data_3R9W # _entry.id 3R9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R9W pdb_00003r9w 10.2210/pdb3r9w/pdb NDB NA1070 ? ? RCSB RCSB064672 ? ? WWPDB D_1000064672 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EGA 'Crystal structure of Era' unspecified PDB 3IEU 'Crystal structure of Era in complex with GDP' unspecified PDB 3IEV 'Crystal structure of Era in complex with MgGDPNP and nucleotides 1531-1542 of 16S ribosomal RNA' unspecified # _pdbx_database_status.entry_id 3R9W _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tu, C.' 1 ? 'Ji, X.' 2 0000-0001-6942-1514 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA. ; Proc.Natl.Acad.Sci.USA 108 10156 10161 2011 PNASA6 US 0027-8424 0040 ? 21646538 10.1073/pnas.1017679108 1 ;Structure of ERA in complex with the 3' end of 16S rRNA: Implications for ribosome biogenesis ; Proc.Natl.Acad.Sci.USA 106 14843 14848 2009 PNASA6 US 0027-8424 0040 ? 19706445 10.1073/pnas.0904032106 2 'Crystal structure of ERA: A GTPase-dependent cell cycle regulator containing an RNA binding motif' Proc.Natl.Acad.Sci.USA 96 8396 8401 1999 PNASA6 US 0027-8424 0040 ? 10411886 10.1073/pnas.96.15.8396 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tu, C.' 1 ? primary 'Zhou, X.' 2 ? primary 'Tarasov, S.G.' 3 ? primary 'Tropea, J.E.' 4 ? primary 'Austin, B.P.' 5 ? primary 'Waugh, D.S.' 6 ? primary 'Court, D.L.' 7 ? primary 'Ji, X.' 8 0000-0001-6942-1514 1 'Tu, C.' 9 ? 1 'Zhou, X.' 10 ? 1 'Tropea, J.E.' 11 ? 1 'Austin, B.P.' 12 ? 1 'Waugh, D.S.' 13 ? 1 'Court, L.D.' 14 ? 1 'Ji, X.' 15 ? 2 'Chen, X.' 16 ? 2 'Court, L.D.' 17 ? 2 'Ji, X.' 18 ? # _cell.entry_id 3R9W _cell.length_a 88.946 _cell.length_b 85.604 _cell.length_c 67.184 _cell.angle_alpha 90.00 _cell.angle_beta 111.20 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3R9W _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPase Era' 34765.027 1 ? ? ? ? 2 polymer syn RNA301 10905.535 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 5 ? ? ? ? 6 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 2 ? ? ? ? 7 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 8 water nat water 18.015 91 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HHHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHS MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI SALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIK GEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYAL ; ;HHHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHS MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI SALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIK GEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYAL ; A ? 2 polyribonucleotide no no CAACCGUAGGGGAACCUGCGGUUGGAUCACCUCC CAACCGUAGGGGAACCUGCGGUUGGAUCACCUCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 MET n 1 8 LYS n 1 9 VAL n 1 10 GLY n 1 11 TYR n 1 12 VAL n 1 13 ALA n 1 14 ILE n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 PRO n 1 19 ASN n 1 20 VAL n 1 21 GLY n 1 22 LYS n 1 23 SER n 1 24 THR n 1 25 LEU n 1 26 LEU n 1 27 ASN n 1 28 ASN n 1 29 LEU n 1 30 LEU n 1 31 GLY n 1 32 THR n 1 33 LYS n 1 34 VAL n 1 35 SER n 1 36 ILE n 1 37 ILE n 1 38 SER n 1 39 PRO n 1 40 LYS n 1 41 ALA n 1 42 GLY n 1 43 THR n 1 44 THR n 1 45 ARG n 1 46 MET n 1 47 ARG n 1 48 VAL n 1 49 LEU n 1 50 GLY n 1 51 VAL n 1 52 LYS n 1 53 ASN n 1 54 ILE n 1 55 PRO n 1 56 ASN n 1 57 GLU n 1 58 ALA n 1 59 GLN n 1 60 ILE n 1 61 ILE n 1 62 PHE n 1 63 LEU n 1 64 ASP n 1 65 THR n 1 66 PRO n 1 67 GLY n 1 68 ILE n 1 69 TYR n 1 70 GLU n 1 71 PRO n 1 72 LYS n 1 73 LYS n 1 74 SER n 1 75 ASP n 1 76 VAL n 1 77 LEU n 1 78 GLY n 1 79 HIS n 1 80 SER n 1 81 MET n 1 82 VAL n 1 83 GLU n 1 84 ILE n 1 85 ALA n 1 86 LYS n 1 87 GLN n 1 88 SER n 1 89 LEU n 1 90 GLU n 1 91 GLU n 1 92 ALA n 1 93 ASP n 1 94 VAL n 1 95 ILE n 1 96 LEU n 1 97 PHE n 1 98 MET n 1 99 ILE n 1 100 ASP n 1 101 ALA n 1 102 THR n 1 103 GLU n 1 104 GLY n 1 105 TRP n 1 106 ARG n 1 107 PRO n 1 108 ARG n 1 109 ASP n 1 110 GLU n 1 111 GLU n 1 112 ILE n 1 113 TYR n 1 114 GLN n 1 115 ASN n 1 116 PHE n 1 117 ILE n 1 118 LYS n 1 119 PRO n 1 120 LEU n 1 121 ASN n 1 122 LYS n 1 123 PRO n 1 124 VAL n 1 125 ILE n 1 126 VAL n 1 127 VAL n 1 128 ILE n 1 129 ASN n 1 130 LYS n 1 131 ILE n 1 132 ASP n 1 133 LYS n 1 134 ILE n 1 135 GLY n 1 136 PRO n 1 137 ALA n 1 138 LYS n 1 139 ASN n 1 140 VAL n 1 141 LEU n 1 142 PRO n 1 143 LEU n 1 144 ILE n 1 145 ASP n 1 146 GLU n 1 147 ILE n 1 148 HIS n 1 149 LYS n 1 150 LYS n 1 151 HIS n 1 152 PRO n 1 153 GLU n 1 154 LEU n 1 155 THR n 1 156 GLU n 1 157 ILE n 1 158 VAL n 1 159 PRO n 1 160 ILE n 1 161 SER n 1 162 ALA n 1 163 LEU n 1 164 LYS n 1 165 GLY n 1 166 ALA n 1 167 ASN n 1 168 LEU n 1 169 ASP n 1 170 GLU n 1 171 LEU n 1 172 VAL n 1 173 LYS n 1 174 THR n 1 175 ILE n 1 176 LEU n 1 177 LYS n 1 178 TYR n 1 179 LEU n 1 180 PRO n 1 181 GLU n 1 182 GLY n 1 183 GLU n 1 184 PRO n 1 185 LEU n 1 186 PHE n 1 187 PRO n 1 188 GLU n 1 189 ASP n 1 190 MET n 1 191 ILE n 1 192 THR n 1 193 ASP n 1 194 LEU n 1 195 PRO n 1 196 LEU n 1 197 ARG n 1 198 LEU n 1 199 LEU n 1 200 ALA n 1 201 ALA n 1 202 GLU n 1 203 ILE n 1 204 VAL n 1 205 ARG n 1 206 GLU n 1 207 LYS n 1 208 ALA n 1 209 MET n 1 210 MET n 1 211 LEU n 1 212 THR n 1 213 ARG n 1 214 GLU n 1 215 GLU n 1 216 VAL n 1 217 PRO n 1 218 THR n 1 219 SER n 1 220 ILE n 1 221 ALA n 1 222 VAL n 1 223 LYS n 1 224 ILE n 1 225 ASN n 1 226 GLU n 1 227 ILE n 1 228 LYS n 1 229 PRO n 1 230 GLY n 1 231 ASP n 1 232 ALA n 1 233 ASN n 1 234 PRO n 1 235 ASN n 1 236 MET n 1 237 LEU n 1 238 VAL n 1 239 ILE n 1 240 LYS n 1 241 GLY n 1 242 GLU n 1 243 ILE n 1 244 ILE n 1 245 VAL n 1 246 ASP n 1 247 ARG n 1 248 GLU n 1 249 ASN n 1 250 LEU n 1 251 LYS n 1 252 PRO n 1 253 ILE n 1 254 ILE n 1 255 ILE n 1 256 GLY n 1 257 LYS n 1 258 LYS n 1 259 GLY n 1 260 GLN n 1 261 ARG n 1 262 LEU n 1 263 LYS n 1 264 GLU n 1 265 ILE n 1 266 GLY n 1 267 LYS n 1 268 ARG n 1 269 ALA n 1 270 ARG n 1 271 GLN n 1 272 GLU n 1 273 LEU n 1 274 GLU n 1 275 LEU n 1 276 ILE n 1 277 LEU n 1 278 GLY n 1 279 ARG n 1 280 PRO n 1 281 VAL n 1 282 TYR n 1 283 LEU n 1 284 GLU n 1 285 LEU n 1 286 TRP n 1 287 VAL n 1 288 LYS n 1 289 VAL n 1 290 VAL n 1 291 PRO n 1 292 ASP n 1 293 TRP n 1 294 ARG n 1 295 ARG n 1 296 ARG n 1 297 PRO n 1 298 GLU n 1 299 TYR n 1 300 VAL n 1 301 ARG n 1 302 LEU n 1 303 PHE n 1 304 GLY n 1 305 TYR n 1 306 ALA n 1 307 LEU n 2 1 C n 2 2 A n 2 3 A n 2 4 C n 2 5 C n 2 6 G n 2 7 U n 2 8 A n 2 9 G n 2 10 G n 2 11 G n 2 12 G n 2 13 A n 2 14 A n 2 15 C n 2 16 C n 2 17 U n 2 18 G n 2 19 C n 2 20 G n 2 21 G n 2 22 U n 2 23 U n 2 24 G n 2 25 G n 2 26 A n 2 27 U n 2 28 C n 2 29 A n 2 30 C n 2 31 C n 2 32 U n 2 33 C n 2 34 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'aq_1994, era, era1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aquifex aeolicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 63363 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDONR201 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in Aquifex aeolicus except for U1506 that is replaced with C1506.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ERA_AQUAE O67800 1 ;MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGA NLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVD RENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYAL ; 1 ? 2 PDB 3R9W 3R9W 2 CAACCGUAGGGGAACCUGCGGUUGGAUCACCUCC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3R9W A 7 ? 307 ? O67800 1 ? 301 ? 1 301 2 2 3R9W B 1 ? 34 ? 3R9W 1506 ? 1539 ? 1506 1539 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3R9W HIS A 1 ? UNP O67800 ? ? 'expression tag' -5 1 1 3R9W HIS A 2 ? UNP O67800 ? ? 'expression tag' -4 2 1 3R9W HIS A 3 ? UNP O67800 ? ? 'expression tag' -3 3 1 3R9W HIS A 4 ? UNP O67800 ? ? 'expression tag' -2 4 1 3R9W HIS A 5 ? UNP O67800 ? ? 'expression tag' -1 5 1 3R9W HIS A 6 ? UNP O67800 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3R9W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '0.2M calcium acetate, 40% (v/v) MPD, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 292K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-10-29 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM # _reflns.entry_id 3R9W _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 30.000 _reflns.number_obs 27524 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 14.400 _reflns.pdbx_chi_squared 0.981 _reflns.pdbx_redundancy 5.500 _reflns.percent_possible_obs 93.700 _reflns.observed_criterion_sigma_F -6.0 _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 45.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.050 2.120 ? ? ? 0.665 2.18 ? 0.975 3.000 ? 2143 72.900 1 1 2.120 2.210 ? ? ? 0.545 1.43 ? 0.962 3.500 ? 2440 84.100 2 1 2.210 2.310 ? ? ? 0.430 2.56 ? 0.966 4.200 ? 2530 86.500 3 1 2.310 2.430 ? ? ? 0.333 4.10 ? 0.980 5.200 ? 2758 94.900 4 1 2.430 2.580 ? ? ? 0.284 5.74 ? 0.961 5.900 ? 2923 99.300 5 1 2.580 2.780 ? ? ? 0.205 8.71 ? 1.010 6.200 ? 2925 100.000 6 1 2.780 3.060 ? ? ? 0.123 14.18 ? 0.954 6.400 ? 2929 100.000 7 1 3.060 3.500 ? ? ? 0.094 18.06 ? 1.008 6.300 ? 2931 100.000 8 1 3.500 4.410 ? ? ? 0.075 19.73 ? 0.970 6.300 ? 2967 100.000 9 1 4.410 30.000 ? ? ? 0.054 25.62 ? 1.002 6.200 ? 2966 99.200 10 1 # _refine.entry_id 3R9W _refine.ls_d_res_high 2.0500 _refine.ls_d_res_low 25.9130 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 93.3500 _refine.ls_number_reflns_obs 27524 _refine.ls_number_reflns_all 27524 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1908 _refine.ls_R_factor_R_work 0.1881 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2427 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1404 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 62.1928 _refine.solvent_model_param_bsol 60.7380 _refine.solvent_model_param_ksol 0.3430 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4600 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3IEV _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 148.070 _refine.B_iso_min 30.160 _refine.occupancy_max 1.000 _refine.occupancy_min 0.180 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2395 _refine_hist.pdbx_number_atoms_nucleic_acid 724 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 3280 _refine_hist.d_res_high 2.0500 _refine_hist.d_res_low 25.9130 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 3351 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 4711 1.167 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 571 0.072 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 467 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1418 16.003 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.0500 2.1232 10 71.0000 2002 . 0.4729 0.5078 . 110 . 2112 2112 . 'X-RAY DIFFRACTION' 2.1232 2.2082 10 84.0000 2286 . 0.3981 0.4480 . 137 . 2423 2423 . 'X-RAY DIFFRACTION' 2.2082 2.3087 10 85.0000 2389 . 0.3294 0.3919 . 126 . 2515 2515 . 'X-RAY DIFFRACTION' 2.3087 2.4303 10 95.0000 2629 . 0.2998 0.3410 . 137 . 2766 2766 . 'X-RAY DIFFRACTION' 2.4303 2.5824 10 99.0000 2759 . 0.2715 0.3291 . 159 . 2918 2918 . 'X-RAY DIFFRACTION' 2.5824 2.7816 10 100.0000 2791 . 0.2505 0.3491 . 146 . 2937 2937 . 'X-RAY DIFFRACTION' 2.7816 3.0611 10 100.0000 2806 . 0.2279 0.3242 . 145 . 2951 2951 . 'X-RAY DIFFRACTION' 3.0611 3.5032 10 100.0000 2813 . 0.1929 0.2447 . 127 . 2940 2940 . 'X-RAY DIFFRACTION' 3.5032 4.4101 10 100.0000 2810 . 0.1480 0.1998 . 171 . 2981 2981 . 'X-RAY DIFFRACTION' 4.4101 25.9153 10 99.0000 2835 . 0.1434 0.1802 . 146 . 2981 2981 . 'X-RAY DIFFRACTION' # _struct.entry_id 3R9W _struct.title 'Crystal structure of Era in complex with MgGDPNP and nucleotides 1506-1542 of 16S ribosomal RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R9W _struct_keywords.text 'GTPase, KH domain, ribosome, biogenesis, GTP, 16S ribosomal RNA, GTP hydrolysis, HYDROLASE-RNA complex' _struct_keywords.pdbx_keywords HYDROLASE/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 7 ? L N N 5 ? M N N 8 ? N N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? GLY A 31 ? GLY A 15 GLY A 25 1 ? 11 HELX_P HELX_P2 2 ASP A 75 ? ALA A 92 ? ASP A 69 ALA A 86 1 ? 18 HELX_P HELX_P3 3 ARG A 106 ? ILE A 117 ? ARG A 100 ILE A 111 1 ? 12 HELX_P HELX_P4 4 LYS A 118 ? ASN A 121 ? LYS A 112 ASN A 115 5 ? 4 HELX_P HELX_P5 5 LYS A 130 ? ILE A 134 ? LYS A 124 ILE A 128 5 ? 5 HELX_P HELX_P6 6 PRO A 136 ? ASN A 139 ? PRO A 130 ASN A 133 5 ? 4 HELX_P HELX_P7 7 VAL A 140 ? HIS A 151 ? VAL A 134 HIS A 145 1 ? 12 HELX_P HELX_P8 8 ASN A 167 ? LEU A 179 ? ASN A 161 LEU A 173 1 ? 13 HELX_P HELX_P9 9 PRO A 195 ? LEU A 211 ? PRO A 189 LEU A 205 1 ? 17 HELX_P HELX_P10 10 GLU A 215 ? ILE A 220 ? GLU A 209 ILE A 214 1 ? 6 HELX_P HELX_P11 11 ASN A 249 ? GLY A 256 ? ASN A 243 GLY A 250 1 ? 8 HELX_P HELX_P12 12 GLY A 259 ? GLY A 278 ? GLY A 253 GLY A 272 1 ? 20 HELX_P HELX_P13 13 ASP A 292 ? ARG A 295 ? ASP A 286 ARG A 289 5 ? 4 HELX_P HELX_P14 14 ARG A 296 ? PHE A 303 ? ARG A 290 PHE A 297 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 23 OG ? ? ? 1_555 C MG . MG ? ? A SER 17 A MG 401 1_555 ? ? ? ? ? ? ? 2.224 ? ? metalc2 metalc ? ? A THR 44 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 38 A MG 401 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D GNP . O1G ? ? A MG 401 A GNP 402 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D GNP . O2B ? ? A MG 401 A GNP 402 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 401 A HOH 611 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 401 A HOH 632 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc7 metalc ? ? K CA . CA ? ? ? 1_555 B G 18 O6 ? ? B CA 501 B G 1523 1_555 ? ? ? ? ? ? ? 2.751 ? ? hydrog1 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 1506 B G 1529 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 1506 B G 1529 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 1506 B G 1529 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B A 2 N1 ? ? ? 1_555 B U 23 N3 ? ? B A 1507 B U 1528 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B A 2 N6 ? ? ? 1_555 B U 23 O4 ? ? B A 1507 B U 1528 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 22 N3 ? ? B A 1508 B U 1527 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 22 O4 ? ? B A 1508 B U 1527 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 21 N1 ? ? B C 1509 B G 1526 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 21 O6 ? ? B C 1509 B G 1526 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 21 N2 ? ? B C 1509 B G 1526 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 20 N1 ? ? B C 1510 B G 1525 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 20 O6 ? ? B C 1510 B G 1525 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 20 N2 ? ? B C 1510 B G 1525 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 19 N3 ? ? B G 1511 B C 1524 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 19 O2 ? ? B G 1511 B C 1524 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 19 N4 ? ? B G 1511 B C 1524 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B U 7 N3 ? ? ? 1_555 B G 18 O6 ? ? B U 1512 B G 1523 2_455 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? B U 7 O2 ? ? ? 1_555 B G 18 N1 ? ? B U 1512 B G 1523 2_455 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? B A 8 N1 ? ? ? 1_555 B U 17 N3 ? ? B A 1513 B U 1522 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 17 O4 ? ? B A 1513 B U 1522 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 1514 B C 1521 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 1514 B C 1521 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 1514 B C 1521 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? B G 1515 B C 1520 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? B G 1515 B C 1520 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 1515 B C 1520 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 11 N2 ? ? ? 1_555 B A 14 N7 ? ? B G 1516 B A 1519 2_455 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? B G 11 N3 ? ? ? 1_555 B A 14 N6 ? ? B G 1516 B A 1519 2_455 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? B G 12 N2 ? ? ? 1_555 B A 13 N7 ? ? B G 1517 B A 1518 2_455 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog30 hydrog ? ? B A 13 N7 ? ? ? 1_555 B G 12 N2 ? ? B A 1518 B G 1517 2_455 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog31 hydrog ? ? B A 14 N6 ? ? ? 1_555 B G 11 N3 ? ? B A 1519 B G 1516 2_455 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog32 hydrog ? ? B A 14 N7 ? ? ? 1_555 B G 11 N2 ? ? B A 1519 B G 1516 2_455 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog33 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? B C 1520 B G 1515 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? B C 1520 B G 1515 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? B C 1520 B G 1515 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 9 N1 ? ? B C 1521 B G 1514 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 9 O6 ? ? B C 1521 B G 1514 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 9 N2 ? ? B C 1521 B G 1514 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B U 17 N3 ? ? ? 1_555 B A 8 N1 ? ? B U 1522 B A 1513 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 17 O4 ? ? ? 1_555 B A 8 N6 ? ? B U 1522 B A 1513 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 18 N1 ? ? ? 1_555 B U 7 O2 ? ? B G 1523 B U 1512 2_455 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? B G 18 O6 ? ? ? 1_555 B U 7 N3 ? ? B G 1523 B U 1512 2_455 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog43 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 6 N1 ? ? B C 1524 B G 1511 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 6 O6 ? ? B C 1524 B G 1511 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 6 N2 ? ? B C 1524 B G 1511 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 20 N1 ? ? ? 1_555 B C 5 N3 ? ? B G 1525 B C 1510 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 20 N2 ? ? ? 1_555 B C 5 O2 ? ? B G 1525 B C 1510 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 20 O6 ? ? ? 1_555 B C 5 N4 ? ? B G 1525 B C 1510 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 21 N1 ? ? ? 1_555 B C 4 N3 ? ? B G 1526 B C 1509 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 21 N2 ? ? ? 1_555 B C 4 O2 ? ? B G 1526 B C 1509 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 4 N4 ? ? B G 1526 B C 1509 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 3 N1 ? ? B U 1527 B A 1508 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B U 22 O4 ? ? ? 1_555 B A 3 N6 ? ? B U 1527 B A 1508 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B U 23 N3 ? ? ? 1_555 B A 2 N1 ? ? B U 1528 B A 1507 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B U 23 O4 ? ? ? 1_555 B A 2 N6 ? ? B U 1528 B A 1507 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 1 N3 ? ? B G 1529 B C 1506 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 1 O2 ? ? B G 1529 B C 1506 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 1 N4 ? ? B G 1529 B C 1506 2_455 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 48 ? ILE A 54 ? VAL A 42 ILE A 48 A 2 ALA A 58 ? ASP A 64 ? ALA A 52 ASP A 58 A 3 LYS A 8 ? VAL A 15 ? LYS A 2 VAL A 9 A 4 VAL A 94 ? ASP A 100 ? VAL A 88 ASP A 94 A 5 VAL A 124 ? ASN A 129 ? VAL A 118 ASN A 123 A 6 ILE A 157 ? PRO A 159 ? ILE A 151 PRO A 153 B 1 ALA A 221 ? PRO A 229 ? ALA A 215 PRO A 223 B 2 LEU A 237 ? VAL A 245 ? LEU A 231 VAL A 239 B 3 VAL A 281 ? VAL A 289 ? VAL A 275 VAL A 283 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 52 ? N LYS A 46 O ILE A 60 ? O ILE A 54 A 2 3 O LEU A 63 ? O LEU A 57 N ILE A 14 ? N ILE A 8 A 3 4 N ALA A 13 ? N ALA A 7 O LEU A 96 ? O LEU A 90 A 4 5 N ILE A 95 ? N ILE A 89 O ILE A 125 ? O ILE A 119 A 5 6 N VAL A 126 ? N VAL A 120 O VAL A 158 ? O VAL A 152 B 1 2 N ALA A 221 ? N ALA A 215 O ILE A 244 ? O ILE A 238 B 2 3 N ILE A 239 ? N ILE A 233 O GLU A 284 ? O GLU A 278 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 401 ? 5 'BINDING SITE FOR RESIDUE MG A 401' AC2 Software A GNP 402 ? 28 'BINDING SITE FOR RESIDUE GNP A 402' AC3 Software A ACT 502 ? 3 'BINDING SITE FOR RESIDUE ACT A 502' AC4 Software A ACT 503 ? 5 'BINDING SITE FOR RESIDUE ACT A 503' AC5 Software A ACT 505 ? 1 'BINDING SITE FOR RESIDUE ACT A 505' AC6 Software A ACT 506 ? 1 'BINDING SITE FOR RESIDUE ACT A 506' AC7 Software A MRD 507 ? 1 'BINDING SITE FOR RESIDUE MRD A 507' AC8 Software A MRD 508 ? 3 'BINDING SITE FOR RESIDUE MRD A 508' AC9 Software B CA 501 ? 4 'BINDING SITE FOR RESIDUE CA B 501' BC1 Software B ACT 504 ? 2 'BINDING SITE FOR RESIDUE ACT B 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 23 ? SER A 17 . ? 1_555 ? 2 AC1 5 THR A 44 ? THR A 38 . ? 1_555 ? 3 AC1 5 GNP D . ? GNP A 402 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH A 611 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH A 632 . ? 1_555 ? 6 AC2 28 PRO A 18 ? PRO A 12 . ? 1_555 ? 7 AC2 28 ASN A 19 ? ASN A 13 . ? 1_555 ? 8 AC2 28 VAL A 20 ? VAL A 14 . ? 1_555 ? 9 AC2 28 GLY A 21 ? GLY A 15 . ? 1_555 ? 10 AC2 28 LYS A 22 ? LYS A 16 . ? 1_555 ? 11 AC2 28 SER A 23 ? SER A 17 . ? 1_555 ? 12 AC2 28 THR A 24 ? THR A 18 . ? 1_555 ? 13 AC2 28 ILE A 37 ? ILE A 31 . ? 1_555 ? 14 AC2 28 SER A 38 ? SER A 32 . ? 1_555 ? 15 AC2 28 PRO A 39 ? PRO A 33 . ? 1_555 ? 16 AC2 28 GLY A 42 ? GLY A 36 . ? 1_555 ? 17 AC2 28 THR A 43 ? THR A 37 . ? 1_555 ? 18 AC2 28 THR A 44 ? THR A 38 . ? 1_555 ? 19 AC2 28 GLY A 67 ? GLY A 61 . ? 1_555 ? 20 AC2 28 ASN A 129 ? ASN A 123 . ? 1_555 ? 21 AC2 28 LYS A 130 ? LYS A 124 . ? 1_555 ? 22 AC2 28 ASP A 132 ? ASP A 126 . ? 1_555 ? 23 AC2 28 SER A 161 ? SER A 155 . ? 1_555 ? 24 AC2 28 ALA A 162 ? ALA A 156 . ? 1_555 ? 25 AC2 28 LEU A 163 ? LEU A 157 . ? 1_555 ? 26 AC2 28 MG C . ? MG A 401 . ? 1_555 ? 27 AC2 28 HOH M . ? HOH A 606 . ? 1_555 ? 28 AC2 28 HOH M . ? HOH A 611 . ? 1_555 ? 29 AC2 28 HOH M . ? HOH A 617 . ? 1_555 ? 30 AC2 28 HOH M . ? HOH A 624 . ? 1_555 ? 31 AC2 28 HOH M . ? HOH A 625 . ? 1_555 ? 32 AC2 28 HOH M . ? HOH A 632 . ? 1_555 ? 33 AC2 28 HOH M . ? HOH A 671 . ? 1_555 ? 34 AC3 3 LYS A 251 ? LYS A 245 . ? 2_555 ? 35 AC3 3 TRP A 286 ? TRP A 280 . ? 1_555 ? 36 AC3 3 C B 28 ? C B 1533 . ? 2_555 ? 37 AC4 5 GLU A 214 ? GLU A 208 . ? 1_555 ? 38 AC4 5 C B 1 ? C B 1506 . ? 2_455 ? 39 AC4 5 A B 2 ? A B 1507 . ? 2_455 ? 40 AC4 5 G B 25 ? G B 1530 . ? 1_555 ? 41 AC4 5 A B 26 ? A B 1531 . ? 1_555 ? 42 AC5 1 ALA A 101 ? ALA A 95 . ? 1_555 ? 43 AC6 1 GLU A 70 ? GLU A 64 . ? 1_555 ? 44 AC7 1 ARG A 301 ? ARG A 295 . ? 1_555 ? 45 AC8 3 HIS A 148 ? HIS A 142 . ? 1_555 ? 46 AC8 3 THR A 155 ? THR A 149 . ? 1_555 ? 47 AC8 3 G B 11 ? G B 1516 . ? 1_554 ? 48 AC9 4 G B 6 ? G B 1511 . ? 2_455 ? 49 AC9 4 U B 7 ? U B 1512 . ? 2_455 ? 50 AC9 4 U B 17 ? U B 1522 . ? 1_555 ? 51 AC9 4 G B 18 ? G B 1523 . ? 1_555 ? 52 BC1 2 A B 26 ? A B 1531 . ? 1_555 ? 53 BC1 2 U B 27 ? U B 1532 . ? 1_555 ? # _atom_sites.entry_id 3R9W _atom_sites.fract_transf_matrix[1][1] 0.011243 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004361 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011682 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015965 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -5 ? ? ? A . n A 1 2 HIS 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 HIS 4 -2 ? ? ? A . n A 1 5 HIS 5 -1 ? ? ? A . n A 1 6 HIS 6 0 0 HIS HIS A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 LYS 8 2 2 LYS LYS A . n A 1 9 VAL 9 3 3 VAL VAL A . n A 1 10 GLY 10 4 4 GLY GLY A . n A 1 11 TYR 11 5 5 TYR TYR A . n A 1 12 VAL 12 6 6 VAL VAL A . n A 1 13 ALA 13 7 7 ALA ALA A . n A 1 14 ILE 14 8 8 ILE ILE A . n A 1 15 VAL 15 9 9 VAL VAL A . n A 1 16 GLY 16 10 10 GLY GLY A . n A 1 17 LYS 17 11 11 LYS LYS A . n A 1 18 PRO 18 12 12 PRO PRO A . n A 1 19 ASN 19 13 13 ASN ASN A . n A 1 20 VAL 20 14 14 VAL VAL A . n A 1 21 GLY 21 15 15 GLY GLY A . n A 1 22 LYS 22 16 16 LYS LYS A . n A 1 23 SER 23 17 17 SER SER A . n A 1 24 THR 24 18 18 THR THR A . n A 1 25 LEU 25 19 19 LEU LEU A . n A 1 26 LEU 26 20 20 LEU LEU A . n A 1 27 ASN 27 21 21 ASN ASN A . n A 1 28 ASN 28 22 22 ASN ASN A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 LEU 30 24 24 LEU LEU A . n A 1 31 GLY 31 25 25 GLY GLY A . n A 1 32 THR 32 26 26 THR THR A . n A 1 33 LYS 33 27 27 LYS LYS A . n A 1 34 VAL 34 28 28 VAL VAL A . n A 1 35 SER 35 29 29 SER SER A . n A 1 36 ILE 36 30 30 ILE ILE A . n A 1 37 ILE 37 31 31 ILE ILE A . n A 1 38 SER 38 32 32 SER SER A . n A 1 39 PRO 39 33 33 PRO PRO A . n A 1 40 LYS 40 34 34 LYS LYS A . n A 1 41 ALA 41 35 35 ALA ALA A . n A 1 42 GLY 42 36 36 GLY GLY A . n A 1 43 THR 43 37 37 THR THR A . n A 1 44 THR 44 38 38 THR THR A . n A 1 45 ARG 45 39 39 ARG ARG A . n A 1 46 MET 46 40 40 MET MET A . n A 1 47 ARG 47 41 41 ARG ARG A . n A 1 48 VAL 48 42 42 VAL VAL A . n A 1 49 LEU 49 43 43 LEU LEU A . n A 1 50 GLY 50 44 44 GLY GLY A . n A 1 51 VAL 51 45 45 VAL VAL A . n A 1 52 LYS 52 46 46 LYS LYS A . n A 1 53 ASN 53 47 47 ASN ASN A . n A 1 54 ILE 54 48 48 ILE ILE A . n A 1 55 PRO 55 49 49 PRO PRO A . n A 1 56 ASN 56 50 50 ASN ASN A . n A 1 57 GLU 57 51 51 GLU GLU A . n A 1 58 ALA 58 52 52 ALA ALA A . n A 1 59 GLN 59 53 53 GLN GLN A . n A 1 60 ILE 60 54 54 ILE ILE A . n A 1 61 ILE 61 55 55 ILE ILE A . n A 1 62 PHE 62 56 56 PHE PHE A . n A 1 63 LEU 63 57 57 LEU LEU A . n A 1 64 ASP 64 58 58 ASP ASP A . n A 1 65 THR 65 59 59 THR THR A . n A 1 66 PRO 66 60 60 PRO PRO A . n A 1 67 GLY 67 61 61 GLY GLY A . n A 1 68 ILE 68 62 62 ILE ILE A . n A 1 69 TYR 69 63 63 TYR TYR A . n A 1 70 GLU 70 64 64 GLU GLU A . n A 1 71 PRO 71 65 65 PRO PRO A . n A 1 72 LYS 72 66 66 LYS LYS A . n A 1 73 LYS 73 67 67 LYS LYS A . n A 1 74 SER 74 68 68 SER SER A . n A 1 75 ASP 75 69 69 ASP ASP A . n A 1 76 VAL 76 70 70 VAL VAL A . n A 1 77 LEU 77 71 71 LEU LEU A . n A 1 78 GLY 78 72 72 GLY GLY A . n A 1 79 HIS 79 73 73 HIS HIS A . n A 1 80 SER 80 74 74 SER SER A . n A 1 81 MET 81 75 75 MET MET A . n A 1 82 VAL 82 76 76 VAL VAL A . n A 1 83 GLU 83 77 77 GLU GLU A . n A 1 84 ILE 84 78 78 ILE ILE A . n A 1 85 ALA 85 79 79 ALA ALA A . n A 1 86 LYS 86 80 80 LYS LYS A . n A 1 87 GLN 87 81 81 GLN GLN A . n A 1 88 SER 88 82 82 SER SER A . n A 1 89 LEU 89 83 83 LEU LEU A . n A 1 90 GLU 90 84 84 GLU GLU A . n A 1 91 GLU 91 85 85 GLU GLU A . n A 1 92 ALA 92 86 86 ALA ALA A . n A 1 93 ASP 93 87 87 ASP ASP A . n A 1 94 VAL 94 88 88 VAL VAL A . n A 1 95 ILE 95 89 89 ILE ILE A . n A 1 96 LEU 96 90 90 LEU LEU A . n A 1 97 PHE 97 91 91 PHE PHE A . n A 1 98 MET 98 92 92 MET MET A . n A 1 99 ILE 99 93 93 ILE ILE A . n A 1 100 ASP 100 94 94 ASP ASP A . n A 1 101 ALA 101 95 95 ALA ALA A . n A 1 102 THR 102 96 96 THR THR A . n A 1 103 GLU 103 97 97 GLU GLU A . n A 1 104 GLY 104 98 98 GLY GLY A . n A 1 105 TRP 105 99 99 TRP TRP A . n A 1 106 ARG 106 100 100 ARG ARG A . n A 1 107 PRO 107 101 101 PRO PRO A . n A 1 108 ARG 108 102 102 ARG ARG A . n A 1 109 ASP 109 103 103 ASP ASP A . n A 1 110 GLU 110 104 104 GLU GLU A . n A 1 111 GLU 111 105 105 GLU GLU A . n A 1 112 ILE 112 106 106 ILE ILE A . n A 1 113 TYR 113 107 107 TYR TYR A . n A 1 114 GLN 114 108 108 GLN GLN A . n A 1 115 ASN 115 109 109 ASN ASN A . n A 1 116 PHE 116 110 110 PHE PHE A . n A 1 117 ILE 117 111 111 ILE ILE A . n A 1 118 LYS 118 112 112 LYS LYS A . n A 1 119 PRO 119 113 113 PRO PRO A . n A 1 120 LEU 120 114 114 LEU LEU A . n A 1 121 ASN 121 115 115 ASN ASN A . n A 1 122 LYS 122 116 116 LYS LYS A . n A 1 123 PRO 123 117 117 PRO PRO A . n A 1 124 VAL 124 118 118 VAL VAL A . n A 1 125 ILE 125 119 119 ILE ILE A . n A 1 126 VAL 126 120 120 VAL VAL A . n A 1 127 VAL 127 121 121 VAL VAL A . n A 1 128 ILE 128 122 122 ILE ILE A . n A 1 129 ASN 129 123 123 ASN ASN A . n A 1 130 LYS 130 124 124 LYS LYS A . n A 1 131 ILE 131 125 125 ILE ILE A . n A 1 132 ASP 132 126 126 ASP ASP A . n A 1 133 LYS 133 127 127 LYS LYS A . n A 1 134 ILE 134 128 128 ILE ILE A . n A 1 135 GLY 135 129 129 GLY GLY A . n A 1 136 PRO 136 130 130 PRO PRO A . n A 1 137 ALA 137 131 131 ALA ALA A . n A 1 138 LYS 138 132 132 LYS LYS A . n A 1 139 ASN 139 133 133 ASN ASN A . n A 1 140 VAL 140 134 134 VAL VAL A . n A 1 141 LEU 141 135 135 LEU LEU A . n A 1 142 PRO 142 136 136 PRO PRO A . n A 1 143 LEU 143 137 137 LEU LEU A . n A 1 144 ILE 144 138 138 ILE ILE A . n A 1 145 ASP 145 139 139 ASP ASP A . n A 1 146 GLU 146 140 140 GLU GLU A . n A 1 147 ILE 147 141 141 ILE ILE A . n A 1 148 HIS 148 142 142 HIS HIS A . n A 1 149 LYS 149 143 143 LYS LYS A . n A 1 150 LYS 150 144 144 LYS LYS A . n A 1 151 HIS 151 145 145 HIS HIS A . n A 1 152 PRO 152 146 146 PRO PRO A . n A 1 153 GLU 153 147 147 GLU GLU A . n A 1 154 LEU 154 148 148 LEU LEU A . n A 1 155 THR 155 149 149 THR THR A . n A 1 156 GLU 156 150 150 GLU GLU A . n A 1 157 ILE 157 151 151 ILE ILE A . n A 1 158 VAL 158 152 152 VAL VAL A . n A 1 159 PRO 159 153 153 PRO PRO A . n A 1 160 ILE 160 154 154 ILE ILE A . n A 1 161 SER 161 155 155 SER SER A . n A 1 162 ALA 162 156 156 ALA ALA A . n A 1 163 LEU 163 157 157 LEU LEU A . n A 1 164 LYS 164 158 158 LYS LYS A . n A 1 165 GLY 165 159 159 GLY GLY A . n A 1 166 ALA 166 160 160 ALA ALA A . n A 1 167 ASN 167 161 161 ASN ASN A . n A 1 168 LEU 168 162 162 LEU LEU A . n A 1 169 ASP 169 163 163 ASP ASP A . n A 1 170 GLU 170 164 164 GLU GLU A . n A 1 171 LEU 171 165 165 LEU LEU A . n A 1 172 VAL 172 166 166 VAL VAL A . n A 1 173 LYS 173 167 167 LYS LYS A . n A 1 174 THR 174 168 168 THR THR A . n A 1 175 ILE 175 169 169 ILE ILE A . n A 1 176 LEU 176 170 170 LEU LEU A . n A 1 177 LYS 177 171 171 LYS LYS A . n A 1 178 TYR 178 172 172 TYR TYR A . n A 1 179 LEU 179 173 173 LEU LEU A . n A 1 180 PRO 180 174 174 PRO PRO A . n A 1 181 GLU 181 175 175 GLU GLU A . n A 1 182 GLY 182 176 176 GLY GLY A . n A 1 183 GLU 183 177 177 GLU GLU A . n A 1 184 PRO 184 178 178 PRO PRO A . n A 1 185 LEU 185 179 179 LEU LEU A . n A 1 186 PHE 186 180 180 PHE PHE A . n A 1 187 PRO 187 181 181 PRO PRO A . n A 1 188 GLU 188 182 182 GLU GLU A . n A 1 189 ASP 189 183 183 ASP ASP A . n A 1 190 MET 190 184 184 MET MET A . n A 1 191 ILE 191 185 185 ILE ILE A . n A 1 192 THR 192 186 186 THR THR A . n A 1 193 ASP 193 187 187 ASP ASP A . n A 1 194 LEU 194 188 188 LEU LEU A . n A 1 195 PRO 195 189 189 PRO PRO A . n A 1 196 LEU 196 190 190 LEU LEU A . n A 1 197 ARG 197 191 191 ARG ARG A . n A 1 198 LEU 198 192 192 LEU LEU A . n A 1 199 LEU 199 193 193 LEU LEU A . n A 1 200 ALA 200 194 194 ALA ALA A . n A 1 201 ALA 201 195 195 ALA ALA A . n A 1 202 GLU 202 196 196 GLU GLU A . n A 1 203 ILE 203 197 197 ILE ILE A . n A 1 204 VAL 204 198 198 VAL VAL A . n A 1 205 ARG 205 199 199 ARG ARG A . n A 1 206 GLU 206 200 200 GLU GLU A . n A 1 207 LYS 207 201 201 LYS LYS A . n A 1 208 ALA 208 202 202 ALA ALA A . n A 1 209 MET 209 203 203 MET MET A . n A 1 210 MET 210 204 204 MET MET A . n A 1 211 LEU 211 205 205 LEU LEU A . n A 1 212 THR 212 206 206 THR THR A . n A 1 213 ARG 213 207 207 ARG ARG A . n A 1 214 GLU 214 208 208 GLU GLU A . n A 1 215 GLU 215 209 209 GLU GLU A . n A 1 216 VAL 216 210 210 VAL VAL A . n A 1 217 PRO 217 211 211 PRO PRO A . n A 1 218 THR 218 212 212 THR THR A . n A 1 219 SER 219 213 213 SER SER A . n A 1 220 ILE 220 214 214 ILE ILE A . n A 1 221 ALA 221 215 215 ALA ALA A . n A 1 222 VAL 222 216 216 VAL VAL A . n A 1 223 LYS 223 217 217 LYS LYS A . n A 1 224 ILE 224 218 218 ILE ILE A . n A 1 225 ASN 225 219 219 ASN ASN A . n A 1 226 GLU 226 220 220 GLU GLU A . n A 1 227 ILE 227 221 221 ILE ILE A . n A 1 228 LYS 228 222 222 LYS LYS A . n A 1 229 PRO 229 223 223 PRO PRO A . n A 1 230 GLY 230 224 224 GLY GLY A . n A 1 231 ASP 231 225 225 ASP ASP A . n A 1 232 ALA 232 226 226 ALA ALA A . n A 1 233 ASN 233 227 227 ASN ASN A . n A 1 234 PRO 234 228 228 PRO PRO A . n A 1 235 ASN 235 229 229 ASN ASN A . n A 1 236 MET 236 230 230 MET MET A . n A 1 237 LEU 237 231 231 LEU LEU A . n A 1 238 VAL 238 232 232 VAL VAL A . n A 1 239 ILE 239 233 233 ILE ILE A . n A 1 240 LYS 240 234 234 LYS LYS A . n A 1 241 GLY 241 235 235 GLY GLY A . n A 1 242 GLU 242 236 236 GLU GLU A . n A 1 243 ILE 243 237 237 ILE ILE A . n A 1 244 ILE 244 238 238 ILE ILE A . n A 1 245 VAL 245 239 239 VAL VAL A . n A 1 246 ASP 246 240 240 ASP ASP A . n A 1 247 ARG 247 241 241 ARG ARG A . n A 1 248 GLU 248 242 242 GLU GLU A . n A 1 249 ASN 249 243 243 ASN ASN A . n A 1 250 LEU 250 244 244 LEU LEU A . n A 1 251 LYS 251 245 245 LYS LYS A . n A 1 252 PRO 252 246 246 PRO PRO A . n A 1 253 ILE 253 247 247 ILE ILE A . n A 1 254 ILE 254 248 248 ILE ILE A . n A 1 255 ILE 255 249 249 ILE ILE A . n A 1 256 GLY 256 250 250 GLY GLY A . n A 1 257 LYS 257 251 251 LYS LYS A . n A 1 258 LYS 258 252 252 LYS LYS A . n A 1 259 GLY 259 253 253 GLY GLY A . n A 1 260 GLN 260 254 254 GLN GLN A . n A 1 261 ARG 261 255 255 ARG ARG A . n A 1 262 LEU 262 256 256 LEU LEU A . n A 1 263 LYS 263 257 257 LYS LYS A . n A 1 264 GLU 264 258 258 GLU GLU A . n A 1 265 ILE 265 259 259 ILE ILE A . n A 1 266 GLY 266 260 260 GLY GLY A . n A 1 267 LYS 267 261 261 LYS LYS A . n A 1 268 ARG 268 262 262 ARG ARG A . n A 1 269 ALA 269 263 263 ALA ALA A . n A 1 270 ARG 270 264 264 ARG ARG A . n A 1 271 GLN 271 265 265 GLN GLN A . n A 1 272 GLU 272 266 266 GLU GLU A . n A 1 273 LEU 273 267 267 LEU LEU A . n A 1 274 GLU 274 268 268 GLU GLU A . n A 1 275 LEU 275 269 269 LEU LEU A . n A 1 276 ILE 276 270 270 ILE ILE A . n A 1 277 LEU 277 271 271 LEU LEU A . n A 1 278 GLY 278 272 272 GLY GLY A . n A 1 279 ARG 279 273 273 ARG ARG A . n A 1 280 PRO 280 274 274 PRO PRO A . n A 1 281 VAL 281 275 275 VAL VAL A . n A 1 282 TYR 282 276 276 TYR TYR A . n A 1 283 LEU 283 277 277 LEU LEU A . n A 1 284 GLU 284 278 278 GLU GLU A . n A 1 285 LEU 285 279 279 LEU LEU A . n A 1 286 TRP 286 280 280 TRP TRP A . n A 1 287 VAL 287 281 281 VAL VAL A . n A 1 288 LYS 288 282 282 LYS LYS A . n A 1 289 VAL 289 283 283 VAL VAL A . n A 1 290 VAL 290 284 284 VAL VAL A . n A 1 291 PRO 291 285 285 PRO PRO A . n A 1 292 ASP 292 286 286 ASP ASP A . n A 1 293 TRP 293 287 287 TRP TRP A . n A 1 294 ARG 294 288 288 ARG ARG A . n A 1 295 ARG 295 289 289 ARG ARG A . n A 1 296 ARG 296 290 290 ARG ARG A . n A 1 297 PRO 297 291 291 PRO PRO A . n A 1 298 GLU 298 292 292 GLU GLU A . n A 1 299 TYR 299 293 293 TYR TYR A . n A 1 300 VAL 300 294 294 VAL VAL A . n A 1 301 ARG 301 295 295 ARG ARG A . n A 1 302 LEU 302 296 296 LEU LEU A . n A 1 303 PHE 303 297 297 PHE PHE A . n A 1 304 GLY 304 298 298 GLY GLY A . n A 1 305 TYR 305 299 299 TYR TYR A . n A 1 306 ALA 306 300 300 ALA ALA A . n A 1 307 LEU 307 301 301 LEU LEU A . n B 2 1 C 1 1506 1506 C C B . n B 2 2 A 2 1507 1507 A A B . n B 2 3 A 3 1508 1508 A A B . n B 2 4 C 4 1509 1509 C C B . n B 2 5 C 5 1510 1510 C C B . n B 2 6 G 6 1511 1511 G G B . n B 2 7 U 7 1512 1512 U U B . n B 2 8 A 8 1513 1513 A A B . n B 2 9 G 9 1514 1514 G G B . n B 2 10 G 10 1515 1515 G G B . n B 2 11 G 11 1516 1516 G G B . n B 2 12 G 12 1517 1517 G G B . n B 2 13 A 13 1518 1518 A A B . n B 2 14 A 14 1519 1519 A A B . n B 2 15 C 15 1520 1520 C C B . n B 2 16 C 16 1521 1521 C C B . n B 2 17 U 17 1522 1522 U U B . n B 2 18 G 18 1523 1523 G G B . n B 2 19 C 19 1524 1524 C C B . n B 2 20 G 20 1525 1525 G G B . n B 2 21 G 21 1526 1526 G G B . n B 2 22 U 22 1527 1527 U U B . n B 2 23 U 23 1528 1528 U U B . n B 2 24 G 24 1529 1529 G G B . n B 2 25 G 25 1530 1530 G G B . n B 2 26 A 26 1531 1531 A A B . n B 2 27 U 27 1532 1532 U U B . n B 2 28 C 28 1533 1533 C C B . n B 2 29 A 29 1534 1534 A A B . n B 2 30 C 30 1535 1535 C C B . n B 2 31 C 31 1536 1536 C C B . n B 2 32 U 32 1537 1537 U U B . n B 2 33 C 33 1538 1538 C C B . n B 2 34 C 34 1539 1539 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 401 401 MG MG A . D 4 GNP 1 402 402 GNP GNP A . E 5 ACT 1 502 502 ACT ACT A . F 5 ACT 1 503 503 ACT ACT A . G 5 ACT 1 505 505 ACT ACT A . H 5 ACT 1 506 506 ACT ACT A . I 6 MRD 1 507 507 MRD MRD A . J 6 MRD 1 508 508 MRD MRD A . K 7 CA 1 501 501 CA CA B . L 5 ACT 1 504 504 ACT ACT B . M 8 HOH 1 601 601 HOH HOH A . M 8 HOH 2 602 602 HOH HOH A . M 8 HOH 3 604 604 HOH HOH A . M 8 HOH 4 605 605 HOH HOH A . M 8 HOH 5 606 606 HOH HOH A . M 8 HOH 6 607 607 HOH HOH A . M 8 HOH 7 608 608 HOH HOH A . M 8 HOH 8 609 609 HOH HOH A . M 8 HOH 9 611 611 HOH HOH A . M 8 HOH 10 614 614 HOH HOH A . M 8 HOH 11 615 615 HOH HOH A . M 8 HOH 12 616 616 HOH HOH A . M 8 HOH 13 617 617 HOH HOH A . M 8 HOH 14 618 618 HOH HOH A . M 8 HOH 15 619 619 HOH HOH A . M 8 HOH 16 620 620 HOH HOH A . M 8 HOH 17 621 621 HOH HOH A . M 8 HOH 18 622 622 HOH HOH A . M 8 HOH 19 623 623 HOH HOH A . M 8 HOH 20 624 624 HOH HOH A . M 8 HOH 21 625 625 HOH HOH A . M 8 HOH 22 626 626 HOH HOH A . M 8 HOH 23 627 627 HOH HOH A . M 8 HOH 24 628 628 HOH HOH A . M 8 HOH 25 629 629 HOH HOH A . M 8 HOH 26 630 630 HOH HOH A . M 8 HOH 27 631 631 HOH HOH A . M 8 HOH 28 632 632 HOH HOH A . M 8 HOH 29 633 633 HOH HOH A . M 8 HOH 30 634 634 HOH HOH A . M 8 HOH 31 635 635 HOH HOH A . M 8 HOH 32 636 636 HOH HOH A . M 8 HOH 33 637 637 HOH HOH A . M 8 HOH 34 638 638 HOH HOH A . M 8 HOH 35 639 639 HOH HOH A . M 8 HOH 36 640 640 HOH HOH A . M 8 HOH 37 641 641 HOH HOH A . M 8 HOH 38 642 642 HOH HOH A . M 8 HOH 39 645 645 HOH HOH A . M 8 HOH 40 646 646 HOH HOH A . M 8 HOH 41 647 647 HOH HOH A . M 8 HOH 42 648 648 HOH HOH A . M 8 HOH 43 649 649 HOH HOH A . M 8 HOH 44 651 651 HOH HOH A . M 8 HOH 45 652 652 HOH HOH A . M 8 HOH 46 653 653 HOH HOH A . M 8 HOH 47 654 654 HOH HOH A . M 8 HOH 48 656 656 HOH HOH A . M 8 HOH 49 657 657 HOH HOH A . M 8 HOH 50 658 658 HOH HOH A . M 8 HOH 51 659 659 HOH HOH A . M 8 HOH 52 660 660 HOH HOH A . M 8 HOH 53 661 661 HOH HOH A . M 8 HOH 54 662 662 HOH HOH A . M 8 HOH 55 663 663 HOH HOH A . M 8 HOH 56 664 664 HOH HOH A . M 8 HOH 57 666 666 HOH HOH A . M 8 HOH 58 667 667 HOH HOH A . M 8 HOH 59 669 669 HOH HOH A . M 8 HOH 60 670 670 HOH HOH A . M 8 HOH 61 671 671 HOH HOH A . M 8 HOH 62 672 672 HOH HOH A . M 8 HOH 63 674 674 HOH HOH A . M 8 HOH 64 675 675 HOH HOH A . M 8 HOH 65 677 677 HOH HOH A . M 8 HOH 66 678 678 HOH HOH A . M 8 HOH 67 679 679 HOH HOH A . M 8 HOH 68 682 682 HOH HOH A . M 8 HOH 69 684 684 HOH HOH A . M 8 HOH 70 685 685 HOH HOH A . M 8 HOH 71 686 686 HOH HOH A . M 8 HOH 72 687 687 HOH HOH A . M 8 HOH 73 688 688 HOH HOH A . M 8 HOH 74 689 689 HOH HOH A . M 8 HOH 75 690 690 HOH HOH A . M 8 HOH 76 691 691 HOH HOH A . N 8 HOH 1 603 603 HOH HOH B . N 8 HOH 2 610 610 HOH HOH B . N 8 HOH 3 612 612 HOH HOH B . N 8 HOH 4 613 613 HOH HOH B . N 8 HOH 5 643 643 HOH HOH B . N 8 HOH 6 644 644 HOH HOH B . N 8 HOH 7 650 650 HOH HOH B . N 8 HOH 8 655 655 HOH HOH B . N 8 HOH 9 665 665 HOH HOH B . N 8 HOH 10 668 668 HOH HOH B . N 8 HOH 11 673 673 HOH HOH B . N 8 HOH 12 676 676 HOH HOH B . N 8 HOH 13 680 680 HOH HOH B . N 8 HOH 14 681 681 HOH HOH B . N 8 HOH 15 683 683 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5080 ? 1 MORE -52 ? 1 'SSA (A^2)' 19720 ? 2 'ABSA (A^2)' 14060 ? 2 MORE -122 ? 2 'SSA (A^2)' 35540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1.0000000000 0.0000000000 0.0000000000 -88.9460000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 OG1 ? A THR 44 ? A THR 38 ? 1_555 81.1 ? 2 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O1G ? D GNP . ? A GNP 402 ? 1_555 169.3 ? 3 OG1 ? A THR 44 ? A THR 38 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O1G ? D GNP . ? A GNP 402 ? 1_555 88.3 ? 4 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O2B ? D GNP . ? A GNP 402 ? 1_555 96.5 ? 5 OG1 ? A THR 44 ? A THR 38 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O2B ? D GNP . ? A GNP 402 ? 1_555 176.3 ? 6 O1G ? D GNP . ? A GNP 402 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O2B ? D GNP . ? A GNP 402 ? 1_555 94.2 ? 7 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 611 ? 1_555 89.9 ? 8 OG1 ? A THR 44 ? A THR 38 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 611 ? 1_555 85.5 ? 9 O1G ? D GNP . ? A GNP 402 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 611 ? 1_555 90.4 ? 10 O2B ? D GNP . ? A GNP 402 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 611 ? 1_555 91.7 ? 11 OG ? A SER 23 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 632 ? 1_555 91.6 ? 12 OG1 ? A THR 44 ? A THR 38 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 632 ? 1_555 95.1 ? 13 O1G ? D GNP . ? A GNP 402 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 632 ? 1_555 88.1 ? 14 O2B ? D GNP . ? A GNP 402 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 632 ? 1_555 87.8 ? 15 O ? M HOH . ? A HOH 611 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? M HOH . ? A HOH 632 ? 1_555 178.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' citation_author 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref_seq_dif 9 3 'Structure model' struct_site 10 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 3 'Structure model' '_struct_ref_seq_dif.details' 32 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX 1.6.4_486 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N1 _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 1536 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C2 _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 1536 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 O2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 1536 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 114.71 _pdbx_validate_rmsd_angle.angle_target_value 118.90 _pdbx_validate_rmsd_angle.angle_deviation -4.19 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 13 ? ? 82.07 8.07 2 1 GLU A 51 ? ? -138.99 -50.91 3 1 GLU A 208 ? ? 58.26 -125.14 4 1 LYS A 252 ? ? 46.81 26.05 5 1 TYR A 299 ? ? -90.15 42.98 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -5 ? A HIS 1 2 1 Y 1 A HIS -4 ? A HIS 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A HIS -2 ? A HIS 4 5 1 Y 1 A HIS -1 ? A HIS 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 ALA N N N N 45 ALA CA C N S 46 ALA C C N N 47 ALA O O N N 48 ALA CB C N N 49 ALA OXT O N N 50 ALA H H N N 51 ALA H2 H N N 52 ALA HA H N N 53 ALA HB1 H N N 54 ALA HB2 H N N 55 ALA HB3 H N N 56 ALA HXT H N N 57 ARG N N N N 58 ARG CA C N S 59 ARG C C N N 60 ARG O O N N 61 ARG CB C N N 62 ARG CG C N N 63 ARG CD C N N 64 ARG NE N N N 65 ARG CZ C N N 66 ARG NH1 N N N 67 ARG NH2 N N N 68 ARG OXT O N N 69 ARG H H N N 70 ARG H2 H N N 71 ARG HA H N N 72 ARG HB2 H N N 73 ARG HB3 H N N 74 ARG HG2 H N N 75 ARG HG3 H N N 76 ARG HD2 H N N 77 ARG HD3 H N N 78 ARG HE H N N 79 ARG HH11 H N N 80 ARG HH12 H N N 81 ARG HH21 H N N 82 ARG HH22 H N N 83 ARG HXT H N N 84 ASN N N N N 85 ASN CA C N S 86 ASN C C N N 87 ASN O O N N 88 ASN CB C N N 89 ASN CG C N N 90 ASN OD1 O N N 91 ASN ND2 N N N 92 ASN OXT O N N 93 ASN H H N N 94 ASN H2 H N N 95 ASN HA H N N 96 ASN HB2 H N N 97 ASN HB3 H N N 98 ASN HD21 H N N 99 ASN HD22 H N N 100 ASN HXT H N N 101 ASP N N N N 102 ASP CA C N S 103 ASP C C N N 104 ASP O O N N 105 ASP CB C N N 106 ASP CG C N N 107 ASP OD1 O N N 108 ASP OD2 O N N 109 ASP OXT O N N 110 ASP H H N N 111 ASP H2 H N N 112 ASP HA H N N 113 ASP HB2 H N N 114 ASP HB3 H N N 115 ASP HD2 H N N 116 ASP HXT H N N 117 C OP3 O N N 118 C P P N N 119 C OP1 O N N 120 C OP2 O N N 121 C "O5'" O N N 122 C "C5'" C N N 123 C "C4'" C N R 124 C "O4'" O N N 125 C "C3'" C N S 126 C "O3'" O N N 127 C "C2'" C N R 128 C "O2'" O N N 129 C "C1'" C N R 130 C N1 N N N 131 C C2 C N N 132 C O2 O N N 133 C N3 N N N 134 C C4 C N N 135 C N4 N N N 136 C C5 C N N 137 C C6 C N N 138 C HOP3 H N N 139 C HOP2 H N N 140 C "H5'" H N N 141 C "H5''" H N N 142 C "H4'" H N N 143 C "H3'" H N N 144 C "HO3'" H N N 145 C "H2'" H N N 146 C "HO2'" H N N 147 C "H1'" H N N 148 C H41 H N N 149 C H42 H N N 150 C H5 H N N 151 C H6 H N N 152 CA CA CA N N 153 G OP3 O N N 154 G P P N N 155 G OP1 O N N 156 G OP2 O N N 157 G "O5'" O N N 158 G "C5'" C N N 159 G "C4'" C N R 160 G "O4'" O N N 161 G "C3'" C N S 162 G "O3'" O N N 163 G "C2'" C N R 164 G "O2'" O N N 165 G "C1'" C N R 166 G N9 N Y N 167 G C8 C Y N 168 G N7 N Y N 169 G C5 C Y N 170 G C6 C N N 171 G O6 O N N 172 G N1 N N N 173 G C2 C N N 174 G N2 N N N 175 G N3 N N N 176 G C4 C Y N 177 G HOP3 H N N 178 G HOP2 H N N 179 G "H5'" H N N 180 G "H5''" H N N 181 G "H4'" H N N 182 G "H3'" H N N 183 G "HO3'" H N N 184 G "H2'" H N N 185 G "HO2'" H N N 186 G "H1'" H N N 187 G H8 H N N 188 G H1 H N N 189 G H21 H N N 190 G H22 H N N 191 GLN N N N N 192 GLN CA C N S 193 GLN C C N N 194 GLN O O N N 195 GLN CB C N N 196 GLN CG C N N 197 GLN CD C N N 198 GLN OE1 O N N 199 GLN NE2 N N N 200 GLN OXT O N N 201 GLN H H N N 202 GLN H2 H N N 203 GLN HA H N N 204 GLN HB2 H N N 205 GLN HB3 H N N 206 GLN HG2 H N N 207 GLN HG3 H N N 208 GLN HE21 H N N 209 GLN HE22 H N N 210 GLN HXT H N N 211 GLU N N N N 212 GLU CA C N S 213 GLU C C N N 214 GLU O O N N 215 GLU CB C N N 216 GLU CG C N N 217 GLU CD C N N 218 GLU OE1 O N N 219 GLU OE2 O N N 220 GLU OXT O N N 221 GLU H H N N 222 GLU H2 H N N 223 GLU HA H N N 224 GLU HB2 H N N 225 GLU HB3 H N N 226 GLU HG2 H N N 227 GLU HG3 H N N 228 GLU HE2 H N N 229 GLU HXT H N N 230 GLY N N N N 231 GLY CA C N N 232 GLY C C N N 233 GLY O O N N 234 GLY OXT O N N 235 GLY H H N N 236 GLY H2 H N N 237 GLY HA2 H N N 238 GLY HA3 H N N 239 GLY HXT H N N 240 GNP PG P N N 241 GNP O1G O N N 242 GNP O2G O N N 243 GNP O3G O N N 244 GNP N3B N N N 245 GNP PB P N R 246 GNP O1B O N N 247 GNP O2B O N N 248 GNP O3A O N N 249 GNP PA P N S 250 GNP O1A O N N 251 GNP O2A O N N 252 GNP "O5'" O N N 253 GNP "C5'" C N N 254 GNP "C4'" C N R 255 GNP "O4'" O N N 256 GNP "C3'" C N S 257 GNP "O3'" O N N 258 GNP "C2'" C N R 259 GNP "O2'" O N N 260 GNP "C1'" C N R 261 GNP N9 N Y N 262 GNP C8 C Y N 263 GNP N7 N Y N 264 GNP C5 C Y N 265 GNP C6 C Y N 266 GNP O6 O N N 267 GNP N1 N Y N 268 GNP C2 C Y N 269 GNP N2 N N N 270 GNP N3 N Y N 271 GNP C4 C Y N 272 GNP HOG2 H N N 273 GNP HOG3 H N N 274 GNP HNB3 H N N 275 GNP HOB2 H N N 276 GNP HOA2 H N N 277 GNP "H5'2" H N N 278 GNP "H5'1" H N N 279 GNP "H4'" H N N 280 GNP "H3'" H N N 281 GNP "HO3'" H N N 282 GNP "H2'" H N N 283 GNP "HO2'" H N N 284 GNP "H1'" H N N 285 GNP H8 H N N 286 GNP HN1 H N N 287 GNP HN21 H N N 288 GNP HN22 H N N 289 HIS N N N N 290 HIS CA C N S 291 HIS C C N N 292 HIS O O N N 293 HIS CB C N N 294 HIS CG C Y N 295 HIS ND1 N Y N 296 HIS CD2 C Y N 297 HIS CE1 C Y N 298 HIS NE2 N Y N 299 HIS OXT O N N 300 HIS H H N N 301 HIS H2 H N N 302 HIS HA H N N 303 HIS HB2 H N N 304 HIS HB3 H N N 305 HIS HD1 H N N 306 HIS HD2 H N N 307 HIS HE1 H N N 308 HIS HE2 H N N 309 HIS HXT H N N 310 HOH O O N N 311 HOH H1 H N N 312 HOH H2 H N N 313 ILE N N N N 314 ILE CA C N S 315 ILE C C N N 316 ILE O O N N 317 ILE CB C N S 318 ILE CG1 C N N 319 ILE CG2 C N N 320 ILE CD1 C N N 321 ILE OXT O N N 322 ILE H H N N 323 ILE H2 H N N 324 ILE HA H N N 325 ILE HB H N N 326 ILE HG12 H N N 327 ILE HG13 H N N 328 ILE HG21 H N N 329 ILE HG22 H N N 330 ILE HG23 H N N 331 ILE HD11 H N N 332 ILE HD12 H N N 333 ILE HD13 H N N 334 ILE HXT H N N 335 LEU N N N N 336 LEU CA C N S 337 LEU C C N N 338 LEU O O N N 339 LEU CB C N N 340 LEU CG C N N 341 LEU CD1 C N N 342 LEU CD2 C N N 343 LEU OXT O N N 344 LEU H H N N 345 LEU H2 H N N 346 LEU HA H N N 347 LEU HB2 H N N 348 LEU HB3 H N N 349 LEU HG H N N 350 LEU HD11 H N N 351 LEU HD12 H N N 352 LEU HD13 H N N 353 LEU HD21 H N N 354 LEU HD22 H N N 355 LEU HD23 H N N 356 LEU HXT H N N 357 LYS N N N N 358 LYS CA C N S 359 LYS C C N N 360 LYS O O N N 361 LYS CB C N N 362 LYS CG C N N 363 LYS CD C N N 364 LYS CE C N N 365 LYS NZ N N N 366 LYS OXT O N N 367 LYS H H N N 368 LYS H2 H N N 369 LYS HA H N N 370 LYS HB2 H N N 371 LYS HB3 H N N 372 LYS HG2 H N N 373 LYS HG3 H N N 374 LYS HD2 H N N 375 LYS HD3 H N N 376 LYS HE2 H N N 377 LYS HE3 H N N 378 LYS HZ1 H N N 379 LYS HZ2 H N N 380 LYS HZ3 H N N 381 LYS HXT H N N 382 MET N N N N 383 MET CA C N S 384 MET C C N N 385 MET O O N N 386 MET CB C N N 387 MET CG C N N 388 MET SD S N N 389 MET CE C N N 390 MET OXT O N N 391 MET H H N N 392 MET H2 H N N 393 MET HA H N N 394 MET HB2 H N N 395 MET HB3 H N N 396 MET HG2 H N N 397 MET HG3 H N N 398 MET HE1 H N N 399 MET HE2 H N N 400 MET HE3 H N N 401 MET HXT H N N 402 MG MG MG N N 403 MRD C1 C N N 404 MRD C2 C N N 405 MRD O2 O N N 406 MRD CM C N N 407 MRD C3 C N N 408 MRD C4 C N R 409 MRD O4 O N N 410 MRD C5 C N N 411 MRD H1C1 H N N 412 MRD H1C2 H N N 413 MRD H1C3 H N N 414 MRD H2 H N N 415 MRD HMC1 H N N 416 MRD HMC2 H N N 417 MRD HMC3 H N N 418 MRD H3C1 H N N 419 MRD H3C2 H N N 420 MRD H4 H N N 421 MRD HA H N N 422 MRD H5C1 H N N 423 MRD H5C2 H N N 424 MRD H5C3 H N N 425 PHE N N N N 426 PHE CA C N S 427 PHE C C N N 428 PHE O O N N 429 PHE CB C N N 430 PHE CG C Y N 431 PHE CD1 C Y N 432 PHE CD2 C Y N 433 PHE CE1 C Y N 434 PHE CE2 C Y N 435 PHE CZ C Y N 436 PHE OXT O N N 437 PHE H H N N 438 PHE H2 H N N 439 PHE HA H N N 440 PHE HB2 H N N 441 PHE HB3 H N N 442 PHE HD1 H N N 443 PHE HD2 H N N 444 PHE HE1 H N N 445 PHE HE2 H N N 446 PHE HZ H N N 447 PHE HXT H N N 448 PRO N N N N 449 PRO CA C N S 450 PRO C C N N 451 PRO O O N N 452 PRO CB C N N 453 PRO CG C N N 454 PRO CD C N N 455 PRO OXT O N N 456 PRO H H N N 457 PRO HA H N N 458 PRO HB2 H N N 459 PRO HB3 H N N 460 PRO HG2 H N N 461 PRO HG3 H N N 462 PRO HD2 H N N 463 PRO HD3 H N N 464 PRO HXT H N N 465 SER N N N N 466 SER CA C N S 467 SER C C N N 468 SER O O N N 469 SER CB C N N 470 SER OG O N N 471 SER OXT O N N 472 SER H H N N 473 SER H2 H N N 474 SER HA H N N 475 SER HB2 H N N 476 SER HB3 H N N 477 SER HG H N N 478 SER HXT H N N 479 THR N N N N 480 THR CA C N S 481 THR C C N N 482 THR O O N N 483 THR CB C N R 484 THR OG1 O N N 485 THR CG2 C N N 486 THR OXT O N N 487 THR H H N N 488 THR H2 H N N 489 THR HA H N N 490 THR HB H N N 491 THR HG1 H N N 492 THR HG21 H N N 493 THR HG22 H N N 494 THR HG23 H N N 495 THR HXT H N N 496 TRP N N N N 497 TRP CA C N S 498 TRP C C N N 499 TRP O O N N 500 TRP CB C N N 501 TRP CG C Y N 502 TRP CD1 C Y N 503 TRP CD2 C Y N 504 TRP NE1 N Y N 505 TRP CE2 C Y N 506 TRP CE3 C Y N 507 TRP CZ2 C Y N 508 TRP CZ3 C Y N 509 TRP CH2 C Y N 510 TRP OXT O N N 511 TRP H H N N 512 TRP H2 H N N 513 TRP HA H N N 514 TRP HB2 H N N 515 TRP HB3 H N N 516 TRP HD1 H N N 517 TRP HE1 H N N 518 TRP HE3 H N N 519 TRP HZ2 H N N 520 TRP HZ3 H N N 521 TRP HH2 H N N 522 TRP HXT H N N 523 TYR N N N N 524 TYR CA C N S 525 TYR C C N N 526 TYR O O N N 527 TYR CB C N N 528 TYR CG C Y N 529 TYR CD1 C Y N 530 TYR CD2 C Y N 531 TYR CE1 C Y N 532 TYR CE2 C Y N 533 TYR CZ C Y N 534 TYR OH O N N 535 TYR OXT O N N 536 TYR H H N N 537 TYR H2 H N N 538 TYR HA H N N 539 TYR HB2 H N N 540 TYR HB3 H N N 541 TYR HD1 H N N 542 TYR HD2 H N N 543 TYR HE1 H N N 544 TYR HE2 H N N 545 TYR HH H N N 546 TYR HXT H N N 547 U OP3 O N N 548 U P P N N 549 U OP1 O N N 550 U OP2 O N N 551 U "O5'" O N N 552 U "C5'" C N N 553 U "C4'" C N R 554 U "O4'" O N N 555 U "C3'" C N S 556 U "O3'" O N N 557 U "C2'" C N R 558 U "O2'" O N N 559 U "C1'" C N R 560 U N1 N N N 561 U C2 C N N 562 U O2 O N N 563 U N3 N N N 564 U C4 C N N 565 U O4 O N N 566 U C5 C N N 567 U C6 C N N 568 U HOP3 H N N 569 U HOP2 H N N 570 U "H5'" H N N 571 U "H5''" H N N 572 U "H4'" H N N 573 U "H3'" H N N 574 U "HO3'" H N N 575 U "H2'" H N N 576 U "HO2'" H N N 577 U "H1'" H N N 578 U H3 H N N 579 U H5 H N N 580 U H6 H N N 581 VAL N N N N 582 VAL CA C N S 583 VAL C C N N 584 VAL O O N N 585 VAL CB C N N 586 VAL CG1 C N N 587 VAL CG2 C N N 588 VAL OXT O N N 589 VAL H H N N 590 VAL H2 H N N 591 VAL HA H N N 592 VAL HB H N N 593 VAL HG11 H N N 594 VAL HG12 H N N 595 VAL HG13 H N N 596 VAL HG21 H N N 597 VAL HG22 H N N 598 VAL HG23 H N N 599 VAL HXT H N N 600 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 ALA N CA sing N N 46 ALA N H sing N N 47 ALA N H2 sing N N 48 ALA CA C sing N N 49 ALA CA CB sing N N 50 ALA CA HA sing N N 51 ALA C O doub N N 52 ALA C OXT sing N N 53 ALA CB HB1 sing N N 54 ALA CB HB2 sing N N 55 ALA CB HB3 sing N N 56 ALA OXT HXT sing N N 57 ARG N CA sing N N 58 ARG N H sing N N 59 ARG N H2 sing N N 60 ARG CA C sing N N 61 ARG CA CB sing N N 62 ARG CA HA sing N N 63 ARG C O doub N N 64 ARG C OXT sing N N 65 ARG CB CG sing N N 66 ARG CB HB2 sing N N 67 ARG CB HB3 sing N N 68 ARG CG CD sing N N 69 ARG CG HG2 sing N N 70 ARG CG HG3 sing N N 71 ARG CD NE sing N N 72 ARG CD HD2 sing N N 73 ARG CD HD3 sing N N 74 ARG NE CZ sing N N 75 ARG NE HE sing N N 76 ARG CZ NH1 sing N N 77 ARG CZ NH2 doub N N 78 ARG NH1 HH11 sing N N 79 ARG NH1 HH12 sing N N 80 ARG NH2 HH21 sing N N 81 ARG NH2 HH22 sing N N 82 ARG OXT HXT sing N N 83 ASN N CA sing N N 84 ASN N H sing N N 85 ASN N H2 sing N N 86 ASN CA C sing N N 87 ASN CA CB sing N N 88 ASN CA HA sing N N 89 ASN C O doub N N 90 ASN C OXT sing N N 91 ASN CB CG sing N N 92 ASN CB HB2 sing N N 93 ASN CB HB3 sing N N 94 ASN CG OD1 doub N N 95 ASN CG ND2 sing N N 96 ASN ND2 HD21 sing N N 97 ASN ND2 HD22 sing N N 98 ASN OXT HXT sing N N 99 ASP N CA sing N N 100 ASP N H sing N N 101 ASP N H2 sing N N 102 ASP CA C sing N N 103 ASP CA CB sing N N 104 ASP CA HA sing N N 105 ASP C O doub N N 106 ASP C OXT sing N N 107 ASP CB CG sing N N 108 ASP CB HB2 sing N N 109 ASP CB HB3 sing N N 110 ASP CG OD1 doub N N 111 ASP CG OD2 sing N N 112 ASP OD2 HD2 sing N N 113 ASP OXT HXT sing N N 114 C OP3 P sing N N 115 C OP3 HOP3 sing N N 116 C P OP1 doub N N 117 C P OP2 sing N N 118 C P "O5'" sing N N 119 C OP2 HOP2 sing N N 120 C "O5'" "C5'" sing N N 121 C "C5'" "C4'" sing N N 122 C "C5'" "H5'" sing N N 123 C "C5'" "H5''" sing N N 124 C "C4'" "O4'" sing N N 125 C "C4'" "C3'" sing N N 126 C "C4'" "H4'" sing N N 127 C "O4'" "C1'" sing N N 128 C "C3'" "O3'" sing N N 129 C "C3'" "C2'" sing N N 130 C "C3'" "H3'" sing N N 131 C "O3'" "HO3'" sing N N 132 C "C2'" "O2'" sing N N 133 C "C2'" "C1'" sing N N 134 C "C2'" "H2'" sing N N 135 C "O2'" "HO2'" sing N N 136 C "C1'" N1 sing N N 137 C "C1'" "H1'" sing N N 138 C N1 C2 sing N N 139 C N1 C6 sing N N 140 C C2 O2 doub N N 141 C C2 N3 sing N N 142 C N3 C4 doub N N 143 C C4 N4 sing N N 144 C C4 C5 sing N N 145 C N4 H41 sing N N 146 C N4 H42 sing N N 147 C C5 C6 doub N N 148 C C5 H5 sing N N 149 C C6 H6 sing N N 150 G OP3 P sing N N 151 G OP3 HOP3 sing N N 152 G P OP1 doub N N 153 G P OP2 sing N N 154 G P "O5'" sing N N 155 G OP2 HOP2 sing N N 156 G "O5'" "C5'" sing N N 157 G "C5'" "C4'" sing N N 158 G "C5'" "H5'" sing N N 159 G "C5'" "H5''" sing N N 160 G "C4'" "O4'" sing N N 161 G "C4'" "C3'" sing N N 162 G "C4'" "H4'" sing N N 163 G "O4'" "C1'" sing N N 164 G "C3'" "O3'" sing N N 165 G "C3'" "C2'" sing N N 166 G "C3'" "H3'" sing N N 167 G "O3'" "HO3'" sing N N 168 G "C2'" "O2'" sing N N 169 G "C2'" "C1'" sing N N 170 G "C2'" "H2'" sing N N 171 G "O2'" "HO2'" sing N N 172 G "C1'" N9 sing N N 173 G "C1'" "H1'" sing N N 174 G N9 C8 sing Y N 175 G N9 C4 sing Y N 176 G C8 N7 doub Y N 177 G C8 H8 sing N N 178 G N7 C5 sing Y N 179 G C5 C6 sing N N 180 G C5 C4 doub Y N 181 G C6 O6 doub N N 182 G C6 N1 sing N N 183 G N1 C2 sing N N 184 G N1 H1 sing N N 185 G C2 N2 sing N N 186 G C2 N3 doub N N 187 G N2 H21 sing N N 188 G N2 H22 sing N N 189 G N3 C4 sing N N 190 GLN N CA sing N N 191 GLN N H sing N N 192 GLN N H2 sing N N 193 GLN CA C sing N N 194 GLN CA CB sing N N 195 GLN CA HA sing N N 196 GLN C O doub N N 197 GLN C OXT sing N N 198 GLN CB CG sing N N 199 GLN CB HB2 sing N N 200 GLN CB HB3 sing N N 201 GLN CG CD sing N N 202 GLN CG HG2 sing N N 203 GLN CG HG3 sing N N 204 GLN CD OE1 doub N N 205 GLN CD NE2 sing N N 206 GLN NE2 HE21 sing N N 207 GLN NE2 HE22 sing N N 208 GLN OXT HXT sing N N 209 GLU N CA sing N N 210 GLU N H sing N N 211 GLU N H2 sing N N 212 GLU CA C sing N N 213 GLU CA CB sing N N 214 GLU CA HA sing N N 215 GLU C O doub N N 216 GLU C OXT sing N N 217 GLU CB CG sing N N 218 GLU CB HB2 sing N N 219 GLU CB HB3 sing N N 220 GLU CG CD sing N N 221 GLU CG HG2 sing N N 222 GLU CG HG3 sing N N 223 GLU CD OE1 doub N N 224 GLU CD OE2 sing N N 225 GLU OE2 HE2 sing N N 226 GLU OXT HXT sing N N 227 GLY N CA sing N N 228 GLY N H sing N N 229 GLY N H2 sing N N 230 GLY CA C sing N N 231 GLY CA HA2 sing N N 232 GLY CA HA3 sing N N 233 GLY C O doub N N 234 GLY C OXT sing N N 235 GLY OXT HXT sing N N 236 GNP PG O1G doub N N 237 GNP PG O2G sing N N 238 GNP PG O3G sing N N 239 GNP PG N3B sing N N 240 GNP O2G HOG2 sing N N 241 GNP O3G HOG3 sing N N 242 GNP N3B PB sing N N 243 GNP N3B HNB3 sing N N 244 GNP PB O1B doub N N 245 GNP PB O2B sing N N 246 GNP PB O3A sing N N 247 GNP O2B HOB2 sing N N 248 GNP O3A PA sing N N 249 GNP PA O1A doub N N 250 GNP PA O2A sing N N 251 GNP PA "O5'" sing N N 252 GNP O2A HOA2 sing N N 253 GNP "O5'" "C5'" sing N N 254 GNP "C5'" "C4'" sing N N 255 GNP "C5'" "H5'2" sing N N 256 GNP "C5'" "H5'1" sing N N 257 GNP "C4'" "O4'" sing N N 258 GNP "C4'" "C3'" sing N N 259 GNP "C4'" "H4'" sing N N 260 GNP "O4'" "C1'" sing N N 261 GNP "C3'" "O3'" sing N N 262 GNP "C3'" "C2'" sing N N 263 GNP "C3'" "H3'" sing N N 264 GNP "O3'" "HO3'" sing N N 265 GNP "C2'" "O2'" sing N N 266 GNP "C2'" "C1'" sing N N 267 GNP "C2'" "H2'" sing N N 268 GNP "O2'" "HO2'" sing N N 269 GNP "C1'" N9 sing N N 270 GNP "C1'" "H1'" sing N N 271 GNP N9 C8 sing Y N 272 GNP N9 C4 sing Y N 273 GNP C8 N7 doub Y N 274 GNP C8 H8 sing N N 275 GNP N7 C5 sing Y N 276 GNP C5 C6 sing Y N 277 GNP C5 C4 doub Y N 278 GNP C6 O6 doub N N 279 GNP C6 N1 sing Y N 280 GNP N1 C2 sing Y N 281 GNP N1 HN1 sing N N 282 GNP C2 N2 sing N N 283 GNP C2 N3 doub Y N 284 GNP N2 HN21 sing N N 285 GNP N2 HN22 sing N N 286 GNP N3 C4 sing Y N 287 HIS N CA sing N N 288 HIS N H sing N N 289 HIS N H2 sing N N 290 HIS CA C sing N N 291 HIS CA CB sing N N 292 HIS CA HA sing N N 293 HIS C O doub N N 294 HIS C OXT sing N N 295 HIS CB CG sing N N 296 HIS CB HB2 sing N N 297 HIS CB HB3 sing N N 298 HIS CG ND1 sing Y N 299 HIS CG CD2 doub Y N 300 HIS ND1 CE1 doub Y N 301 HIS ND1 HD1 sing N N 302 HIS CD2 NE2 sing Y N 303 HIS CD2 HD2 sing N N 304 HIS CE1 NE2 sing Y N 305 HIS CE1 HE1 sing N N 306 HIS NE2 HE2 sing N N 307 HIS OXT HXT sing N N 308 HOH O H1 sing N N 309 HOH O H2 sing N N 310 ILE N CA sing N N 311 ILE N H sing N N 312 ILE N H2 sing N N 313 ILE CA C sing N N 314 ILE CA CB sing N N 315 ILE CA HA sing N N 316 ILE C O doub N N 317 ILE C OXT sing N N 318 ILE CB CG1 sing N N 319 ILE CB CG2 sing N N 320 ILE CB HB sing N N 321 ILE CG1 CD1 sing N N 322 ILE CG1 HG12 sing N N 323 ILE CG1 HG13 sing N N 324 ILE CG2 HG21 sing N N 325 ILE CG2 HG22 sing N N 326 ILE CG2 HG23 sing N N 327 ILE CD1 HD11 sing N N 328 ILE CD1 HD12 sing N N 329 ILE CD1 HD13 sing N N 330 ILE OXT HXT sing N N 331 LEU N CA sing N N 332 LEU N H sing N N 333 LEU N H2 sing N N 334 LEU CA C sing N N 335 LEU CA CB sing N N 336 LEU CA HA sing N N 337 LEU C O doub N N 338 LEU C OXT sing N N 339 LEU CB CG sing N N 340 LEU CB HB2 sing N N 341 LEU CB HB3 sing N N 342 LEU CG CD1 sing N N 343 LEU CG CD2 sing N N 344 LEU CG HG sing N N 345 LEU CD1 HD11 sing N N 346 LEU CD1 HD12 sing N N 347 LEU CD1 HD13 sing N N 348 LEU CD2 HD21 sing N N 349 LEU CD2 HD22 sing N N 350 LEU CD2 HD23 sing N N 351 LEU OXT HXT sing N N 352 LYS N CA sing N N 353 LYS N H sing N N 354 LYS N H2 sing N N 355 LYS CA C sing N N 356 LYS CA CB sing N N 357 LYS CA HA sing N N 358 LYS C O doub N N 359 LYS C OXT sing N N 360 LYS CB CG sing N N 361 LYS CB HB2 sing N N 362 LYS CB HB3 sing N N 363 LYS CG CD sing N N 364 LYS CG HG2 sing N N 365 LYS CG HG3 sing N N 366 LYS CD CE sing N N 367 LYS CD HD2 sing N N 368 LYS CD HD3 sing N N 369 LYS CE NZ sing N N 370 LYS CE HE2 sing N N 371 LYS CE HE3 sing N N 372 LYS NZ HZ1 sing N N 373 LYS NZ HZ2 sing N N 374 LYS NZ HZ3 sing N N 375 LYS OXT HXT sing N N 376 MET N CA sing N N 377 MET N H sing N N 378 MET N H2 sing N N 379 MET CA C sing N N 380 MET CA CB sing N N 381 MET CA HA sing N N 382 MET C O doub N N 383 MET C OXT sing N N 384 MET CB CG sing N N 385 MET CB HB2 sing N N 386 MET CB HB3 sing N N 387 MET CG SD sing N N 388 MET CG HG2 sing N N 389 MET CG HG3 sing N N 390 MET SD CE sing N N 391 MET CE HE1 sing N N 392 MET CE HE2 sing N N 393 MET CE HE3 sing N N 394 MET OXT HXT sing N N 395 MRD C1 C2 sing N N 396 MRD C1 H1C1 sing N N 397 MRD C1 H1C2 sing N N 398 MRD C1 H1C3 sing N N 399 MRD C2 O2 sing N N 400 MRD C2 CM sing N N 401 MRD C2 C3 sing N N 402 MRD O2 H2 sing N N 403 MRD CM HMC1 sing N N 404 MRD CM HMC2 sing N N 405 MRD CM HMC3 sing N N 406 MRD C3 C4 sing N N 407 MRD C3 H3C1 sing N N 408 MRD C3 H3C2 sing N N 409 MRD C4 O4 sing N N 410 MRD C4 C5 sing N N 411 MRD C4 H4 sing N N 412 MRD O4 HA sing N N 413 MRD C5 H5C1 sing N N 414 MRD C5 H5C2 sing N N 415 MRD C5 H5C3 sing N N 416 PHE N CA sing N N 417 PHE N H sing N N 418 PHE N H2 sing N N 419 PHE CA C sing N N 420 PHE CA CB sing N N 421 PHE CA HA sing N N 422 PHE C O doub N N 423 PHE C OXT sing N N 424 PHE CB CG sing N N 425 PHE CB HB2 sing N N 426 PHE CB HB3 sing N N 427 PHE CG CD1 doub Y N 428 PHE CG CD2 sing Y N 429 PHE CD1 CE1 sing Y N 430 PHE CD1 HD1 sing N N 431 PHE CD2 CE2 doub Y N 432 PHE CD2 HD2 sing N N 433 PHE CE1 CZ doub Y N 434 PHE CE1 HE1 sing N N 435 PHE CE2 CZ sing Y N 436 PHE CE2 HE2 sing N N 437 PHE CZ HZ sing N N 438 PHE OXT HXT sing N N 439 PRO N CA sing N N 440 PRO N CD sing N N 441 PRO N H sing N N 442 PRO CA C sing N N 443 PRO CA CB sing N N 444 PRO CA HA sing N N 445 PRO C O doub N N 446 PRO C OXT sing N N 447 PRO CB CG sing N N 448 PRO CB HB2 sing N N 449 PRO CB HB3 sing N N 450 PRO CG CD sing N N 451 PRO CG HG2 sing N N 452 PRO CG HG3 sing N N 453 PRO CD HD2 sing N N 454 PRO CD HD3 sing N N 455 PRO OXT HXT sing N N 456 SER N CA sing N N 457 SER N H sing N N 458 SER N H2 sing N N 459 SER CA C sing N N 460 SER CA CB sing N N 461 SER CA HA sing N N 462 SER C O doub N N 463 SER C OXT sing N N 464 SER CB OG sing N N 465 SER CB HB2 sing N N 466 SER CB HB3 sing N N 467 SER OG HG sing N N 468 SER OXT HXT sing N N 469 THR N CA sing N N 470 THR N H sing N N 471 THR N H2 sing N N 472 THR CA C sing N N 473 THR CA CB sing N N 474 THR CA HA sing N N 475 THR C O doub N N 476 THR C OXT sing N N 477 THR CB OG1 sing N N 478 THR CB CG2 sing N N 479 THR CB HB sing N N 480 THR OG1 HG1 sing N N 481 THR CG2 HG21 sing N N 482 THR CG2 HG22 sing N N 483 THR CG2 HG23 sing N N 484 THR OXT HXT sing N N 485 TRP N CA sing N N 486 TRP N H sing N N 487 TRP N H2 sing N N 488 TRP CA C sing N N 489 TRP CA CB sing N N 490 TRP CA HA sing N N 491 TRP C O doub N N 492 TRP C OXT sing N N 493 TRP CB CG sing N N 494 TRP CB HB2 sing N N 495 TRP CB HB3 sing N N 496 TRP CG CD1 doub Y N 497 TRP CG CD2 sing Y N 498 TRP CD1 NE1 sing Y N 499 TRP CD1 HD1 sing N N 500 TRP CD2 CE2 doub Y N 501 TRP CD2 CE3 sing Y N 502 TRP NE1 CE2 sing Y N 503 TRP NE1 HE1 sing N N 504 TRP CE2 CZ2 sing Y N 505 TRP CE3 CZ3 doub Y N 506 TRP CE3 HE3 sing N N 507 TRP CZ2 CH2 doub Y N 508 TRP CZ2 HZ2 sing N N 509 TRP CZ3 CH2 sing Y N 510 TRP CZ3 HZ3 sing N N 511 TRP CH2 HH2 sing N N 512 TRP OXT HXT sing N N 513 TYR N CA sing N N 514 TYR N H sing N N 515 TYR N H2 sing N N 516 TYR CA C sing N N 517 TYR CA CB sing N N 518 TYR CA HA sing N N 519 TYR C O doub N N 520 TYR C OXT sing N N 521 TYR CB CG sing N N 522 TYR CB HB2 sing N N 523 TYR CB HB3 sing N N 524 TYR CG CD1 doub Y N 525 TYR CG CD2 sing Y N 526 TYR CD1 CE1 sing Y N 527 TYR CD1 HD1 sing N N 528 TYR CD2 CE2 doub Y N 529 TYR CD2 HD2 sing N N 530 TYR CE1 CZ doub Y N 531 TYR CE1 HE1 sing N N 532 TYR CE2 CZ sing Y N 533 TYR CE2 HE2 sing N N 534 TYR CZ OH sing N N 535 TYR OH HH sing N N 536 TYR OXT HXT sing N N 537 U OP3 P sing N N 538 U OP3 HOP3 sing N N 539 U P OP1 doub N N 540 U P OP2 sing N N 541 U P "O5'" sing N N 542 U OP2 HOP2 sing N N 543 U "O5'" "C5'" sing N N 544 U "C5'" "C4'" sing N N 545 U "C5'" "H5'" sing N N 546 U "C5'" "H5''" sing N N 547 U "C4'" "O4'" sing N N 548 U "C4'" "C3'" sing N N 549 U "C4'" "H4'" sing N N 550 U "O4'" "C1'" sing N N 551 U "C3'" "O3'" sing N N 552 U "C3'" "C2'" sing N N 553 U "C3'" "H3'" sing N N 554 U "O3'" "HO3'" sing N N 555 U "C2'" "O2'" sing N N 556 U "C2'" "C1'" sing N N 557 U "C2'" "H2'" sing N N 558 U "O2'" "HO2'" sing N N 559 U "C1'" N1 sing N N 560 U "C1'" "H1'" sing N N 561 U N1 C2 sing N N 562 U N1 C6 sing N N 563 U C2 O2 doub N N 564 U C2 N3 sing N N 565 U N3 C4 sing N N 566 U N3 H3 sing N N 567 U C4 O4 doub N N 568 U C4 C5 sing N N 569 U C5 C6 doub N N 570 U C5 H5 sing N N 571 U C6 H6 sing N N 572 VAL N CA sing N N 573 VAL N H sing N N 574 VAL N H2 sing N N 575 VAL CA C sing N N 576 VAL CA CB sing N N 577 VAL CA HA sing N N 578 VAL C O doub N N 579 VAL C OXT sing N N 580 VAL CB CG1 sing N N 581 VAL CB CG2 sing N N 582 VAL CB HB sing N N 583 VAL CG1 HG11 sing N N 584 VAL CG1 HG12 sing N N 585 VAL CG1 HG13 sing N N 586 VAL CG2 HG21 sing N N 587 VAL CG2 HG22 sing N N 588 VAL CG2 HG23 sing N N 589 VAL OXT HXT sing N N 590 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3R9W 'double helix' 3R9W 'a-form double helix' 3R9W 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 1 1_555 B G 24 2_455 -0.165 0.077 0.121 7.304 -15.229 0.323 1 B_C1506:G1529_B B 1506 ? B 1529 ? 19 1 1 B A 2 1_555 B U 23 2_455 -0.395 -0.144 0.155 0.455 -13.175 7.981 2 B_A1507:U1528_B B 1507 ? B 1528 ? 20 1 1 B A 3 1_555 B U 22 2_455 -0.113 0.012 0.171 5.904 -13.017 3.341 3 B_A1508:U1527_B B 1508 ? B 1527 ? 20 1 1 B C 4 1_555 B G 21 2_455 -0.189 0.147 -0.038 6.854 -10.092 -0.068 4 B_C1509:G1526_B B 1509 ? B 1526 ? 19 1 1 B C 5 1_555 B G 20 2_455 -0.009 0.203 -0.087 3.930 -12.818 6.228 5 B_C1510:G1525_B B 1510 ? B 1525 ? 19 1 1 B G 6 1_555 B C 19 2_455 -0.249 -0.136 0.354 3.462 -10.349 0.986 6 B_G1511:C1524_B B 1511 ? B 1524 ? 19 1 1 B U 7 1_555 B G 18 2_455 1.823 -0.074 -0.194 10.743 -26.437 9.630 7 B_U1512:G1523_B B 1512 ? B 1523 ? 28 1 1 B A 8 1_555 B U 17 2_455 -0.215 -0.072 -0.529 2.674 -11.865 1.126 8 B_A1513:U1522_B B 1513 ? B 1522 ? 20 1 1 B G 9 1_555 B C 16 2_455 0.148 0.107 -0.417 -3.463 -10.309 5.554 9 B_G1514:C1521_B B 1514 ? B 1521 ? 19 1 1 B G 10 1_555 B C 15 2_455 1.092 -0.206 -1.124 -22.867 -14.857 1.746 10 B_G1515:C1520_B B 1515 ? B 1520 ? 19 1 1 B G 11 1_555 B A 14 2_455 6.676 -4.165 0.170 -5.430 -3.684 -3.007 11 B_G1516:A1519_B B 1516 ? B 1519 ? 11 9 1 B G 12 1_555 B A 13 2_455 6.416 -6.252 0.419 20.638 -1.490 -12.049 12 B_G1517:A1518_B B 1517 ? B 1518 ? ? 10 1 B A 13 1_555 B G 12 2_455 -6.416 -6.252 0.419 -20.638 -1.490 -12.049 13 B_A1518:G1517_B B 1518 ? B 1517 ? ? 10 1 B A 14 1_555 B G 11 2_455 -6.676 -4.165 0.170 5.430 -3.684 -3.007 14 B_A1519:G1516_B B 1519 ? B 1516 ? 11 9 1 B C 15 1_555 B G 10 2_455 -1.092 -0.206 -1.124 22.867 -14.857 1.746 15 B_C1520:G1515_B B 1520 ? B 1515 ? 19 1 1 B C 16 1_555 B G 9 2_455 -0.148 0.107 -0.417 3.463 -10.309 5.554 16 B_C1521:G1514_B B 1521 ? B 1514 ? 19 1 1 B U 17 1_555 B A 8 2_455 0.215 -0.072 -0.529 -2.674 -11.865 1.126 17 B_U1522:A1513_B B 1522 ? B 1513 ? 20 1 1 B G 18 1_555 B U 7 2_455 -1.823 -0.074 -0.194 -10.743 -26.437 9.630 18 B_G1523:U1512_B B 1523 ? B 1512 ? 28 1 1 B C 19 1_555 B G 6 2_455 0.249 -0.136 0.354 -3.462 -10.349 0.986 19 B_C1524:G1511_B B 1524 ? B 1511 ? 19 1 1 B G 20 1_555 B C 5 2_455 0.009 0.203 -0.087 -3.930 -12.818 6.228 20 B_G1525:C1510_B B 1525 ? B 1510 ? 19 1 1 B G 21 1_555 B C 4 2_455 0.189 0.147 -0.038 -6.854 -10.092 -0.068 21 B_G1526:C1509_B B 1526 ? B 1509 ? 19 1 1 B U 22 1_555 B A 3 2_455 0.113 0.012 0.171 -5.904 -13.017 3.341 22 B_U1527:A1508_B B 1527 ? B 1508 ? 20 1 1 B U 23 1_555 B A 2 2_455 0.395 -0.144 0.155 -0.455 -13.175 7.982 23 B_U1528:A1507_B B 1528 ? B 1507 ? 20 1 1 B G 24 1_555 B C 1 2_455 0.165 0.077 0.121 -7.304 -15.229 0.323 24 B_G1529:C1506_B B 1529 ? B 1506 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 1 1_555 B G 24 2_455 B A 2 1_555 B U 23 2_455 -0.124 -1.879 3.150 -2.312 11.692 31.089 -4.976 -0.117 2.315 20.877 4.128 33.243 1 BB_C1506A1507:U1528G1529_BB B 1506 ? B 1529 ? B 1507 ? B 1528 ? 1 B A 2 1_555 B U 23 2_455 B A 3 1_555 B U 22 2_455 -0.452 -1.117 3.080 -0.938 4.653 33.574 -2.605 0.636 2.914 8.005 1.614 33.898 2 BB_A1507A1508:U1527U1528_BB B 1507 ? B 1528 ? B 1508 ? B 1527 ? 1 B A 3 1_555 B U 22 2_455 B C 4 1_555 B G 21 2_455 0.688 -1.668 3.128 3.897 4.380 31.963 -3.701 -0.591 2.941 7.871 -7.002 32.483 3 BB_A1508C1509:G1526U1527_BB B 1508 ? B 1527 ? B 1509 ? B 1526 ? 1 B C 4 1_555 B G 21 2_455 B C 5 1_555 B G 20 2_455 0.124 -2.148 3.346 2.176 5.995 27.865 -5.655 0.222 2.832 12.247 -4.446 28.572 4 BB_C1509C1510:G1525G1526_BB B 1509 ? B 1526 ? B 1510 ? B 1525 ? 1 B C 5 1_555 B G 20 2_455 B G 6 1_555 B C 19 2_455 -0.069 -1.623 3.074 -3.820 12.139 30.900 -4.546 -0.420 2.285 21.667 6.818 33.358 5 BB_C1510G1511:C1524G1525_BB B 1510 ? B 1525 ? B 1511 ? B 1524 ? 1 B G 6 1_555 B C 19 2_455 B U 7 1_555 B G 18 2_455 0.654 -0.885 2.930 10.029 9.776 40.743 -2.071 -0.007 2.737 13.566 -13.918 42.986 6 BB_G1511U1512:G1523C1524_BB B 1511 ? B 1524 ? B 1512 ? B 1523 ? 1 B U 7 1_555 B G 18 2_455 B A 8 1_555 B U 17 2_455 -0.652 -1.287 3.168 2.286 20.262 24.878 -5.362 1.522 1.625 39.608 -4.469 32.065 7 BB_U1512A1513:U1522G1523_BB B 1512 ? B 1523 ? B 1513 ? B 1522 ? 1 B A 8 1_555 B U 17 2_455 B G 9 1_555 B C 16 2_455 0.182 -1.343 3.222 -1.252 13.599 28.349 -4.768 -0.547 2.338 25.949 2.389 31.406 8 BB_A1513G1514:C1521U1522_BB B 1513 ? B 1522 ? B 1514 ? B 1521 ? 1 B G 9 1_555 B C 16 2_455 B G 10 1_555 B C 15 2_455 -0.102 -1.898 3.812 8.039 16.868 33.124 -5.162 1.224 2.504 27.074 -12.903 37.902 9 BB_G1514G1515:C1520C1521_BB B 1514 ? B 1521 ? B 1515 ? B 1520 ? 1 B G 10 1_555 B C 15 2_455 B G 11 1_555 B A 14 2_455 -0.120 -0.632 2.826 -0.895 14.254 60.884 -1.161 0.082 2.636 13.861 0.871 62.380 10 BB_G1515G1516:A1519C1520_BB B 1515 ? B 1520 ? B 1516 ? B 1519 ? 1 B G 11 1_555 B A 14 2_455 B G 12 1_555 B A 13 2_455 0.593 -0.798 2.721 6.361 0.867 38.177 -1.294 -0.236 2.763 1.314 -9.642 38.693 11 BB_G1516G1517:A1518A1519_BB B 1516 ? B 1519 ? B 1517 ? B 1518 ? 1 B G 12 1_555 B A 13 2_455 B A 13 1_555 B G 12 2_455 0.000 -2.203 4.626 0.000 -2.293 -25.154 5.962 0.000 4.410 5.252 0.000 -25.256 12 BB_G1517A1518:G1517A1518_BB B 1517 ? B 1518 ? B 1518 ? B 1517 ? 1 B A 13 1_555 B G 12 2_455 B A 14 1_555 B G 11 2_455 -0.593 -0.798 2.721 -6.361 0.867 38.177 -1.294 0.236 2.763 1.314 9.642 38.693 13 BB_A1518A1519:G1516G1517_BB B 1518 ? B 1517 ? B 1519 ? B 1516 ? 1 B A 14 1_555 B G 11 2_455 B C 15 1_555 B G 10 2_455 0.120 -0.632 2.826 0.895 14.254 60.884 -1.161 -0.082 2.636 13.861 -0.871 62.380 14 BB_A1519C1520:G1515G1516_BB B 1519 ? B 1516 ? B 1520 ? B 1515 ? 1 B C 15 1_555 B G 10 2_455 B C 16 1_555 B G 9 2_455 0.102 -1.898 3.812 -8.039 16.868 33.124 -5.162 -1.224 2.504 27.074 12.903 37.902 15 BB_C1520C1521:G1514G1515_BB B 1520 ? B 1515 ? B 1521 ? B 1514 ? 1 B C 16 1_555 B G 9 2_455 B U 17 1_555 B A 8 2_455 -0.182 -1.343 3.222 1.252 13.599 28.349 -4.768 0.547 2.338 25.949 -2.389 31.406 16 BB_C1521U1522:A1513G1514_BB B 1521 ? B 1514 ? B 1522 ? B 1513 ? 1 B U 17 1_555 B A 8 2_455 B G 18 1_555 B U 7 2_455 0.652 -1.287 3.168 -2.286 20.262 24.878 -5.362 -1.522 1.625 39.608 4.469 32.065 17 BB_U1522G1523:U1512A1513_BB B 1522 ? B 1513 ? B 1523 ? B 1512 ? 1 B G 18 1_555 B U 7 2_455 B C 19 1_555 B G 6 2_455 -0.654 -0.885 2.930 -10.029 9.776 40.743 -2.071 0.007 2.737 13.566 13.918 42.986 18 BB_G1523C1524:G1511U1512_BB B 1523 ? B 1512 ? B 1524 ? B 1511 ? 1 B C 19 1_555 B G 6 2_455 B G 20 1_555 B C 5 2_455 0.069 -1.623 3.074 3.820 12.139 30.900 -4.546 0.420 2.285 21.667 -6.818 33.358 19 BB_C1524G1525:C1510G1511_BB B 1524 ? B 1511 ? B 1525 ? B 1510 ? 1 B G 20 1_555 B C 5 2_455 B G 21 1_555 B C 4 2_455 -0.124 -2.148 3.346 -2.176 5.995 27.865 -5.655 -0.222 2.832 12.247 4.446 28.572 20 BB_G1525G1526:C1509C1510_BB B 1525 ? B 1510 ? B 1526 ? B 1509 ? 1 B G 21 1_555 B C 4 2_455 B U 22 1_555 B A 3 2_455 -0.688 -1.668 3.128 -3.897 4.380 31.963 -3.701 0.591 2.941 7.871 7.002 32.483 21 BB_G1526U1527:A1508C1509_BB B 1526 ? B 1509 ? B 1527 ? B 1508 ? 1 B U 22 1_555 B A 3 2_455 B U 23 1_555 B A 2 2_455 0.452 -1.117 3.080 0.938 4.653 33.574 -2.605 -0.636 2.914 8.005 -1.614 33.898 22 BB_U1527U1528:A1507A1508_BB B 1527 ? B 1508 ? B 1528 ? B 1507 ? 1 B U 23 1_555 B A 2 2_455 B G 24 1_555 B C 1 2_455 0.124 -1.879 3.150 2.312 11.692 31.089 -4.976 0.117 2.315 20.877 -4.128 33.243 23 BB_U1528G1529:C1506A1507_BB B 1528 ? B 1507 ? B 1529 ? B 1506 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 5 'ACETATE ION' ACT 6 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 7 'CALCIUM ION' CA 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3IEV _pdbx_initial_refinement_model.details ? #