HEADER HYDROLASE 29-MAR-11 3RBJ TITLE CRYSTAL STRUCTURE OF THE LID-MUTANT OF STREPTOCOCCUS AGALACTIAE TITLE 2 SORTASE C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 43-260; COMPND 5 SYNONYM: SORTASE C1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROGROUP V; SOURCE 3 ORGANISM_TAXID: 216466; SOURCE 4 STRAIN: SAG 2603V/R; SOURCE 5 GENE: SAG0647, SRTC1 (SAG0647); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PQE30 KEYWDS SORTASE FOLD, BETA-BARREL, LID-MUTANT, SORTASE C1, PILI BIOGENESIS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.KHARE,S.V.L.NARAYANA REVDAT 4 21-FEB-24 3RBJ 1 SEQADV REVDAT 3 17-JUL-19 3RBJ 1 REMARK REVDAT 2 28-MAR-12 3RBJ 1 JRNL REVDAT 1 07-SEP-11 3RBJ 0 JRNL AUTH B.KHARE,V.KRISHNAN,K.R.RAJASHANKAR,H.I-HSIU,M.XIN, JRNL AUTH 2 H.TON-THAT,S.V.NARAYANA JRNL TITL STRUCTURAL DIFFERENCES BETWEEN THE STREPTOCOCCUS AGALACTIAE JRNL TITL 2 HOUSEKEEPING AND PILUS-SPECIFIC SORTASES: SRTA AND SRTC1. JRNL REF PLOS ONE V. 6 22995 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21912586 JRNL DOI 10.1371/JOURNAL.PONE.0022995 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 16668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 904 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.4460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2949 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 1.20000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.476 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3038 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4122 ; 1.732 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 7.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;38.725 ;24.015 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;19.737 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2279 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 0.676 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3072 ; 1.143 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 1.789 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1050 ; 2.756 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 47 6 REMARK 3 1 B 6 B 47 6 REMARK 3 2 A 60 A 207 4 REMARK 3 2 B 60 B 207 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1127 ; 0.62 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 328 ; 0.87 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1127 ; 1.14 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 328 ; 1.13 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0690 15.8560 -7.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.2917 REMARK 3 T33: 0.1858 T12: -0.0262 REMARK 3 T13: -0.0207 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 2.2084 L22: 5.8807 REMARK 3 L33: 3.6458 L12: -1.0577 REMARK 3 L13: 0.0093 L23: -1.7956 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: -0.3790 S13: -0.0468 REMARK 3 S21: 0.4509 S22: 0.1797 S23: 0.3190 REMARK 3 S31: -0.2286 S32: -0.2621 S33: -0.0931 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4500 39.1860 -33.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.2832 REMARK 3 T33: 0.2732 T12: -0.0539 REMARK 3 T13: -0.0396 T23: -0.1027 REMARK 3 L TENSOR REMARK 3 L11: 4.0270 L22: 5.2105 REMARK 3 L33: 6.5157 L12: 0.6643 REMARK 3 L13: -1.1053 L23: -2.7743 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0017 S13: 0.2052 REMARK 3 S21: 0.1677 S22: -0.1904 S23: -0.5652 REMARK 3 S31: -0.2501 S32: 0.4594 S33: 0.2100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3RBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.44 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG2000 MME, 100 MM MES, PH 6.44, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 4 REMARK 465 ILE A 48 REMARK 465 PRO A 49 REMARK 465 ASN A 50 REMARK 465 THR A 51 REMARK 465 GLY A 52 REMARK 465 ALA A 53 REMARK 465 GLU A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 GLN A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 VAL A 208 REMARK 465 GLN A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 211 REMARK 465 SER A 212 REMARK 465 LYS A 213 REMARK 465 THR A 214 REMARK 465 PHE A 215 REMARK 465 ARG A 216 REMARK 465 GLN A 217 REMARK 465 GLN A 218 REMARK 465 GLN A 219 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 LYS B 39 REMARK 465 THR B 40 REMARK 465 ASN B 41 REMARK 465 GLY B 42 REMARK 465 GLU B 43 REMARK 465 ILE B 48 REMARK 465 PRO B 49 REMARK 465 ASN B 50 REMARK 465 THR B 51 REMARK 465 GLY B 52 REMARK 465 ALA B 53 REMARK 465 GLU B 54 REMARK 465 GLN B 55 REMARK 465 LYS B 56 REMARK 465 GLN B 57 REMARK 465 ALA B 58 REMARK 465 VAL B 208 REMARK 465 GLN B 209 REMARK 465 LYS B 210 REMARK 465 ASP B 211 REMARK 465 SER B 212 REMARK 465 LYS B 213 REMARK 465 THR B 214 REMARK 465 PHE B 215 REMARK 465 ARG B 216 REMARK 465 GLN B 217 REMARK 465 GLN B 218 REMARK 465 GLN B 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 HIS B 122 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 125 CG CD1 CD2 REMARK 470 PRO B 126 CG CD REMARK 470 PHE B 131 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 63 CD1 TYR A 63 CE1 -0.099 REMARK 500 TYR A 63 CE2 TYR A 63 CD2 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 45 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO B 126 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 ALA B 184 CB - CA - C ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 -3.83 76.07 REMARK 500 SER A 91 39.38 -97.85 REMARK 500 ALA A 121 172.03 176.51 REMARK 500 ARG A 123 58.10 -90.83 REMARK 500 LEU A 130 -135.11 45.31 REMARK 500 PHE A 131 46.67 -87.87 REMARK 500 THR A 185 157.03 176.69 REMARK 500 MET A 188 -5.07 80.30 REMARK 500 LYS B 70 46.73 36.83 REMARK 500 SER B 91 83.03 -151.29 REMARK 500 LYS B 129 36.45 -79.07 REMARK 500 LEU B 181 79.33 -101.53 REMARK 500 THR B 185 156.21 177.94 REMARK 500 GLU B 205 14.81 -65.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RBI RELATED DB: PDB REMARK 900 THE TYPE III CRYSTAL STRUCTURE OF STREPTOCOCCUS AGALACTIAE SORTASE REMARK 900 C1 REMARK 900 RELATED ID: 3RBK RELATED DB: PDB REMARK 900 THE TYPE II CRYSTAL STRUCTURE OF STREPTOCOCCUS AGALACTIAE SORTASE C1 REMARK 900 RELATED ID: 3RCC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE STREPTOCOCCUS AGALACTIAE SORTASE A DBREF 3RBJ A 2 219 UNP Q8E0S7 Q8E0S7_STRA5 43 260 DBREF 3RBJ B 2 219 UNP Q8E0S7 Q8E0S7_STRA5 43 260 SEQADV 3RBJ MET A -10 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ ARG A -9 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ GLY A -8 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ SER A -7 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS A -6 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS A -5 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS A -4 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS A -3 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS A -2 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS A -1 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ GLY A 0 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ SER A 1 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ ILE A 48 UNP Q8E0S7 LYS 89 ENGINEERED MUTATION SEQADV 3RBJ PRO A 49 UNP Q8E0S7 ASP 90 ENGINEERED MUTATION SEQADV 3RBJ ASN A 50 UNP Q8E0S7 PRO 91 ENGINEERED MUTATION SEQADV 3RBJ THR A 51 UNP Q8E0S7 TYR 92 ENGINEERED MUTATION SEQADV 3RBJ GLY A 52 UNP Q8E0S7 SER 93 ENGINEERED MUTATION SEQADV 3RBJ ALA A 184 UNP Q8E0S7 CYS 225 ENGINEERED MUTATION SEQADV 3RBJ MET B -10 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ ARG B -9 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ GLY B -8 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ SER B -7 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS B -6 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS B -5 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS B -4 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS B -3 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS B -2 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ HIS B -1 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ GLY B 0 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ SER B 1 UNP Q8E0S7 EXPRESSION TAG SEQADV 3RBJ ILE B 48 UNP Q8E0S7 LYS 89 ENGINEERED MUTATION SEQADV 3RBJ PRO B 49 UNP Q8E0S7 ASP 90 ENGINEERED MUTATION SEQADV 3RBJ ASN B 50 UNP Q8E0S7 PRO 91 ENGINEERED MUTATION SEQADV 3RBJ THR B 51 UNP Q8E0S7 TYR 92 ENGINEERED MUTATION SEQADV 3RBJ GLY B 52 UNP Q8E0S7 SER 93 ENGINEERED MUTATION SEQADV 3RBJ ALA B 184 UNP Q8E0S7 CYS 225 ENGINEERED MUTATION SEQRES 1 A 230 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 230 HIS ALA ASN ILE ASN ALA PHE LYS GLU ALA VAL THR LYS SEQRES 3 A 230 ILE ASP ARG VAL GLU ILE ASN ARG ARG LEU GLU LEU ALA SEQRES 4 A 230 TYR ALA TYR ASN ALA SER ILE ALA GLY ALA LYS THR ASN SEQRES 5 A 230 GLY GLU TYR PRO ALA LEU ILE PRO ASN THR GLY ALA GLU SEQRES 6 A 230 GLN LYS GLN ALA GLY VAL VAL GLU TYR ALA ARG MET LEU SEQRES 7 A 230 GLU VAL LYS GLU GLN ILE GLY HIS VAL ILE ILE PRO ARG SEQRES 8 A 230 ILE ASN GLN ASP ILE PRO ILE TYR ALA GLY SER ALA GLU SEQRES 9 A 230 GLU ASN LEU GLN ARG GLY VAL GLY HIS LEU GLU GLY THR SEQRES 10 A 230 SER LEU PRO VAL GLY GLY GLU SER THR HIS ALA VAL LEU SEQRES 11 A 230 THR ALA HIS ARG GLY LEU PRO THR ALA LYS LEU PHE THR SEQRES 12 A 230 ASN LEU ASP LYS VAL THR VAL GLY ASP ARG PHE TYR ILE SEQRES 13 A 230 GLU HIS ILE GLY GLY LYS ILE ALA TYR GLN VAL ASP GLN SEQRES 14 A 230 ILE LYS VAL ILE ALA PRO ASP GLN LEU GLU ASP LEU TYR SEQRES 15 A 230 VAL ILE GLN GLY GLU ASP HIS VAL THR LEU LEU THR ALA SEQRES 16 A 230 THR PRO TYR MET ILE ASN SER HIS ARG LEU LEU VAL ARG SEQRES 17 A 230 GLY LYS ARG ILE PRO TYR VAL GLU LYS THR VAL GLN LYS SEQRES 18 A 230 ASP SER LYS THR PHE ARG GLN GLN GLN SEQRES 1 B 230 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 230 HIS ALA ASN ILE ASN ALA PHE LYS GLU ALA VAL THR LYS SEQRES 3 B 230 ILE ASP ARG VAL GLU ILE ASN ARG ARG LEU GLU LEU ALA SEQRES 4 B 230 TYR ALA TYR ASN ALA SER ILE ALA GLY ALA LYS THR ASN SEQRES 5 B 230 GLY GLU TYR PRO ALA LEU ILE PRO ASN THR GLY ALA GLU SEQRES 6 B 230 GLN LYS GLN ALA GLY VAL VAL GLU TYR ALA ARG MET LEU SEQRES 7 B 230 GLU VAL LYS GLU GLN ILE GLY HIS VAL ILE ILE PRO ARG SEQRES 8 B 230 ILE ASN GLN ASP ILE PRO ILE TYR ALA GLY SER ALA GLU SEQRES 9 B 230 GLU ASN LEU GLN ARG GLY VAL GLY HIS LEU GLU GLY THR SEQRES 10 B 230 SER LEU PRO VAL GLY GLY GLU SER THR HIS ALA VAL LEU SEQRES 11 B 230 THR ALA HIS ARG GLY LEU PRO THR ALA LYS LEU PHE THR SEQRES 12 B 230 ASN LEU ASP LYS VAL THR VAL GLY ASP ARG PHE TYR ILE SEQRES 13 B 230 GLU HIS ILE GLY GLY LYS ILE ALA TYR GLN VAL ASP GLN SEQRES 14 B 230 ILE LYS VAL ILE ALA PRO ASP GLN LEU GLU ASP LEU TYR SEQRES 15 B 230 VAL ILE GLN GLY GLU ASP HIS VAL THR LEU LEU THR ALA SEQRES 16 B 230 THR PRO TYR MET ILE ASN SER HIS ARG LEU LEU VAL ARG SEQRES 17 B 230 GLY LYS ARG ILE PRO TYR VAL GLU LYS THR VAL GLN LYS SEQRES 18 B 230 ASP SER LYS THR PHE ARG GLN GLN GLN FORMUL 3 HOH *34(H2 O) HELIX 1 1 ASN A 5 THR A 14 1 10 HELIX 2 2 ASP A 17 ASN A 41 1 25 HELIX 3 3 ALA A 64 GLU A 68 5 5 HELIX 4 4 PRO A 79 ASN A 82 5 4 HELIX 5 5 ALA A 92 GLN A 97 1 6 HELIX 6 6 LYS A 129 VAL A 137 5 9 HELIX 7 7 LEU A 167 TYR A 171 5 5 HELIX 8 8 ASN B 5 LYS B 15 1 11 HELIX 9 9 ASP B 17 GLY B 37 1 21 HELIX 10 10 ALA B 64 GLU B 68 5 5 HELIX 11 11 ALA B 92 LEU B 96 5 5 HELIX 12 12 ASN B 133 VAL B 137 5 5 HELIX 13 13 LEU B 167 TYR B 171 5 5 SHEET 1 A18 GLY A 150 ILE A 162 0 SHEET 2 A18 ARG A 142 HIS A 147 -1 N HIS A 147 O GLY A 150 SHEET 3 A18 GLY A 74 ILE A 78 -1 N HIS A 75 O GLU A 146 SHEET 4 A18 GLN A 83 ALA A 89 -1 O ILE A 87 N GLY A 74 SHEET 5 A18 VAL A 100 HIS A 102 1 O VAL A 100 N TYR A 88 SHEET 6 A18 THR A 115 THR A 120 -1 O THR A 120 N GLY A 101 SHEET 7 A18 ASP A 177 THR A 185 1 O LEU A 182 N LEU A 119 SHEET 8 A18 HIS A 192 ILE A 201 -1 O LEU A 194 N THR A 183 SHEET 9 A18 GLY A 150 ILE A 162 -1 N GLN A 158 O ARG A 197 SHEET 10 A18 GLY B 150 ILE B 162 -1 O ILE B 159 N ILE A 159 SHEET 11 A18 HIS B 192 ILE B 201 -1 O ARG B 197 N GLN B 158 SHEET 12 A18 ASP B 177 THR B 185 -1 N VAL B 179 O GLY B 198 SHEET 13 A18 THR B 115 THR B 120 1 N LEU B 119 O THR B 180 SHEET 14 A18 VAL B 100 HIS B 102 -1 N GLY B 101 O THR B 120 SHEET 15 A18 GLN B 83 TYR B 88 1 N TYR B 88 O VAL B 100 SHEET 16 A18 GLY B 74 ILE B 78 -1 N GLY B 74 O ILE B 87 SHEET 17 A18 ARG B 142 HIS B 147 -1 O GLU B 146 N HIS B 75 SHEET 18 A18 GLY B 150 ILE B 162 -1 O TYR B 154 N PHE B 143 CISPEP 1 THR A 185 PRO A 186 0 -6.05 CISPEP 2 THR B 185 PRO B 186 0 3.07 CRYST1 43.477 49.418 52.708 87.86 70.47 89.40 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023001 -0.000241 -0.008155 0.00000 SCALE2 0.000000 0.020237 -0.000727 0.00000 SCALE3 0.000000 0.000000 0.020144 0.00000