HEADER PROTEIN BINDING/TOXIN 05-APR-11 3RF3 TITLE SHIGELLA IPAA-VBS3 IN COMPLEX WITH HUMAN VINCULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINCULIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-258; COMPND 5 SYNONYM: METAVINCULIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INVASIN IPAA; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 488-512; COMPND 11 SYNONYM: 70 KDA ANTIGEN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCL, VINCULIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 13 ORGANISM_TAXID: 623; SOURCE 14 GENE: CP0125, IPAA; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA-HELIX BUNDLE DOMAIN, CYTOSKELETAL PROTEIN, PROTEIN-PROTEIN KEYWDS 2 INTERACTIONS, CELL ADHESION, CYTOSKELETON, BACTERIAL TOXINS, KEYWDS 3 PATHOGEN-HOST INTERACTIONS, IPAA, TALIN, F-ACTIN, KEYWDS 4 PHOSPHATIDYLINOSITOL 4 5-BISPHOSPHATE, CYTOSOL, FOCAL ADHESION, KEYWDS 5 PROTEIN BINDING-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PARK,A.SHARFF,T.IZARD REVDAT 3 13-SEP-23 3RF3 1 REMARK SEQADV REVDAT 2 23-MAY-12 3RF3 1 JRNL VERSN REVDAT 1 27-APR-11 3RF3 0 JRNL AUTH H.PARK,C.VALENCIA-GALLARDO,A.SHARFF,G.TRAN VAN NHIEU,T.IZARD JRNL TITL NOVEL VINCULIN BINDING SITE OF THE IPAA INVASIN OF SHIGELLA. JRNL REF J.BIOL.CHEM. V. 286 23214 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21525010 JRNL DOI 10.1074/JBC.M110.184283 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.13.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 82388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4129 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5873 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1956 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5549 REMARK 3 BIN R VALUE (WORKING SET) : 0.1924 REMARK 3 BIN FREE R VALUE : 0.2496 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.52 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 324 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 804 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.72340 REMARK 3 B22 (A**2) : 1.64710 REMARK 3 B33 (A**2) : 4.07630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.188 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.102 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8930 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 16258 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.97 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.2227 4.0338 93.9219 REMARK 3 T TENSOR REMARK 3 T11: -0.0147 T22: -0.0481 REMARK 3 T33: -0.0777 T12: -0.0079 REMARK 3 T13: -0.0178 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.1298 L22: 0.3774 REMARK 3 L33: 1.5292 L12: -0.0862 REMARK 3 L13: 0.3162 L23: -0.0551 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: -0.0160 S13: -0.0310 REMARK 3 S21: -0.0627 S22: -0.0016 S23: 0.0641 REMARK 3 S31: 0.0756 S32: -0.2039 S33: -0.0614 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.3841 5.1245 112.4560 REMARK 3 T TENSOR REMARK 3 T11: -0.0177 T22: -0.0569 REMARK 3 T33: -0.0746 T12: -0.0010 REMARK 3 T13: -0.0149 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1712 L22: 0.3923 REMARK 3 L33: 1.5503 L12: 0.1061 REMARK 3 L13: 0.3037 L23: 0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.0043 S13: -0.0246 REMARK 3 S21: 0.0398 S22: -0.0075 S23: -0.0456 REMARK 3 S31: 0.0632 S32: 0.1656 S33: -0.0457 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.9245 2.6817 113.2560 REMARK 3 T TENSOR REMARK 3 T11: -0.0052 T22: -0.0376 REMARK 3 T33: -0.0734 T12: -0.0413 REMARK 3 T13: -0.0123 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.6270 L22: 0.9429 REMARK 3 L33: 3.5981 L12: 0.1677 REMARK 3 L13: -0.6432 L23: 1.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 0.0554 S13: 0.0305 REMARK 3 S21: 0.1686 S22: -0.0762 S23: 0.1305 REMARK 3 S31: 0.0912 S32: -0.1034 S33: 0.0337 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 17.9173 3.0151 93.4865 REMARK 3 T TENSOR REMARK 3 T11: -0.0154 T22: -0.0463 REMARK 3 T33: -0.0825 T12: 0.0328 REMARK 3 T13: -0.0185 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.3888 L22: 1.5116 REMARK 3 L33: 4.4431 L12: 0.3776 REMARK 3 L13: 0.0875 L23: -0.9688 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.0019 S13: -0.0027 REMARK 3 S21: -0.0931 S22: -0.1087 S23: -0.1091 REMARK 3 S31: 0.0543 S32: 0.0660 S33: 0.0781 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82474 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 137.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2GWW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 20% PEG 3350, REMARK 280 0.1 M CACODYLATE, PH 7.2, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.79150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.95200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.65950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.95200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.79150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.65950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY C 484 REMARK 465 SER C 485 REMARK 465 HIS C 486 REMARK 465 MET C 487 REMARK 465 GLY C 511 REMARK 465 THR C 512 REMARK 465 GLY D 484 REMARK 465 SER D 485 REMARK 465 HIS D 486 REMARK 465 MET D 487 REMARK 465 THR D 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 26 CG SD CE REMARK 470 HIS A 27 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 130.99 157.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GWW RELATED DB: PDB REMARK 900 RELATED ID: 2HSQ RELATED DB: PDB REMARK 900 RELATED ID: 2IBF RELATED DB: PDB DBREF 3RF3 A 1 258 UNP P18206 VINC_HUMAN 1 258 DBREF 3RF3 B 1 258 UNP P18206 VINC_HUMAN 1 258 DBREF 3RF3 C 488 512 UNP P18010 IPAA_SHIFL 488 512 DBREF 3RF3 D 488 512 UNP P18010 IPAA_SHIFL 488 512 SEQADV 3RF3 GLY C 484 UNP P18010 EXPRESSION TAG SEQADV 3RF3 SER C 485 UNP P18010 EXPRESSION TAG SEQADV 3RF3 HIS C 486 UNP P18010 EXPRESSION TAG SEQADV 3RF3 MET C 487 UNP P18010 EXPRESSION TAG SEQADV 3RF3 GLY D 484 UNP P18010 EXPRESSION TAG SEQADV 3RF3 SER D 485 UNP P18010 EXPRESSION TAG SEQADV 3RF3 HIS D 486 UNP P18010 EXPRESSION TAG SEQADV 3RF3 MET D 487 UNP P18010 EXPRESSION TAG SEQRES 1 A 258 MET PRO VAL PHE HIS THR ARG THR ILE GLU SER ILE LEU SEQRES 2 A 258 GLU PRO VAL ALA GLN GLN ILE SER HIS LEU VAL ILE MET SEQRES 3 A 258 HIS GLU GLU GLY GLU VAL ASP GLY LYS ALA ILE PRO ASP SEQRES 4 A 258 LEU THR ALA PRO VAL ALA ALA VAL GLN ALA ALA VAL SER SEQRES 5 A 258 ASN LEU VAL ARG VAL GLY LYS GLU THR VAL GLN THR THR SEQRES 6 A 258 GLU ASP GLN ILE LEU LYS ARG ASP MET PRO PRO ALA PHE SEQRES 7 A 258 ILE LYS VAL GLU ASN ALA CYS THR LYS LEU VAL GLN ALA SEQRES 8 A 258 ALA GLN MET LEU GLN SER ASP PRO TYR SER VAL PRO ALA SEQRES 9 A 258 ARG ASP TYR LEU ILE ASP GLY SER ARG GLY ILE LEU SER SEQRES 10 A 258 GLY THR SER ASP LEU LEU LEU THR PHE ASP GLU ALA GLU SEQRES 11 A 258 VAL ARG LYS ILE ILE ARG VAL CYS LYS GLY ILE LEU GLU SEQRES 12 A 258 TYR LEU THR VAL ALA GLU VAL VAL GLU THR MET GLU ASP SEQRES 13 A 258 LEU VAL THR TYR THR LYS ASN LEU GLY PRO GLY MET THR SEQRES 14 A 258 LYS MET ALA LYS MET ILE ASP GLU ARG GLN GLN GLU LEU SEQRES 15 A 258 THR HIS GLN GLU HIS ARG VAL MET LEU VAL ASN SER MET SEQRES 16 A 258 ASN THR VAL LYS GLU LEU LEU PRO VAL LEU ILE SER ALA SEQRES 17 A 258 MET LYS ILE PHE VAL THR THR LYS ASN SER LYS ASN GLN SEQRES 18 A 258 GLY ILE GLU GLU ALA LEU LYS ASN ARG ASN PHE THR VAL SEQRES 19 A 258 GLU LYS MET SER ALA GLU ILE ASN GLU ILE ILE ARG VAL SEQRES 20 A 258 LEU GLN LEU THR SER TRP ASP GLU ASP ALA TRP SEQRES 1 B 258 MET PRO VAL PHE HIS THR ARG THR ILE GLU SER ILE LEU SEQRES 2 B 258 GLU PRO VAL ALA GLN GLN ILE SER HIS LEU VAL ILE MET SEQRES 3 B 258 HIS GLU GLU GLY GLU VAL ASP GLY LYS ALA ILE PRO ASP SEQRES 4 B 258 LEU THR ALA PRO VAL ALA ALA VAL GLN ALA ALA VAL SER SEQRES 5 B 258 ASN LEU VAL ARG VAL GLY LYS GLU THR VAL GLN THR THR SEQRES 6 B 258 GLU ASP GLN ILE LEU LYS ARG ASP MET PRO PRO ALA PHE SEQRES 7 B 258 ILE LYS VAL GLU ASN ALA CYS THR LYS LEU VAL GLN ALA SEQRES 8 B 258 ALA GLN MET LEU GLN SER ASP PRO TYR SER VAL PRO ALA SEQRES 9 B 258 ARG ASP TYR LEU ILE ASP GLY SER ARG GLY ILE LEU SER SEQRES 10 B 258 GLY THR SER ASP LEU LEU LEU THR PHE ASP GLU ALA GLU SEQRES 11 B 258 VAL ARG LYS ILE ILE ARG VAL CYS LYS GLY ILE LEU GLU SEQRES 12 B 258 TYR LEU THR VAL ALA GLU VAL VAL GLU THR MET GLU ASP SEQRES 13 B 258 LEU VAL THR TYR THR LYS ASN LEU GLY PRO GLY MET THR SEQRES 14 B 258 LYS MET ALA LYS MET ILE ASP GLU ARG GLN GLN GLU LEU SEQRES 15 B 258 THR HIS GLN GLU HIS ARG VAL MET LEU VAL ASN SER MET SEQRES 16 B 258 ASN THR VAL LYS GLU LEU LEU PRO VAL LEU ILE SER ALA SEQRES 17 B 258 MET LYS ILE PHE VAL THR THR LYS ASN SER LYS ASN GLN SEQRES 18 B 258 GLY ILE GLU GLU ALA LEU LYS ASN ARG ASN PHE THR VAL SEQRES 19 B 258 GLU LYS MET SER ALA GLU ILE ASN GLU ILE ILE ARG VAL SEQRES 20 B 258 LEU GLN LEU THR SER TRP ASP GLU ASP ALA TRP SEQRES 1 C 29 GLY SER HIS MET THR ARG GLU THR ILE PHE GLU ALA SER SEQRES 2 C 29 LYS LYS VAL THR ASN SER LEU SER ASN LEU ILE SER LEU SEQRES 3 C 29 ILE GLY THR SEQRES 1 D 29 GLY SER HIS MET THR ARG GLU THR ILE PHE GLU ALA SER SEQRES 2 D 29 LYS LYS VAL THR ASN SER LEU SER ASN LEU ILE SER LEU SEQRES 3 D 29 ILE GLY THR HET CAC A 300 5 HET CAC B 300 5 HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 5 CAC 2(C2 H6 AS O2 1-) FORMUL 7 HOH *804(H2 O) HELIX 1 1 THR A 6 GLU A 14 1 9 HELIX 2 2 PRO A 15 HIS A 27 1 13 HELIX 3 3 LEU A 40 THR A 65 1 26 HELIX 4 4 ASP A 67 ASP A 98 1 32 HELIX 5 5 SER A 101 THR A 146 1 46 HELIX 6 6 VAL A 147 VAL A 151 5 5 HELIX 7 7 THR A 153 GLN A 180 1 28 HELIX 8 8 HIS A 184 LYS A 219 1 36 HELIX 9 9 GLY A 222 GLN A 249 1 28 HELIX 10 10 THR B 6 GLU B 14 1 9 HELIX 11 11 PRO B 15 GLU B 29 1 15 HELIX 12 12 LEU B 40 THR B 65 1 26 HELIX 13 13 ASP B 67 MET B 74 1 8 HELIX 14 14 MET B 74 ASP B 98 1 25 HELIX 15 15 VAL B 102 THR B 146 1 45 HELIX 16 16 VAL B 147 VAL B 151 5 5 HELIX 17 17 THR B 153 GLN B 180 1 28 HELIX 18 18 HIS B 184 LYS B 219 1 36 HELIX 19 19 GLY B 222 GLN B 249 1 28 HELIX 20 20 THR C 491 SER C 508 1 18 HELIX 21 21 THR D 491 SER D 508 1 18 CISPEP 1 GLU A 14 PRO A 15 0 8.55 CISPEP 2 MET B 1 PRO B 2 0 1.46 CISPEP 3 GLU B 14 PRO B 15 0 6.88 SITE 1 AC1 4 ASP A 176 LYS A 199 HOH A 582 HOH A 618 SITE 1 AC2 4 ASP B 176 LYS B 199 HOH B 582 HOH B 618 CRYST1 53.583 85.319 137.904 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018663 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007251 0.00000