HEADER TRANSCRIPTION 28-MAR-11 3RAY TITLE CRYSTAL STRUCTURE OF METHYLTRANSFERASE DOMAIN OF HUMAN PR DOMAIN- TITLE 2 CONTAINING PROTEIN 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PR DOMAIN-CONTAINING PROTEIN 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 79-314; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRDM11, PFM8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)V2RPRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, HISTONE METHYLATION, ZN-FINGER, KEYWDS 2 TRANSCRIPTIONAL REGULATION, CHROMATIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,P.LOPPNAU,J.R.WALKER,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 3 13-SEP-23 3RAY 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3RAY 1 REMARK REVDAT 1 20-APR-11 3RAY 0 JRNL AUTH A.DONG,H.ZENG,P.LOPPNAU,J.R.WALKER,C.BOUNTRA,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,H.WU, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF METHYLTRANSFERASE DOMAIN OF HUMAN PR JRNL TITL 2 DOMAIN-CONTAINING PROTEIN 11 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2690 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2280 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2525 REMARK 3 BIN R VALUE (WORKING SET) : 0.2264 REMARK 3 BIN FREE R VALUE : 0.2532 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 165 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1266 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.54020 REMARK 3 B22 (A**2) : 1.53870 REMARK 3 B33 (A**2) : -8.07890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.247 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1358 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1855 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 456 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 34 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 203 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1358 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 171 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1623 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.40 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 26.5547 31.1919 13.9838 REMARK 3 T TENSOR REMARK 3 T11: -0.1451 T22: -0.1225 REMARK 3 T33: -0.0716 T12: 0.0164 REMARK 3 T13: -0.0080 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.6009 L22: 3.4138 REMARK 3 L33: 2.5324 L12: 0.2641 REMARK 3 L13: -0.1296 L23: 0.1599 REMARK 3 S TENSOR REMARK 3 S11: 0.0819 S12: 0.0285 S13: 0.0900 REMARK 3 S21: -0.1276 S22: -0.0254 S23: 0.2014 REMARK 3 S31: 0.0890 S32: 0.0037 S33: -0.0565 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERIMAX HR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : 0.03600 REMARK 200 FOR THE DATA SET : 59.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : 0.67800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3DB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%PEG 3350, 0.2M KCL , VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.57700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.14150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.57800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.14150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.57700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.57800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 MET A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 LEU A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 LYS A 15 REMARK 465 ARG A 16 REMARK 465 ASP A 17 REMARK 465 LEU A 18 REMARK 465 ILE A 19 REMARK 465 VAL A 20 REMARK 465 PRO A 21 REMARK 465 LYS A 22 REMARK 465 SER A 23 REMARK 465 PHE A 24 REMARK 465 GLN A 25 REMARK 465 GLN A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 109 REMARK 465 LYS A 110 REMARK 465 SER A 111 REMARK 465 ALA A 112 REMARK 465 GLY A 113 REMARK 465 MET A 192 REMARK 465 SER A 193 REMARK 465 GLN A 194 REMARK 465 GLU A 195 REMARK 465 THR A 196 REMARK 465 ILE A 197 REMARK 465 HIS A 198 REMARK 465 ARG A 199 REMARK 465 ASN A 200 REMARK 465 LEU A 201 REMARK 465 ALA A 202 REMARK 465 ARG A 203 REMARK 465 GLY A 204 REMARK 465 GLU A 205 REMARK 465 LYS A 206 REMARK 465 ARG A 207 REMARK 465 LEU A 208 REMARK 465 GLN A 209 REMARK 465 ARG A 210 REMARK 465 GLU A 211 REMARK 465 LYS A 212 REMARK 465 SER A 213 REMARK 465 GLU A 214 REMARK 465 GLN A 215 REMARK 465 VAL A 216 REMARK 465 LEU A 217 REMARK 465 ASP A 218 REMARK 465 ASN A 219 REMARK 465 PRO A 220 REMARK 465 GLU A 221 REMARK 465 ASP A 222 REMARK 465 LEU A 223 REMARK 465 ARG A 224 REMARK 465 GLY A 225 REMARK 465 PRO A 226 REMARK 465 ILE A 227 REMARK 465 HIS A 228 REMARK 465 LEU A 229 REMARK 465 SER A 230 REMARK 465 VAL A 231 REMARK 465 LEU A 232 REMARK 465 ARG A 233 REMARK 465 GLN A 234 REMARK 465 GLY A 235 REMARK 465 LYS A 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 29 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 40 CG1 CG2 REMARK 470 ASN A 45 CG OD1 ND2 REMARK 470 GLN A 108 CG CD OE1 NE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 ASN A 123 CG OD1 ND2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 ARG A 150 CD NE CZ NH1 NH2 REMARK 470 ARG A 172 NH1 NH2 REMARK 470 LYS A 187 CD CE NZ REMARK 470 SER A 191 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 240 UNK UNX A 241 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 -10.67 -149.06 REMARK 500 ASN A 89 -61.73 77.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 32 SG REMARK 620 2 CYS A 35 SG 120.4 REMARK 620 3 CYS A 43 SG 110.7 119.8 REMARK 620 4 HIS A 46 ND1 93.5 88.5 119.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 72 O REMARK 620 2 VAL A 88 O 64.0 REMARK 620 3 GLU A 90 O 129.8 82.5 REMARK 620 4 HOH A 306 O 108.1 87.5 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 83 O REMARK 620 2 TYR A 142 O 90.4 REMARK 620 3 HOH A 287 O 167.1 77.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1003 DBREF 3RAY A 1 236 UNP Q9NQV5 PRD11_HUMAN 79 314 SEQADV 3RAY GLY A 0 UNP Q9NQV5 EXPRESSION TAG SEQRES 1 A 237 GLY ASP SER SER ALA MET GLU VAL GLU PRO LYS LYS LEU SEQRES 2 A 237 LYS GLY LYS ARG ASP LEU ILE VAL PRO LYS SER PHE GLN SEQRES 3 A 237 GLN VAL ASP PHE TRP PHE CYS GLU SER CYS GLN GLU TYR SEQRES 4 A 237 PHE VAL ASP GLU CYS PRO ASN HIS GLY PRO PRO VAL PHE SEQRES 5 A 237 VAL SER ASP THR PRO VAL PRO VAL GLY ILE PRO ASP ARG SEQRES 6 A 237 ALA ALA LEU THR ILE PRO GLN GLY MET GLU VAL VAL LYS SEQRES 7 A 237 ASP THR SER GLY GLU SER ASP VAL ARG CYS VAL ASN GLU SEQRES 8 A 237 VAL ILE PRO LYS GLY HIS ILE PHE GLY PRO TYR GLU GLY SEQRES 9 A 237 GLN ILE SER THR GLN ASP LYS SER ALA GLY PHE PHE SER SEQRES 10 A 237 TRP LEU ILE VAL ASP LYS ASN ASN ARG TYR LYS SER ILE SEQRES 11 A 237 ASP GLY SER ASP GLU THR LYS ALA ASN TRP MET ARG TYR SEQRES 12 A 237 VAL VAL ILE SER ARG GLU GLU ARG GLU GLN ASN LEU LEU SEQRES 13 A 237 ALA PHE GLN HIS SER GLU ARG ILE TYR PHE ARG ALA CYS SEQRES 14 A 237 ARG ASP ILE ARG PRO GLY GLU TRP LEU ARG VAL TRP TYR SEQRES 15 A 237 SER GLU ASP TYR MET LYS ARG LEU HIS SER MET SER GLN SEQRES 16 A 237 GLU THR ILE HIS ARG ASN LEU ALA ARG GLY GLU LYS ARG SEQRES 17 A 237 LEU GLN ARG GLU LYS SER GLU GLN VAL LEU ASP ASN PRO SEQRES 18 A 237 GLU ASP LEU ARG GLY PRO ILE HIS LEU SER VAL LEU ARG SEQRES 19 A 237 GLN GLY LYS HET ZN A1000 1 HET CL A1001 1 HET NA A1002 1 HET NA A1003 1 HET UNX A 237 1 HET UNX A 238 1 HET UNX A 239 1 HET UNX A 240 1 HET UNX A 241 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 NA 2(NA 1+) FORMUL 6 UNX 5(X) FORMUL 11 HOH *119(H2 O) HELIX 1 1 ASP A 63 THR A 68 1 6 HELIX 2 2 ASN A 138 VAL A 143 5 6 HELIX 3 3 SER A 182 HIS A 190 1 9 SHEET 1 A 2 TRP A 30 CYS A 32 0 SHEET 2 A 2 GLU A 37 PHE A 39 -1 O GLU A 37 N CYS A 32 SHEET 1 B 6 VAL A 50 VAL A 52 0 SHEET 2 B 6 HIS A 96 PHE A 98 1 O ILE A 97 N VAL A 52 SHEET 3 B 6 ARG A 162 ALA A 167 -1 O PHE A 165 N PHE A 98 SHEET 4 B 6 LEU A 154 HIS A 159 -1 N PHE A 157 O TYR A 164 SHEET 5 B 6 ARG A 178 TYR A 181 1 O TRP A 180 N ALA A 156 SHEET 6 B 6 VAL A 144 ILE A 145 1 N VAL A 144 O VAL A 179 SHEET 1 C 2 MET A 73 LYS A 77 0 SHEET 2 C 2 SER A 83 CYS A 87 -1 O ASP A 84 N VAL A 76 SHEET 1 D 3 GLN A 104 SER A 106 0 SHEET 2 D 3 TYR A 126 ASP A 130 -1 O ASP A 130 N GLN A 104 SHEET 3 D 3 SER A 116 VAL A 120 -1 N TRP A 117 O ILE A 129 LINK SG CYS A 32 ZN ZN A1000 1555 1555 2.43 LINK SG CYS A 35 ZN ZN A1000 1555 1555 2.47 LINK SG CYS A 43 ZN ZN A1000 1555 1555 2.26 LINK ND1 HIS A 46 ZN ZN A1000 1555 1555 2.39 LINK O GLY A 72 NA NA A1002 1555 1555 2.78 LINK O SER A 83 NA NA A1003 1555 1555 2.89 LINK O VAL A 88 NA NA A1002 1555 1555 2.99 LINK O GLU A 90 NA NA A1002 1555 1555 2.69 LINK O TYR A 142 NA NA A1003 1555 1555 2.78 LINK O HOH A 287 NA NA A1003 1555 1555 3.19 LINK O HOH A 306 NA NA A1002 1555 1555 3.18 CISPEP 1 GLY A 99 PRO A 100 0 9.03 SITE 1 AC1 4 CYS A 32 CYS A 35 CYS A 43 HIS A 46 SITE 1 AC2 3 GLN A 158 TYR A 185 ARG A 188 SITE 1 AC3 4 GLY A 72 CYS A 87 VAL A 88 GLU A 90 SITE 1 AC4 2 SER A 83 TYR A 142 CRYST1 31.154 55.156 106.283 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009409 0.00000