HEADER OXIDOREDUCTASE 31-MAR-11 3RD5 TITLE CRYSTAL STRUCTURE OF A PUTATIVE UNCHARACTERIZED PROTEIN FROM TITLE 2 MYCOBACTERIUM PARATUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYPAA.01249.C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM PARATUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1770; SOURCE 4 STRAIN: K-10; SOURCE 5 ATCC: BAA-968; SOURCE 6 GENE: MAP_0980C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 03-APR-24 3RD5 1 REMARK REVDAT 4 21-FEB-24 3RD5 1 REMARK SEQADV REVDAT 3 22-APR-15 3RD5 1 JRNL VERSN REVDAT 2 08-JUN-11 3RD5 1 SEQADV SEQRES REVDAT 1 20-APR-11 3RD5 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 69906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.1880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2187 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1522 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2985 ; 1.539 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3665 ; 1.019 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;29.377 ;21.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;11.658 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.028 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2496 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1369 ; 0.924 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 561 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2189 ; 1.562 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 818 ; 2.491 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 784 ; 4.028 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0060 71.9810 19.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0592 REMARK 3 T33: 0.0142 T12: 0.0236 REMARK 3 T13: 0.0025 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.2268 L22: 0.6356 REMARK 3 L33: 1.3342 L12: 0.2009 REMARK 3 L13: -0.1926 L23: 0.5361 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: -0.1012 S13: 0.0802 REMARK 3 S21: 0.0850 S22: 0.0087 S23: 0.0391 REMARK 3 S31: -0.0309 S32: -0.1486 S33: 0.0308 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3550 83.2310 13.4090 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0302 REMARK 3 T33: 0.0676 T12: 0.0138 REMARK 3 T13: -0.0042 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.3666 L22: 0.0419 REMARK 3 L33: 3.7469 L12: -0.1892 REMARK 3 L13: -1.6758 L23: 0.1809 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.0222 S13: 0.1521 REMARK 3 S21: 0.0114 S22: 0.0217 S23: -0.0632 REMARK 3 S31: -0.3027 S32: -0.1916 S33: -0.0464 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4750 68.7390 2.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.0102 T22: 0.0239 REMARK 3 T33: 0.0262 T12: 0.0047 REMARK 3 T13: -0.0055 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.5287 L22: 0.4197 REMARK 3 L33: 1.0498 L12: -0.1533 REMARK 3 L13: 0.0155 L23: -0.0273 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.0110 S13: 0.0341 REMARK 3 S21: -0.0172 S22: 0.0086 S23: -0.0395 REMARK 3 S31: 0.0247 S32: 0.0634 S33: -0.0153 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8000 61.6700 6.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.0215 T22: 0.0071 REMARK 3 T33: 0.0203 T12: 0.0012 REMARK 3 T13: -0.0059 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9252 L22: 0.5563 REMARK 3 L33: 0.8634 L12: -0.0913 REMARK 3 L13: -0.1151 L23: 0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: -0.0467 S13: -0.0670 REMARK 3 S21: 0.0123 S22: -0.0014 S23: 0.0003 REMARK 3 S31: 0.1149 S32: -0.0104 S33: 0.0187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3RD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-11; 04-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5; 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 21-ID-G; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978560; 1.5418 REMARK 200 MONOCHROMATOR : C(111); RIGAKU VARIMAX REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; RIGAKU REMARK 200 SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 22.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: STRUCTURE SOLVED VIA IODIDE PHASING AT CUKALPHA, REMARK 200 DATA SET 2 WAS USED FOR THIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALDBIOSYSTEMS JCSG+ SCREEN B4: REMARK 280 100MM HEPES PH 7.5, 10% PEG 8000, 8% ETHYLENE GLYCOL, REMARK 280 MYPAA.01249.CA1 PW29465 AT 29 MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K. EMERALDBIOSYSTEMS JCSG+ SCREEN B4: 100MM REMARK 280 HEPES PH 7.5, 10% PEG 8000, 8% ETHYLENE GLYCOL, MYPAA.01249.CA1 REMARK 280 PW29465 AT 29 MG/ML, FOR PHASING THIS CRYSTAL WAS TRANFERRED IN REMARK 280 100MM HEPES PH 7.5, 15% PEG 6000, 10% ETHYLENE GLYCOL, 400MM REMARK 280 SODIUM IODIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 203 REMARK 465 GLY A 204 REMARK 465 ALA A 205 REMARK 465 SER A 206 REMARK 465 GLY A 207 REMARK 465 ARG A 208 REMARK 465 LYS A 209 REMARK 465 LEU A 210 REMARK 465 GLY A 211 REMARK 465 ASP A 212 REMARK 465 ALA A 213 REMARK 465 LEU A 214 REMARK 465 MET A 215 REMARK 465 SER A 216 REMARK 465 ALA A 217 REMARK 465 ALA A 218 REMARK 465 THR A 219 REMARK 465 ARG A 220 REMARK 465 VAL A 221 REMARK 465 VAL A 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 THR A 224 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 180 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 114 -61.56 -108.13 REMARK 500 ASP A 130 -68.59 -124.46 REMARK 500 SER A 136 -150.80 -114.33 REMARK 500 ASP A 149 58.66 -150.25 REMARK 500 HIS A 199 56.67 -113.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYPAA.01249.C RELATED DB: TARGETDB DBREF 3RD5 A 1 289 UNP Q741V7 Q741V7_MYCPA 1 289 SEQADV 3RD5 GLY A -1 UNP Q741V7 EXPRESSION TAG SEQADV 3RD5 SER A 0 UNP Q741V7 EXPRESSION TAG SEQRES 1 A 291 GLY SER MET THR GLY TRP THR ALA ALA ASP LEU PRO SER SEQRES 2 A 291 PHE ALA GLN ARG THR VAL VAL ILE THR GLY ALA ASN SER SEQRES 3 A 291 GLY LEU GLY ALA VAL THR ALA ARG GLU LEU ALA ARG ARG SEQRES 4 A 291 GLY ALA THR VAL ILE MET ALA VAL ARG ASP THR ARG LYS SEQRES 5 A 291 GLY GLU ALA ALA ALA ARG THR MET ALA GLY GLN VAL GLU SEQRES 6 A 291 VAL ARG GLU LEU ASP LEU GLN ASP LEU SER SER VAL ARG SEQRES 7 A 291 ARG PHE ALA ASP GLY VAL SER GLY ALA ASP VAL LEU ILE SEQRES 8 A 291 ASN ASN ALA GLY ILE MET ALA VAL PRO TYR ALA LEU THR SEQRES 9 A 291 VAL ASP GLY PHE GLU SER GLN ILE GLY THR ASN HIS LEU SEQRES 10 A 291 GLY HIS PHE ALA LEU THR ASN LEU LEU LEU PRO ARG LEU SEQRES 11 A 291 THR ASP ARG VAL VAL THR VAL SER SER MET ALA HIS TRP SEQRES 12 A 291 PRO GLY ARG ILE ASN LEU GLU ASP LEU ASN TRP ARG SER SEQRES 13 A 291 ARG ARG TYR SER PRO TRP LEU ALA TYR SER GLN SER LYS SEQRES 14 A 291 LEU ALA ASN LEU LEU PHE THR SER GLU LEU GLN ARG ARG SEQRES 15 A 291 LEU THR ALA ALA GLY SER PRO LEU ARG ALA LEU ALA ALA SEQRES 16 A 291 HIS PRO GLY TYR SER HIS THR ASN LEU GLN GLY ALA SER SEQRES 17 A 291 GLY ARG LYS LEU GLY ASP ALA LEU MET SER ALA ALA THR SEQRES 18 A 291 ARG VAL VAL ALA THR ASP ALA ASP PHE GLY ALA ARG GLN SEQRES 19 A 291 THR LEU TYR ALA ALA SER GLN ASP LEU PRO GLY ASP SER SEQRES 20 A 291 PHE VAL GLY PRO ARG PHE GLY TYR LEU GLY ARG THR GLN SEQRES 21 A 291 PRO VAL GLY ARG SER ARG ARG ALA LYS ASP ALA GLY MET SEQRES 22 A 291 ALA ALA ALA LEU TRP ALA LEU SER GLU GLN LEU THR LYS SEQRES 23 A 291 THR GLU PHE PRO LEU HET EPE A 300 15 HET EDO A 301 4 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EPE HEPES HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *413(H2 O) HELIX 1 1 THR A 5 LEU A 9 5 5 HELIX 2 2 SER A 24 ARG A 37 1 14 HELIX 3 3 ASP A 47 ARG A 56 1 10 HELIX 4 4 ASP A 71 GLY A 81 1 11 HELIX 5 5 GLU A 107 HIS A 114 1 8 HELIX 6 6 HIS A 114 LEU A 125 1 12 HELIX 7 7 SER A 137 TRP A 141 5 5 HELIX 8 8 SER A 158 ALA A 184 1 27 HELIX 9 9 GLY A 196 THR A 200 5 5 HELIX 10 10 ALA A 223 GLN A 239 1 17 HELIX 11 11 ARG A 264 LYS A 267 5 4 HELIX 12 12 ASP A 268 LYS A 284 1 17 SHEET 1 A 8 GLN A 61 GLU A 66 0 SHEET 2 A 8 THR A 40 VAL A 45 1 N MET A 43 O GLU A 63 SHEET 3 A 8 THR A 16 THR A 20 1 N ILE A 19 O ILE A 42 SHEET 4 A 8 ALA A 85 ASN A 90 1 O ILE A 89 N VAL A 18 SHEET 5 A 8 LEU A 128 VAL A 135 1 O VAL A 133 N LEU A 88 SHEET 6 A 8 ARG A 189 ALA A 193 1 O LEU A 191 N VAL A 132 SHEET 7 A 8 PHE A 246 PRO A 249 1 O VAL A 247 N ALA A 192 SHEET 8 A 8 THR A 257 PRO A 259 -1 O GLN A 258 N GLY A 248 SITE 1 AC1 7 TRP A 141 SER A 263 ARG A 264 ARG A 265 SITE 2 AC1 7 HOH A 348 HOH A 394 HOH A 544 SITE 1 AC2 4 TYR A 197 ASP A 268 GLY A 270 HOH A 479 CRYST1 64.920 78.100 86.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011598 0.00000