ALA A 121 REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 SER A 322 REMARK 465 GLY B 37 REMARK 465 SER B 38 REMARK 465 HIS B 39 REMARK 465 PRO B 40 REMARK 465 VAL B 41 REMARK 465 SER B 42 REMARK 465 SER B 43 REMARK 465 LEU B 44 REMARK 465 THR B 45 REMARK 465 MET B 46 REMARK 465 LEU B 47 REMARK 465 ASN B 48 REMARK 465 ASP B 49 REMARK 465 THR B 50 REMARK 465 LEU B 51 REMARK 465 HIS B 52 REMARK 465 ASN B 53 REMARK 465 ILE B 54 REMARK 465 ARG B 55 REMARK 465 THR B 56 REMARK 465 THR B 57 REMARK 465 ASN B 58 REMARK 465 GLN B 59 REMARK 465 ALA B 60 REMARK 465 LEU B 61 REMARK 465 LYS B 62 REMARK 465 LYS B 63 REMARK 465 GLU B 64 REMARK 465 LEU B 65 REMARK 465 SER B 66 REMARK 465 GLN B 67 REMARK 465 LYS B 68 REMARK 465 THR B 69 REMARK 465 LEU B 70 REMARK 465 THR B 71 REMARK 465 LYS B 72 REMARK 465 THR B 73 REMARK 465 SER B 74 REMARK 465 LEU B 75 REMARK 465 GLU B 76 REMARK 465 GLU B 77 REMARK 465 ILE B 78 REMARK 465 ALA B 79 REMARK 465 LEU B 80 REMARK 465 HIS B 81 REMARK 465 SER B 82 REMARK 465 SER B 83 REMARK 465 GLN B 84 REMARK 465 ILE B 85 REMARK 465 SER B 86 REMARK 465 MET B 87 REMARK 465 ASP B 88 REMARK 465 VAL B 89 REMARK 465 ASN B 90 REMARK 465 LYS B 91 REMARK 465 SER B 92 REMARK 465 ALA B 93 REMARK 465 GLN B 94 REMARK 465 LEU B 95 REMARK 465 LEU B 96 REMARK 465 ASP B 97 REMARK 465 ILE B 98 REMARK 465 LEU B 99 REMARK 465 SER B 100 REMARK 465 ARG B 101 REMARK 465 ASN B 102 REMARK 465 GLU B 103 REMARK 465 TYR B 104 REMARK 465 PRO B 105 REMARK 465 ILE B 106 REMARK 465 ASN B 107 REMARK 465 LYS B 108 REMARK 465 ASP B 109 REMARK 465 ALA B 110 REMARK 465 ARG B 111 REMARK 465 GLU B 112 REMARK 465 LEU B 113 REMARK 465 LEU B 114 REMARK 465 HIS B 115 REMARK 465 SER B 116 REMARK 465 ALA B 117 REMARK 465 PRO B 118 REMARK 465 LYS B 119 REMARK 465 GLU B 120 REMARK 465 ALA B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 ASP B 124 REMARK 465 LEU B 174 REMARK 465 ALA B 175 REMARK 465 GLY B 176 REMARK 465 TRP B 177 REMARK 465 ILE B 178 REMARK 465 SER B 179 REMARK 465 PRO B 180 REMARK 465 GLY B 181 REMARK 465 GLY B 182 REMARK 465 ASN B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 ASN B 186 REMARK 465 SER B 187 REMARK 465 VAL B 188 REMARK 465 LYS B 189 REMARK 465 LEU B 190 REMARK 465 GLN B 191 REMARK 465 VAL B 192 REMARK 465 ASN B 193 REMARK 465 SER B 194 REMARK 465 VAL B 270 REMARK 465 LEU B 271 REMARK 465 ASP B 272 REMARK 465 ASN B 273 REMARK 465 ALA B 274 REMARK 465 LYS B 275 REMARK 465 TYR B 276 REMARK 465 GLN B 277 REMARK 465 ALA B 278 REMARK 465 THR B 318 REMARK 465 ILE B 319 REMARK 465 SER B 320 REMARK 465 SER B 321 REMARK 465 SER B 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 149 -66.89 -137.49 REMARK 500 ASP A 184 112.70 57.71 REMARK 500 ASN A 216 -145.80 61.17 REMARK 500 ASN A 241 -79.80 173.67 REMARK 500 ASN A 266 -139.11 -149.06 REMARK 500 TYR B 149 -64.63 -131.30 REMARK 500 ASN B 216 -147.38 62.30 REMARK 500 ASN B 241 101.32 115.09 REMARK 500 ASN B 266 -84.77 -108.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 240 ASN A 241 146.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 324 DBREF 3R9V A 39 322 UNP P18013 IPAD_SHIFL 39 322 DBREF 3R9V B 39 322 UNP P18013 IPAD_SHIFL 39 322 SEQADV 3R9V GLY A 37 UNP P18013 EXPRESSION TAG SEQADV 3R9V SER A 38 UNP P18013 EXPRESSION TAG SEQADV 3R9V SER A 322 UNP P18013 CYS 322 ENGINEERED MUTATION SEQADV 3R9V GLY B 37 UNP P18013 EXPRESSION TAG SEQADV 3R9V SER B 38 UNP P18013 EXPRESSION TAG SEQADV 3R9V SER B 322 UNP P18013 CYS 322 ENGINEERED MUTATION SEQRES 1 A 286 GLY SER HIS PRO VAL SER SER LEU THR MET LEU ASN ASP SEQRES 2 A 286 THR LEU HIS ASN ILE ARG THR THR ASN GLN ALA LEU LYS SEQRES 3 A 286 LYS GLU LEU SER GLN LYS THR LEU THR LYS THR SER LEU SEQRES 4 A 286 GLU GLU ILE ALA LEU HIS SER SER GLN ILE SER MET ASP SEQRES 5 A 286 VAL ASN LYS SER ALA GLN LEU LEU ASP ILE LEU SER ARG SEQRES 6 A 286 ASN GLU TYR PRO ILE ASN LYS ASP ALA ARG GLU LEU LEU SEQRES 7 A 286 HIS SER ALA PRO LYS GLU ALA GLU LEU ASP GLY ASP GLN SEQRES 8 A 286 MET ILE SER HIS ARG GLU LEU TRP ALA LYS ILE ALA ASN SEQRES 9 A 286 SER ILE ASN ASP ILE ASN GLU GLN TYR LEU LYS VAL TYR SEQRES 10 A 286 GLU HIS ALA VAL SER SER TYR THR GLN MET TYR GLN ASP SEQRES 11 A 286 PHE SER ALA VAL LEU SER SER LEU ALA GLY TRP ILE SER SEQRES 12 A 286 PRO GLY GLY ASN ASP GLY ASN SER VAL LYS LEU GLN VAL SEQRES 13 A 286 ASN SER LEU LYS LYS ALA LEU GLU GLU LEU LYS GLU LYS SEQRES 14 A 286 TYR LYS ASP LYS PRO LEU TYR PRO ALA ASN ASN THR VAL SEQRES 15 A 286 SER GLN GLU GLN ALA ASN LYS TRP LEU THR GLU LEU GLY SEQRES 16 A 286 GLY THR ILE GLY LYS VAL SER GLN LYS ASN GLY GLY TYR SEQRES 17 A 286 VAL VAL SER ILE ASN MET THR PRO ILE ASP ASN MET LEU SEQRES 18 A 286 LYS SER LEU ASP ASN LEU GLY GLY ASN GLY GLU VAL VAL SEQRES 19 A 286 LEU ASP ASN ALA LYS TYR GLN ALA TRP ASN ALA GLY PHE SEQRES 20 A 286 SER ALA GLU ASP GLU THR MET LYS ASN ASN LEU GLN THR SEQRES 21 A 286 LEU VAL GLN LYS TYR SER ASN ALA ASN SER ILE PHE ASP SEQRES 22 A 286 ASN LEU VAL LYS VAL LEU SER SER THR ILE SER SER SER SEQRES 1 B 286 GLY SER HIS PRO VAL SER SER LEU THR MET LEU ASN ASP SEQRES 2 B 286 THR LEU HIS ASN ILE ARG THR THR ASN GLN ALA LEU LYS SEQRES 3 B 286 LYS GLU LEU SER GLN LYS THR LEU THR LYS THR SER LEU SEQRES 4 B 286 GLU GLU ILE ALA LEU HIS SER SER GLN ILE SER MET ASP SEQRES 5 B 286 VAL ASN LYS SER ALA GLN LEU LEU ASP ILE LEU SER ARG SEQRES 6 B 286 ASN GLU TYR PRO ILE ASN LYS ASP ALA ARG GLU LEU LEU SEQRES 7 B 286 HIS SER ALA PRO LYS GLU ALA GLU LEU ASP GLY ASP GLN SEQRES 8 B 286 MET ILE SER HIS ARG GLU LEU TRP ALA LYS ILE ALA ASN SEQRES 9 B 286 SER ILE ASN ASP ILE ASN GLU GLN TYR LEU LYS VAL TYR SEQRES 10 B 286 GLU HIS ALA VAL SER SER TYR THR GLN MET TYR GLN ASP SEQRES 11 B 286 PHE SER ALA VAL LEU SER SER LEU ALA GLY TRP ILE SER SEQRES 12 B 286 PRO GLY GLY ASN ASP GLY ASN SER VAL LYS LEU GLN VAL SEQRES 13 B 286 ASN SER LEU LYS LYS ALA LEU GLU GLU LEU LYS GLU LYS SEQRES 14 B 286 TYR LYS ASP LYS PRO LEU TYR PRO ALA ASN ASN THR VAL SEQRES 15 B 286 SER GLN GLU GLN ALA ASN LYS TRP LEU THR GLU LEU GLY SEQRES 16 B 286 GLY THR ILE GLY LYS VAL SER GLN LYS ASN GLY GLY TYR SEQRES 17 B 286 VAL VAL SER ILE ASN MET THR PRO ILE ASP ASN MET LEU SEQRES 18 B 286 LYS SER LEU ASP ASN LEU GLY GLY ASN GLY GLU VAL VAL SEQRES 19 B 286 LEU ASP ASN ALA LYS TYR GLN ALA TRP ASN ALA GLY PHE SEQRES 20 B 286 SER ALA GLU ASP GLU THR MET LYS ASN ASN LEU GLN THR SEQRES 21 B 286 LEU VAL GLN LYS TYR SER ASN ALA ASN SER ILE PHE ASP SEQRES 22 B 286 ASN LEU VAL LYS VAL LEU SER SER THR ILE SER SER SER HET GOL A3968 6 HET GOL A 323 6 HET GOL A 324 6 HET DXC B 1 28 HET DXC B 323 28 HETNAM GOL GLYCEROL HETNAM DXC (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DXC DEOXYCHOLIC ACID FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 DXC 2(C24 H40 O4) FORMUL 8 HOH *226(H2 O) HELIX 1 1 HIS A 131 TYR A 149 1 19 HELIX 2 2 TYR A 149 ALA A 175 1 27 HELIX 3 3 GLN A 191 LYS A 207 1 17 HELIX 4 4 SER A 219 GLY A 231 1 13 HELIX 5 5 MET A 250 LEU A 263 1 14 HELIX 6 6 ASP A 272 THR A 318 1 47 HELIX 7 7 HIS B 131 TYR B 149 1 19 HELIX 8 8 TYR B 149 SER B 173 1 25 HELIX 9 9 LEU B 195 TYR B 206 1 12 HELIX 10 10 SER B 219 GLY B 231 1 13 HELIX 11 11 MET B 250 LEU B 263 1 14 HELIX 12 12 TRP B 279 SER B 317 1 39 SHEET 1 A 2 MET A 128 SER A 130 0 SHEET 2 A 2 MET B 128 SER B 130 -1 O ILE B 129 N ILE A 129 SHEET 1 B 3 ILE A 178 GLY A 181 0 SHEET 2 B 3 SER A 187 LEU A 190 -1 O LYS A 189 N SER A 179 SHEET 3 B 3 VAL A 269 LEU A 271 -1 O LEU A 271 N VAL A 188 SHEET 1 C 2 GLY A 235 GLN A 239 0 SHEET 2 C 2 TYR A 244 ILE A 248 -1 O SER A 247 N LYS A 236 SHEET 1 D 2 GLY B 235 GLN B 239 0 SHEET 2 D 2 TYR B 244 ILE B 248 -1 O SER B 247 N LYS B 236 CISPEP 1 GLY A 185 ASN A 186 0 0.73 CISPEP 2 TYR A 212 PRO A 213 0 -1.58 CISPEP 3 TYR B 212 PRO B 213 0 -1.38 SITE 1 AC1 4 ILE A 129 HIS B 131 VAL B 314 HOH B 377 SITE 1 AC2 4 TRP B 135 VAL B 312 LEU B 315 SER B 316 SITE 1 AC3 3 SER A 173 GLY A 176 TRP A 177 SITE 1 AC4 4 ASN A 280 SER A 284 ASP A 287 HOH A 418 SITE 1 AC5 4 GLU A 286 THR A 289 HOH A 375 HOH A 453 CRYST1 62.974 43.719 93.757 90.00 97.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015880 0.000000 0.002068 0.00000 SCALE2 0.000000 0.022873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010756 0.00000