HEADER VIRUS 26-MAR-11 3RA2 TITLE STRUCTURAL STUDIES OF AAV8 CAPSID TRANSITIONS ASSOCIATED WITH TITLE 2 ENDOSOMAL TRAFFICKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 220-738; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS - 8; SOURCE 3 ORGANISM_TAXID: 202813; SOURCE 4 STRAIN: SEROTYPE 8; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: MAMMALIAN KIDNEY CELLS HEK293 KEYWDS BETA BARREL, VIRAL CAPSID, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR H.-J.NAM,B.GURDA,R.MCKENNA,M.PORTER,B.BYRNE,M.SALGANIK,N.MUZYCZKA, AUTHOR 2 M.AGBANDJE-MCKENNA REVDAT 4 21-FEB-24 3RA2 1 REMARK REVDAT 3 26-JUN-13 3RA2 1 JRNL REVDAT 2 16-NOV-11 3RA2 1 CRYST1 REVDAT 1 21-SEP-11 3RA2 0 JRNL AUTH H.J.NAM,B.L.GURDA,R.MCKENNA,M.POTTER,B.BYRNE,M.SALGANIK, JRNL AUTH 2 N.MUZYCZKA,M.AGBANDJE-MCKENNA JRNL TITL STRUCTURAL STUDIES OF ADENO-ASSOCIATED VIRUS SEROTYPE 8 JRNL TITL 2 CAPSID TRANSITIONS ASSOCIATED WITH ENDOSOMAL TRAFFICKING. JRNL REF J.VIROL. V. 85 11791 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21900159 JRNL DOI 10.1128/JVI.05305-11 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 197009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 10174 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.18700 REMARK 3 B22 (A**2) : 8.18700 REMARK 3 B33 (A**2) : -16.37500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.007 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.774 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.803 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 23.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 207183 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS PH 7.5, 4% PEG 8000, 1 M REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 224.34500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 224.34500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 224.34500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 224.34500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 224.34500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 224.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.563661 0.755759 0.333337 75.15805 REMARK 350 BIOMT2 2 -0.755763 0.309017 0.577348 -18.74267 REMARK 350 BIOMT3 2 0.333329 -0.577353 0.745356 -57.41576 REMARK 350 BIOMT1 3 -0.142350 0.467082 0.872680 84.21795 REMARK 350 BIOMT2 3 -0.467091 -0.809017 0.356816 -114.48502 REMARK 350 BIOMT3 3 0.872676 -0.356828 0.333333 -64.33741 REMARK 350 BIOMT1 4 -0.142350 -0.467091 0.872676 14.65924 REMARK 350 BIOMT2 4 0.467082 -0.809017 -0.356828 -154.91438 REMARK 350 BIOMT3 4 0.872681 0.356816 0.333333 -11.19947 REMARK 350 BIOMT1 5 0.563661 -0.755763 0.333329 -37.39032 REMARK 350 BIOMT2 5 0.755759 0.309017 -0.577353 -84.15874 REMARK 350 BIOMT3 5 0.333337 0.577348 0.745356 28.56324 REMARK 350 BIOMT1 6 -0.936338 0.110264 0.333337 220.54958 REMARK 350 BIOMT2 6 0.110264 -0.809020 0.577346 -213.68439 REMARK 350 BIOMT3 6 0.333337 0.577346 0.745357 28.56301 REMARK 350 BIOMT1 7 -0.500000 -0.866025 -0.000001 128.97083 REMARK 350 BIOMT2 7 0.866025 -0.500000 -0.000002 -223.38273 REMARK 350 BIOMT3 7 0.000002 -0.000002 1.000000 -0.00034 REMARK 350 BIOMT1 8 0.372679 -0.645496 -0.666667 107.62349 REMARK 350 BIOMT2 8 0.866026 0.500000 0.000003 -148.92249 REMARK 350 BIOMT3 8 0.333332 -0.577352 0.745355 -57.41595 REMARK 350 BIOMT1 9 0.475687 0.467089 -0.745353 186.00886 REMARK 350 BIOMT2 9 0.110265 0.809014 0.577355 -93.20519 REMARK 350 BIOMT3 9 0.872676 -0.356826 0.333334 -64.33740 REMARK 350 BIOMT1 10 -0.333330 0.934174 -0.127316 255.80102 REMARK 350 BIOMT2 10 -0.356821 -0.000005 0.934173 -133.23025 REMARK 350 BIOMT3 10 0.872679 0.356817 0.333335 -11.19948 REMARK 350 BIOMT1 11 0.499991 -0.866030 -0.000002 0.00115 REMARK 350 BIOMT2 11 -0.866030 -0.499991 0.000001 0.00161 REMARK 350 BIOMT3 11 -0.000002 0.000001 -1.000000 224.34529 REMARK 350 BIOMT1 12 0.936339 0.110256 -0.333336 53.81134 REMARK 350 BIOMT2 12 -0.110272 -0.809017 -0.577349 -55.71642 REMARK 350 BIOMT3 12 -0.333331 0.577352 -0.745356 281.76092 REMARK 350 BIOMT1 13 0.333340 0.934171 0.127319 141.25701 REMARK 350 BIOMT2 13 0.356821 -0.000006 -0.934173 -15.69222 REMARK 350 BIOMT3 13 -0.872676 0.356827 -0.333334 288.68247 REMARK 350 BIOMT1 14 -0.475682 0.467091 0.745354 141.49121 REMARK 350 BIOMT2 14 -0.110257 0.809017 -0.577352 64.76212 REMARK 350 BIOMT3 14 -0.872680 -0.356816 -0.333335 235.54460 REMARK 350 BIOMT1 15 -0.372685 -0.645494 0.666666 54.19029 REMARK 350 BIOMT2 15 -0.866021 0.500008 -0.000001 74.46144 REMARK 350 BIOMT3 15 -0.333337 -0.577347 -0.745357 195.78203 REMARK 350 BIOMT1 16 -0.563654 0.755766 -0.333335 295.33118 REMARK 350 BIOMT2 16 0.755766 0.309011 -0.577347 -84.16062 REMARK 350 BIOMT3 16 -0.333335 -0.577347 -0.745357 195.78176 REMARK 350 BIOMT1 17 -1.000000 0.000010 0.000000 257.94169 REMARK 350 BIOMT2 17 0.000010 1.000000 0.000003 -0.00159 REMARK 350 BIOMT3 17 0.000000 0.000003 -1.000000 224.34524 REMARK 350 BIOMT1 18 -0.563669 -0.755756 -0.333332 182.78346 REMARK 350 BIOMT2 18 -0.755756 0.309023 0.577354 -18.74368 REMARK 350 BIOMT3 18 -0.333332 0.577354 -0.745354 281.76094 REMARK 350 BIOMT1 19 0.142345 -0.467090 -0.872677 173.72261 REMARK 350 BIOMT2 19 -0.467090 -0.809013 0.356826 -114.48596 REMARK 350 BIOMT3 19 -0.872677 0.356826 -0.333332 288.68233 REMARK 350 BIOMT1 20 0.142355 0.467083 -0.872679 243.28093 REMARK 350 BIOMT2 20 0.467083 -0.809021 -0.356819 -154.91585 REMARK 350 BIOMT3 20 -0.872679 -0.356819 -0.333334 235.54427 REMARK 350 BIOMT1 21 0.642355 0.755756 0.127327 88.11725 REMARK 350 BIOMT2 21 0.178405 -0.309022 0.934172 -225.26833 REMARK 350 BIOMT3 21 0.745353 -0.577354 -0.333333 10.44448 REMARK 350 BIOMT1 22 -0.166660 0.645495 0.745360 114.91991 REMARK 350 BIOMT2 22 0.645495 -0.500008 0.577346 -259.70400 REMARK 350 BIOMT3 22 0.745360 0.577346 -0.333332 96.42349 REMARK 350 BIOMT1 23 -0.333330 -0.356822 0.872679 47.50038 REMARK 350 BIOMT2 23 0.934174 -0.000005 0.356817 -234.96717 REMARK 350 BIOMT3 23 -0.127316 0.934173 0.333335 160.76077 REMARK 350 BIOMT1 24 0.372677 -0.866025 0.333335 -20.96984 REMARK 350 BIOMT2 24 0.645499 0.500000 0.577348 -185.24330 REMARK 350 BIOMT3 24 -0.666666 0.000003 0.745357 114.54438 REMARK 350 BIOMT1 25 0.975684 -0.178414 -0.127318 4.13277 REMARK 350 BIOMT2 25 0.178408 0.309017 0.934173 -179.24909 REMARK 350 BIOMT3 25 -0.127326 -0.934172 0.333333 21.64380 REMARK 350 BIOMT1 26 -0.475685 -0.467081 0.745358 71.93192 REMARK 350 BIOMT2 26 0.110272 0.809017 0.577348 -93.20512 REMARK 350 BIOMT3 26 -0.872676 0.356828 -0.333332 288.68238 REMARK 350 BIOMT1 27 0.333327 -0.934174 0.127325 2.13936 REMARK 350 BIOMT2 27 -0.356822 0.000006 0.934172 -133.22934 REMARK 350 BIOMT3 27 -0.872680 -0.356817 -0.333332 235.54435 REMARK 350 BIOMT1 28 0.936339 -0.110272 -0.333331 37.39001 REMARK 350 BIOMT2 28 0.110256 -0.809017 0.577352 -213.68373 REMARK 350 BIOMT3 28 -0.333336 -0.577349 -0.745356 195.78163 REMARK 350 BIOMT1 29 0.500009 0.866020 0.000001 128.96866 REMARK 350 BIOMT2 29 0.866020 -0.500009 0.000001 -223.38305 REMARK 350 BIOMT3 29 0.000001 0.000001 -1.000000 224.34495 REMARK 350 BIOMT1 30 -0.372670 0.645501 0.666667 150.31673 REMARK 350 BIOMT2 30 0.866030 0.499992 -0.000002 -148.92318 REMARK 350 BIOMT3 30 -0.333329 0.577354 -0.745355 281.76077 REMARK 350 BIOMT1 31 -0.333336 -0.934171 -0.127328 116.68453 REMARK 350 BIOMT2 31 0.356822 0.000005 -0.934172 -15.69160 REMARK 350 BIOMT3 31 0.872677 -0.356827 0.333331 -64.33728 REMARK 350 BIOMT1 32 0.475681 -0.467083 -0.745360 116.45112 REMARK 350 BIOMT2 32 -0.110264 0.809020 -0.577346 64.76259 REMARK 350 BIOMT3 32 0.872680 0.356819 0.333333 -11.19918 REMARK 350 BIOMT1 33 0.372677 0.645499 -0.666666 203.75213 REMARK 350 BIOMT2 33 -0.866025 0.500000 0.000003 74.46094 REMARK 350 BIOMT3 33 0.333335 0.577348 0.745357 28.56342 REMARK 350 BIOMT1 34 -0.500000 0.866025 0.000002 257.94054 REMARK 350 BIOMT2 34 -0.866025 -0.500000 -0.000002 0.00065 REMARK 350 BIOMT3 34 -0.000001 -0.000002 1.000000 -0.00005 REMARK 350 BIOMT1 35 -0.936340 -0.110264 0.333331 204.12980 REMARK 350 BIOMT2 35 -0.110264 -0.809014 -0.577354 -55.71668 REMARK 350 BIOMT3 35 0.333331 -0.577354 0.745354 -57.41584 REMARK 350 BIOMT1 36 0.166666 0.645495 -0.745358 239.14822 REMARK 350 BIOMT2 36 -0.645500 -0.500000 -0.577348 36.32165 REMARK 350 BIOMT3 36 -0.745354 0.577353 0.333334 213.90048 REMARK 350 BIOMT1 37 -0.642348 0.755763 -0.127325 282.37153 REMARK 350 BIOMT2 37 -0.178409 -0.309018 -0.934173 30.32735 REMARK 350 BIOMT3 37 -0.745359 -0.577348 0.333331 127.92139 REMARK 350 BIOMT1 38 -0.975685 -0.178405 0.127317 227.23940 REMARK 350 BIOMT2 38 -0.178405 0.309021 -0.934172 76.34656 REMARK 350 BIOMT3 38 0.127317 -0.934172 -0.333336 63.58424 REMARK 350 BIOMT1 39 -0.372685 -0.866021 -0.333337 149.94256 REMARK 350 BIOMT2 39 -0.645494 0.500008 -0.577347 110.78229 REMARK 350 BIOMT3 39 0.666666 -0.000001 -0.745357 109.80077 REMARK 350 BIOMT1 40 0.333327 -0.356822 -0.872680 157.30262 REMARK 350 BIOMT2 40 -0.934174 0.000006 -0.356817 86.04554 REMARK 350 BIOMT3 40 0.127325 0.934172 -0.333332 202.70132 REMARK 350 BIOMT1 41 0.642355 0.178405 0.745353 -24.19829 REMARK 350 BIOMT2 41 0.755756 -0.309022 -0.577354 -130.17790 REMARK 350 BIOMT3 41 0.127327 0.934172 -0.333333 202.70105 REMARK 350 BIOMT1 42 0.475687 0.110265 0.872676 -22.05895 REMARK 350 BIOMT2 42 0.467089 0.809014 -0.356826 -34.43561 REMARK 350 BIOMT3 42 -0.745353 0.577355 0.333334 213.90043 REMARK 350 BIOMT1 43 0.475681 -0.110264 0.872680 -38.47930 REMARK 350 BIOMT2 43 -0.467083 0.809020 0.356819 5.99422 REMARK 350 BIOMT3 43 -0.745360 -0.577346 0.333333 127.92142 REMARK 350 BIOMT1 44 0.642346 -0.178417 0.745358 -50.76698 REMARK 350 BIOMT2 44 -0.755766 -0.309012 0.577347 -64.76107 REMARK 350 BIOMT3 44 0.127316 -0.934173 -0.333334 63.58409 REMARK 350 BIOMT1 45 0.745356 -0.000010 0.666666 -41.94083 REMARK 350 BIOMT2 45 -0.000010 -1.000000 -0.000004 -148.92006 REMARK 350 BIOMT3 45 0.666666 -0.000004 -0.745356 109.80045 REMARK 350 BIOMT1 46 -0.333336 0.356822 0.872677 100.63992 REMARK 350 BIOMT2 46 -0.934171 0.000005 -0.356827 86.04607 REMARK 350 BIOMT3 46 -0.127328 -0.934172 0.333331 21.64416 REMARK 350 BIOMT1 47 -0.166673 -0.645500 0.745352 18.79383 REMARK 350 BIOMT2 47 -0.645500 -0.499992 -0.577354 36.32302 REMARK 350 BIOMT3 47 0.745352 -0.577354 -0.333335 10.44486 REMARK 350 BIOMT1 48 0.642346 -0.755766 0.127316 -24.42954 REMARK 350 BIOMT2 48 -0.178417 -0.309012 -0.934173 30.32891 REMARK 350 BIOMT3 48 0.745358 0.577347 -0.333334 96.42393 REMARK 350 BIOMT1 49 0.975684 0.178408 -0.127326 30.70305 REMARK 350 BIOMT2 49 -0.178414 0.309017 -0.934172 76.34739 REMARK 350 BIOMT3 49 -0.127318 0.934173 0.333333 160.76122 REMARK 350 BIOMT1 50 0.372679 0.866026 0.333332 108.00022 REMARK 350 BIOMT2 50 -0.645496 0.500000 -0.577352 110.78249 REMARK 350 BIOMT3 50 -0.666668 0.000003 0.745355 114.54478 REMARK 350 BIOMT1 51 0.166666 -0.645500 -0.745354 143.01922 REMARK 350 BIOMT2 51 0.645495 -0.500000 0.577353 -259.70419 REMARK 350 BIOMT3 51 -0.745358 -0.577348 0.333334 127.92101 REMARK 350 BIOMT1 52 0.333340 0.356822 -0.872676 210.43900 REMARK 350 BIOMT2 52 0.934171 -0.000006 0.356827 -234.96784 REMARK 350 BIOMT3 52 0.127319 -0.934173 -0.333334 63.58380 REMARK 350 BIOMT1 53 -0.372670 0.866030 -0.333329 278.90970 REMARK 350 BIOMT2 53 0.645501 0.499992 0.577354 -185.24477 REMARK 350 BIOMT3 53 0.666668 -0.000002 -0.745355 109.80033 REMARK 350 BIOMT1 54 -0.975682 0.178417 0.127327 253.80716 REMARK 350 BIOMT2 54 0.178417 0.309013 0.934173 -179.25057 REMARK 350 BIOMT3 54 0.127327 0.934173 -0.333331 202.70093 REMARK 350 BIOMT1 55 -0.642353 -0.755759 -0.127318 169.82222 REMARK 350 BIOMT2 55 0.178414 -0.309016 0.934172 -225.26902 REMARK 350 BIOMT3 55 -0.745353 0.577353 0.333336 213.90012 REMARK 350 BIOMT1 56 -0.475685 0.110272 -0.872676 296.42106 REMARK 350 BIOMT2 56 -0.467081 0.809017 0.356828 5.99261 REMARK 350 BIOMT3 56 0.745358 0.577348 -0.333332 96.42383 REMARK 350 BIOMT1 57 -0.642353 0.178414 -0.745353 308.70804 REMARK 350 BIOMT2 57 -0.755759 -0.309016 0.577353 -64.76298 REMARK 350 BIOMT3 57 -0.127318 0.934172 0.333336 160.76096 REMARK 350 BIOMT1 58 -0.745356 0.000000 -0.666666 299.88105 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000001 -148.92176 REMARK 350 BIOMT3 58 -0.666666 0.000001 0.745356 114.54437 REMARK 350 BIOMT1 59 -0.642348 -0.178409 -0.745359 282.13869 REMARK 350 BIOMT2 59 0.755763 -0.309018 -0.577348 -130.17916 REMARK 350 BIOMT3 59 -0.127325 -0.934173 0.333331 21.64382 REMARK 350 BIOMT1 60 -0.475682 -0.110257 -0.872680 280.00030 REMARK 350 BIOMT2 60 0.467091 0.809017 -0.356816 -34.43681 REMARK 350 BIOMT3 60 0.745354 -0.577352 -0.333335 10.44471 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE VIRUS CAPSID IS FROM AAV8 VIRUS BUT THE GENE ENCAPSULATED BY REMARK 400 THE VIRUS WAS GFP. THE GENE CODING FOR GFP WAS NOT OBSERVED IN THE REMARK 400 ELECTRON DENSITY MAP IN THIS STRUCTURE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RAA RELATED DB: PDB REMARK 900 RELATED ID: 3RA4 RELATED DB: PDB REMARK 900 RELATED ID: 3RA8 RELATED DB: PDB REMARK 900 RELATED ID: 3RA9 RELATED DB: PDB DBREF 3RA2 A 220 738 UNP Q8JQF8 Q8JQF8_9VIRU 220 738 SEQRES 1 A 519 ASP GLY VAL GLY SER SER SER GLY ASN TRP HIS CYS ASP SEQRES 2 A 519 SER THR TRP LEU GLY ASP ARG VAL ILE THR THR SER THR SEQRES 3 A 519 ARG THR TRP ALA LEU PRO THR TYR ASN ASN HIS LEU TYR SEQRES 4 A 519 LYS GLN ILE SER ASN GLY THR SER GLY GLY ALA THR ASN SEQRES 5 A 519 ASP ASN THR TYR PHE GLY TYR SER THR PRO TRP GLY TYR SEQRES 6 A 519 PHE ASP PHE ASN ARG PHE HIS CYS HIS PHE SER PRO ARG SEQRES 7 A 519 ASP TRP GLN ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG SEQRES 8 A 519 PRO LYS ARG LEU SER PHE LYS LEU PHE ASN ILE GLN VAL SEQRES 9 A 519 LYS GLU VAL THR GLN ASN GLU GLY THR LYS THR ILE ALA SEQRES 10 A 519 ASN ASN LEU THR SER THR ILE GLN VAL PHE THR ASP SER SEQRES 11 A 519 GLU TYR GLN LEU PRO TYR VAL LEU GLY SER ALA HIS GLN SEQRES 12 A 519 GLY CYS LEU PRO PRO PHE PRO ALA ASP VAL PHE MET ILE SEQRES 13 A 519 PRO GLN TYR GLY TYR LEU THR LEU ASN ASN GLY SER GLN SEQRES 14 A 519 ALA VAL GLY ARG SER SER PHE TYR CYS LEU GLU TYR PHE SEQRES 15 A 519 PRO SER GLN MET LEU ARG THR GLY ASN ASN PHE GLN PHE SEQRES 16 A 519 THR TYR THR PHE GLU ASP VAL PRO PHE HIS SER SER TYR SEQRES 17 A 519 ALA HIS SER GLN SER LEU ASP ARG LEU MET ASN PRO LEU SEQRES 18 A 519 ILE ASP GLN TYR LEU TYR TYR LEU SER ARG THR GLN THR SEQRES 19 A 519 THR GLY GLY THR ALA ASN THR GLN THR LEU GLY PHE SER SEQRES 20 A 519 GLN GLY GLY PRO ASN THR MET ALA ASN GLN ALA LYS ASN SEQRES 21 A 519 TRP LEU PRO GLY PRO CYS TYR ARG GLN GLN ARG VAL SER SEQRES 22 A 519 THR THR THR GLY GLN ASN ASN ASN SER ASN PHE ALA TRP SEQRES 23 A 519 THR ALA GLY THR LYS TYR HIS LEU ASN GLY ARG ASN SER SEQRES 24 A 519 LEU ALA ASN PRO GLY ILE ALA MET ALA THR HIS LYS ASP SEQRES 25 A 519 ASP GLU GLU ARG PHE PHE PRO SER ASN GLY ILE LEU ILE SEQRES 26 A 519 PHE GLY LYS GLN ASN ALA ALA ARG ASP ASN ALA ASP TYR SEQRES 27 A 519 SER ASP VAL MET LEU THR SER GLU GLU GLU ILE LYS THR SEQRES 28 A 519 THR ASN PRO VAL ALA THR GLU GLU TYR GLY ILE VAL ALA SEQRES 29 A 519 ASP ASN LEU GLN GLN GLN ASN THR ALA PRO GLN ILE GLY SEQRES 30 A 519 THR VAL ASN SER GLN GLY ALA LEU PRO GLY MET VAL TRP SEQRES 31 A 519 GLN ASN ARG ASP VAL TYR LEU GLN GLY PRO ILE TRP ALA SEQRES 32 A 519 LYS ILE PRO HIS THR ASP GLY ASN PHE HIS PRO SER PRO SEQRES 33 A 519 LEU MET GLY GLY PHE GLY LEU LYS HIS PRO PRO PRO GLN SEQRES 34 A 519 ILE LEU ILE LYS ASN THR PRO VAL PRO ALA ASP PRO PRO SEQRES 35 A 519 THR THR PHE ASN GLN SER LYS LEU ASN SER PHE ILE THR SEQRES 36 A 519 GLN TYR SER THR GLY GLN VAL SER VAL GLU ILE GLU TRP SEQRES 37 A 519 GLU LEU GLN LYS GLU ASN SER LYS ARG TRP ASN PRO GLU SEQRES 38 A 519 ILE GLN TYR THR SER ASN TYR TYR LYS SER THR SER VAL SEQRES 39 A 519 ASP PHE ALA VAL ASN THR GLU GLY VAL TYR SER GLU PRO SEQRES 40 A 519 ARG PRO ILE GLY THR ARG TYR LEU THR ARG ASN LEU FORMUL 2 HOH *87(H2 O) HELIX 1 1 TYR A 253 LEU A 257 5 5 HELIX 2 2 THR A 270 THR A 274 5 5 HELIX 3 3 ARG A 289 HIS A 293 5 5 HELIX 4 4 SER A 295 ASN A 305 1 11 HELIX 5 5 CYS A 397 PHE A 401 5 5 HELIX 6 6 SER A 432 LEU A 436 5 5 HELIX 7 7 GLY A 469 GLN A 476 5 8 HELIX 8 8 THR A 494 ASN A 498 5 5 HELIX 9 9 ASP A 556 SER A 558 5 3 HELIX 10 10 GLU A 565 LYS A 569 5 5 SHEET 1 A 5 ASP A 232 LEU A 236 0 SHEET 2 A 5 ARG A 239 LEU A 250 -1 O ILE A 241 N THR A 234 SHEET 3 A 5 GLN A 675 LYS A 691 -1 O TRP A 687 N VAL A 240 SHEET 4 A 5 ASN A 306 ASN A 329 -1 N LYS A 312 O GLU A 686 SHEET 5 A 5 HIS A 424 SER A 425 -1 O HIS A 424 N PHE A 309 SHEET 1 B 5 VAL A 372 MET A 374 0 SHEET 2 B 5 ARG A 239 LEU A 250 1 N THR A 247 O PHE A 373 SHEET 3 B 5 GLN A 675 LYS A 691 -1 O TRP A 687 N VAL A 240 SHEET 4 B 5 ASN A 306 ASN A 329 -1 N LYS A 312 O GLU A 686 SHEET 5 B 5 PHE A 412 THR A 417 -1 O TYR A 416 N LEU A 314 SHEET 1 C 5 ASP A 232 LEU A 236 0 SHEET 2 C 5 ARG A 239 LEU A 250 -1 O ILE A 241 N THR A 234 SHEET 3 C 5 GLN A 675 LYS A 691 -1 O TRP A 687 N VAL A 240 SHEET 4 C 5 ASN A 306 ASN A 329 -1 N LYS A 312 O GLU A 686 SHEET 5 C 5 THR A 332 ASN A 337 -1 O ALA A 336 N GLU A 325 SHEET 1 D 3 LYS A 259 ASN A 263 0 SHEET 2 D 3 TYR A 275 PHE A 285 -1 O GLY A 277 N ILE A 261 SHEET 3 D 3 GLN A 377 THR A 382 -1 O THR A 382 N PHE A 276 SHEET 1 E 5 LYS A 259 ASN A 263 0 SHEET 2 E 5 TYR A 275 PHE A 285 -1 O GLY A 277 N ILE A 261 SHEET 3 E 5 ILE A 649 ASN A 653 -1 O ILE A 651 N GLY A 283 SHEET 4 E 5 ILE A 343 THR A 347 -1 N GLN A 344 O LYS A 652 SHEET 5 E 5 GLN A 404 LEU A 406 -1 O LEU A 406 N ILE A 343 SHEET 1 F 2 ALA A 428 HIS A 429 0 SHEET 2 F 2 THR A 735 ARG A 736 1 O ARG A 736 N ALA A 428 SHEET 1 G 2 TYR A 446 GLN A 452 0 SHEET 2 G 2 GLN A 461 GLN A 467 -1 O GLY A 464 N SER A 449 SHEET 1 H 2 CYS A 485 TYR A 486 0 SHEET 2 H 2 SER A 600 GLN A 601 -1 O GLN A 601 N CYS A 485 SHEET 1 I 2 ARG A 490 SER A 492 0 SHEET 2 I 2 PHE A 536 PRO A 538 -1 O PHE A 537 N VAL A 491 SHEET 1 J 2 LYS A 510 LEU A 513 0 SHEET 2 J 2 ARG A 516 LEU A 519 -1 O ARG A 516 N LEU A 513 SHEET 1 K 2 ILE A 544 GLY A 546 0 SHEET 2 K 2 VAL A 560 LEU A 562 -1 O MET A 561 N PHE A 545 SHEET 1 L 2 GLY A 580 ALA A 583 0 SHEET 2 L 2 ILE A 595 VAL A 598 -1 O GLY A 596 N VAL A 582 SHEET 1 M 2 TRP A 621 LYS A 623 0 SHEET 2 M 2 PHE A 640 LEU A 642 1 O LEU A 642 N ALA A 622 CISPEP 1 ASN A 521 PRO A 522 0 0.98 CRYST1 257.940 257.940 448.690 90.00 90.00 120.00 P 63 2 2 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003877 0.002238 0.000000 0.00000 SCALE2 0.000000 0.004477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002229 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.563020 0.754750 0.336680 74.90980 MTRIX2 2 -0.756080 0.305910 0.578590 -18.89070 MTRIX3 2 0.333690 -0.580320 0.742880 -57.63220 MTRIX1 3 -0.140740 0.462130 0.875570 83.44090 MTRIX2 3 -0.468580 -0.810140 0.352280 -114.03710 MTRIX3 3 0.872140 -0.360690 0.330570 -64.67310 MTRIX1 4 -0.145110 -0.470220 0.870540 15.21300 MTRIX2 4 0.466720 -0.808340 -0.358830 -154.60001 MTRIX3 4 0.872420 0.354220 0.336760 -11.78600 MTRIX1 5 0.561780 -0.758440 0.330400 -36.93000 MTRIX2 5 0.756880 0.309970 -0.575370 -84.21600 MTRIX3 5 0.333970 0.573310 0.748190 27.75300 MTRIX1 6 0.642740 0.755080 0.129370 87.98500 MTRIX2 6 0.179550 -0.312650 0.932750 -225.60001 MTRIX3 6 0.744750 -0.576280 -0.336520 10.97500 MTRIX1 7 -0.167360 0.641720 0.748460 114.40440 MTRIX2 7 0.643740 -0.503860 0.575950 -259.40659 MTRIX3 7 0.746720 0.578210 -0.328770 95.93890 MTRIX1 8 -0.333350 -0.363120 0.870070 47.01590 MTRIX2 8 0.934120 -0.002230 0.356960 -234.80569 MTRIX3 8 -0.127680 0.931740 0.339940 159.97830 MTRIX1 9 0.370660 -0.868330 0.329570 -20.61900 MTRIX2 9 0.645610 0.495990 0.580680 -185.83000 MTRIX3 9 -0.667680 -0.002460 0.744440 114.31000 MTRIX1 10 0.975840 -0.177420 -0.127550 4.31950 MTRIX2 10 0.177540 0.303470 0.936160 -179.77000 MTRIX3 10 -0.127380 -0.936180 0.327630 21.99500